BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28250.1
Length=1327
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491950 jgi|Araly1|491950|fgenesh2_kg.7__1383__AT4G28250.1 1965 0.0
> Ahg491950 jgi|Araly1|491950|fgenesh2_kg.7__1383__AT4G28250.1
Length=1284
Score = 1965 bits (1064), Expect = 0.0
Identities = 1216/1289 (94%), Gaps = 12/1289 (1%)
Strand=Plus/Plus
Query 42 CTCTCACTCTCTCACTGTCGGCAAACTAAC-TTATTCACTTTTCCGGCACTGATTCTGCT 100
|||||||||||||||||||||| || |||| || |||||||||||||| | |||||||||
Sbjct 1 CTCTCACTCTCTCACTGTCGGCGAAGTAACATT-TTCACTTTTCCGGCTCCGATTCTGCT 59
Query 101 CGGGAAAAACAACTCCGGCACAAAATGCAGCTTTTTCCAGTCATGTTAGCCACACTCTGC 160
||| |||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||
Sbjct 60 CGGAAAAAACAACTCCGGCAGAAAATGCAGCTCTCTCCGGTCATGTTAGCCACACTCTGC 119
Query 161 ATTGTCCTGCAGCTTCTCATTGGCTCGTCAGCTTTGGCTACGACAAATCGCCACGTGTCA 220
||||||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||
Sbjct 120 ATTGTCCTGCAGCTTCTAATTGGCTCGTCTGCTTTGTCTACGACTAATCGCCACGTGTCA 179
Query 221 AACTCTCATTGGCTTCCCGCAGTAGCTACATGGTACGGAAGCCCCAACGGTGACGGCAGC 280
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 180 AACTCTCATTGGCTTCCCGCAGTCGCTACATGGTACGGAAGCCCCAACGGCGACGGCAGC 239
Query 281 GACGGAGGAGCGTGTGGTTACGGTACGTTGGTGGATGTGAAGCCGTTACATGCGAGGGTT 340
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GACGGAGGAGCGTGTGGGTACGGTACGTTGGTGGATGTGAAGCCGTTACATGCGAGGGTT 299
Query 341 GGAGCGGTGAATCCAATTCTCTTCAAAAATGGTGAAGGTTGCGGAGCTTGTTACAAGGTT 400
||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 300 GGAGCCGTGAATCCTATTCTCTTCAAAAACGGTGAAGGTTGTGGAGCTTGTTACAAGGTT 359
Query 401 CGATGCTTGGACAAGAGCATTTGTTCCCGGAGAGCCGTTACCGTCATAATTACCGATGAG 460
|| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||
Sbjct 360 CGGTGCTTGGACAAGAGCATTTGTTCCCGGAGAGCCGTCACCGTTATAATCACCGATGAG 419
Query 461 TGTCCCGGCTGCTCTAAAACCAGCACTCACTTTGACCTCAGTGGTGCCGTCTTTGGCCGG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGTCCCGGCTGCTCTAAAACCAGCACTCACTTTGACCTCAGTGGTGCCGTCTTTGGCCGG 479
Query 521 TTAGCTATTGCCGGAGAGTCAGGGCCTCTCCGTAACCGTGGACTAATCCCAGTCATTTAT 580
|| ||||||||||||||||| || ||||||||||||||||| |||||||| ||||| |||
Sbjct 480 TTGGCTATTGCCGGAGAGTCTGGCCCTCTCCGTAACCGTGGGCTAATCCCCGTCATATAT 539
Query 581 CGCCGGACTGCATGCAAATATAGAGGGAAGAACATAGCATTCCATGTGAACGAAGGATCA 640
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 540 CGCCGGACTGCATGCAAATATAGAGGGAAGAACATAGCGTTCCATGTGAACGAAGGATCA 599
Query 641 ACTGATTTTTGGCTATCTCTGCTGGTCGAGTTTGAAGATGGAGAAGGAGACATTGGCTCC 700
|||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||
Sbjct 600 ACTGATTTTTGGCTATCTTTGCTGGTCGAGTTTGAAGACGGAGAAGGAGACATTGGCTCC 659
Query 701 ATGCACATTCGCCAAGCAGGAGCCAGGGAATGGTTAGAGATGAAGCATGTATGGGGAGCC 760
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 660 ATGTACATTCGCCAAGCAGGAGCGAGGGAATGGTTAGAGATGAAGCATGTATGGGGAGCC 719
Query 761 AACTGGTGCATCATTGGAGGGCCACTCAAGGGACCATTCTCCATCAAGCTCACCACTTTG 820
|||||||||||| ||||||| ||||||||||||||||||||| | |||||||||||||||
Sbjct 720 AACTGGTGCATCGTTGGAGGACCACTCAAGGGACCATTCTCCGTAAAGCTCACCACTTTG 779
Query 821 TCTGCCGGTAAAACACTCTCTGCCACCGACGTTGTCCCTAGAAACTGGGCTCCCAAAGCA 880
|||||||||| ||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 780 TCTGCCGGTAGAACACTCTCCGCCACCGACGTTGTCCCTAGAAACTGGACTCCCAAAGCC 839
Query 881 ACTTACAGTTCCCGCCTCAACTTCTCCCCTGTCCTTTGAACCATCTCTTCTACATAGTCA 940
||||||||||||||||||||||||||||| || || ||||||| ||||||||||||||||
Sbjct 840 ACTTACAGTTCCCGCCTCAACTTCTCCCCCGTTCTCTGAACCAACTCTTCTACATAGTCA 899
Query 941 AAGACTATTATAGTTC-TATTACTACTACTACTCGTGTGATCGtttttttttAGAGAGAA 999
||||||||||| |||| ||||| ||||||||||||||||||||||||||| ||||||||
Sbjct 900 AAGACTATTATTGTTCCTATTA-TACTACTACTCGTGTGATCGTTTTTTTA-AGAGAGAA 957
Query 1000 ACAGAGTGACTGCTGGCCGTAGGATGGAAACAGTAAGAAAAGTACATCCGAATCAACGGC 1059
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 958 ACAGAGTGACTGCTGGCCGTAGGATGGAAACAATAAGAAAAGTACATCCGAATCAACGGC 1017
Query 1060 TATTGCGTTCTCTCCTCTTCCTTCTtgtga--tgtggatttgtgtgtgtgt-g--atgtg 1114
| ||||||||||||||||||||||||||| ||||||||||||||||||| | |||||
Sbjct 1018 TCTTGCGTTCTCTCCTCTTCCTTCTTGTGTGCTGTGGATTTGTGTGTGTGTTGTGATGTG 1077
Query 1115 tcggtgagtgtgtTATAGAAGTCACTATAGCCATCTTCAAAGGGGAGATAGAGCTAGGAG 1174
||||||||||||||| || |||||| |||||||||||||||||||||||||||||||||
Sbjct 1078 TCGGTGAGTGTGTTAG-GA-GTCACTGTAGCCATCTTCAAAGGGGAGATAGAGCTAGGAG 1135
Query 1175 TAGTATTTGGTGGTGTCACGTCGTTTGTTTTTTCTATATAATTTTTGTCACTATGTCTTT 1234
|||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |||||
Sbjct 1136 TAGTATTTGGTGGTGTCATGTCTTTTGTTTTTTCTATATAATTCTTGTCACTATCTCTTT 1195
Query 1235 CTATTATGGGACATGGCATAATATATCATATGAATAATTTATCACTATGTCTTTCTATTG 1294
||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1196 CTATTATGGGACATGACATTATATATCATATGAATAATTTATCACTATGTCTTTCTATTG 1255
Query 1295 TGGGACATTACATAATAATGTATGATATG 1323
||||||||||||||||||||||| |||||
Sbjct 1256 TGGGACATTACATAATAATGTATCATATG 1284
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49636037934
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5