BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28260.1
Length=2322
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491947 jgi|Araly1|491947|fgenesh2_kg.7__1380__AT4G28260.2 2726 0.0
> Ahg491947 jgi|Araly1|491947|fgenesh2_kg.7__1380__AT4G28260.2
Length=2111
Score = 2726 bits (1476), Expect = 0.0
Identities = 1598/1657 (96%), Gaps = 7/1657 (0%)
Strand=Plus/Plus
Query 561 TGAATGGCTGAGAAGAAAGAATTAGGGTTACCAAAGCCTAGTATTAATTTGAAAGAGCAA 620
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 456 TGAATGGCTGAGAAGAAAGAATTAGGGTTACCAAAGCCTAGTATTAATTTGAAAGAGCAG 515
Query 621 TTAGCAAGAACTACTCTGAAGAATCTGAGGTTACAAGGGCATACTTACATTGAGCTACGT 680
||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 516 TTAGCTAGAACTACTCTGAAGAATTTGAGGTTACAAGGGCATACTTACATTGAGCTACGT 575
Query 681 GAGGATGGGAAACGTTTTGTATTCTTCTGCACTTTGTGTCTTGCTCCTTGCTACAGCGAC 740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 GAGGATGGGAAACGTTTTGTATTCTTCTGCACTTTGTGTCTTGCTCCTTGCTACAGCGAC 635
Query 741 ACAATCTTGCTTGGGCACTTGAATGGAAACCTTCACAAGGAGAGATTGGCATGTGCTAGG 800
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 636 ACAATCTTGCTTGGACACTTGAATGGAAACCTTCACAAGGAGAGATTGGCATGTGCTAGG 695
Query 801 ATCACACTTCTTGGAACGAATCCTTGGCCTTTCAGTGATGGTGTACTTTTCTTTGATAGT 860
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 696 ATTACACTTCTTGGAACGAATCCTTGGCCTTTCAGTGATGGTGTCCTTTTCTTTGATAGT 755
Query 861 TCAACTGGAGAAGAAGAAGAGAAATCTCCAGTTTCTGGTGGTG-AAGGGGTTCCTGATAC 919
|||||||||||||||||||||||| |||||||||||||||||| || | ||||| | |||
Sbjct 756 TCAACTGGAGAAGAAGAAGAGAAAACTCCAGTTTCTGGTGGTGCAA-GTGTTCCCGGTAC 814
Query 920 GTTGGAGCATTGTAGTGATGATGAAAGATTTGCTATTGTCAAGTATGATAACAACAAAAC 979
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 815 GTTGGAGCATTGTAGTGATGATGAAAGATTTGCTATTGTCAAGTATGATAACAACAAAGC 874
Query 980 AAATGGAGATAATGTGCCTGCTGCAGTTACTGATGATGAACCTAGTCACGCTGCAGATGA 1039
|||||||||||| |||||||||||||||||||||||||||||||||| || |||||||
Sbjct 875 AAATGGAGATAACCAGCCTGCTGCAGTTACTGATGATGAACCTAGTCACTCTACAGATGA 934
Query 1040 TCTGCTAATTTCTGGTGTGCTGATCAAGGAGAGAACTCTTGATGTTGAAGCAAAGTTCAT 1099
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 TCTGCTAATTTCTGGTGTGCTGATCAAGGAGAGAACTCTTGATGTTGAAGCAAAGTTCAT 994
Query 1100 TGGTTTTGGCCGAATAGCTGCCAGGTTGTTTGAAACGAAAGGACGCACAACTTGGATTGA 1159
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 995 TGGTTTTGGCCGAATAGCTGCCAGGTTGTTTGAAACGAAAGGACGCACTACTTGGATTGA 1054
Query 1160 TAAACTATGGTGCGAGTGGTTAGGAGACGAGGGTCCTTCAGATGAGGAGAAGGCTACGAT 1219
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1055 TAAACTCTGGTGCGAGTGGTTAGGAGACGAGGGTCCTTCAGATGAGGAGAAGGCTACTAT 1114
Query 1220 CCCGGAGCATGACTTTGCCATTGTCACATTCTCCTACTTCTACAATTTGGGTAGGCTGGG 1279
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1115 CCCAGAGCATGACTTTGCCATTGTCACATTCTCCTACTTCTACAATTTGGGTAGGCTGGG 1174
Query 1280 TTTGCTTGATGATCCGGGCCGTCTTCTCACATCTAGTCAGTCAGAATCAGGGAATGGTGA 1339
|||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1175 TTTGCTCGATGATCCGAGCCGTCTTCTCACATCTAGTCAGTCAGAATCAGGGAACGGTGA 1234
Query 1340 GGACAGTGGCAGGAAGAGAAAGAAGTCTTTCTCGGATCCAGAGGACACCAGTGAATCTCT 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1235 GGACAGTGGCAGGAAGAGAAAGAAGTCTTTCTCGGATCCAGAGGACACCAGTGAATCTCT 1294
Query 1400 GTGTAATCAGTATGACTCTTCTGAGGAGGTTTCTTCAGGTCATAATTCAAACTCGTCAAG 1459
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1295 GTGTAATCAGTATGACTCTTCTGAGGAGGTTTCTTCAGGTCATAATTCAAACTCTTCAAG 1354
Query 1460 AGATCTAATAGCTGATTATGATGATAGTCTCATGAGCAAAAGAGTCGTGAAGAACAGAAC 1519
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1355 AGCTCTAATAGCTGATTATGATGATAGTCTCATGAGCAAAAGAGTCGTGAAGAACAAAAC 1414
Query 1520 GGTAAGACGGGAGCTGAGGAGGCAACAACGAATATTTTCTGAAAGAATATGCGAAGTCTG 1579
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1415 GGTAAGACGGGAGCTGAGGAGGCAACAACGGATATTTTCTGAAAGAATATGCGAAGTCTG 1474
Query 1580 TAAACAAAAGATGCTTCCAGGGAAAGATGCGGCAGCAATACTAAACATGAAGACGGGAAA 1639
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1475 TAAACAAAAGATGCTTCCAGGGAAAGATGCGGCAGCAATACTAAACATGAAGACAGGAAA 1534
Query 1640 TCTTGCTTGTGGCAGCAGAAACCTCCTGGGGGCGTTTCATCTATTTCATGTGTCGTGTGT 1699
|||||| ||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 1535 TCTTGCGTGTGGCAGCAGAAACCTCCTGGGGGCGTTTCATCTTTTTCACGTGTCATGTGT 1594
Query 1700 CGTACACTGGTTTCTCTTCTGTGAGAGTGAAATACTTGGGAACAAGATGGTGAGTGGAAA 1759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1595 CGTACACTGGTTTCTCTTCTGTGAGAGTGAAATACTTGGGAACAAGATGGTGAGTGGAAA 1654
Query 1760 AGGAAAAAAGAGATGCACAAAGCATAGT-G-G-TCAGACTGGTGTAAAGTGGAATGAGTT 1816
|||||||||||||||||||||||||||| | | |||||||||||| ||||||||||||||
Sbjct 1655 AGGAAAAAAGAGATGCACAAAGCATAGTAGTGGTCAGACTGGTGTGAAGTGGAATGAGTT 1714
Query 1817 GGCAAACGATGTGAGCTGGCAAATATTTTCGGTGTTCTGTCCAGAATGCCAAGGCACTGG 1876
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1715 GGCAAACGATGTGAGCTGGCAAATATTTTCAGTGTTCTGTCCAGAATGCCAAGGCACTGG 1774
Query 1877 CATAAATATCGAAGGAGCTGTGATTGAGAGAGACACGTTTCCACTTTCTCAGACATGGAG 1936
||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1775 CATAAATATCGAAGGAGGTGTTATTGAGAGAGACACGTTTCCACTTTCTCAGACATGGAG 1834
Query 1937 GTTCCAGGTGAAAGTGAGTGAAGGTAGAAAAGCATGGGTTAAAAATCCGGAGAGATTGAA 1996
||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 1835 GTTCCAGGTGAAAGTGAGTGAAGGTAGAAAAGCATGGGTGAAAAATCCGGAGAAATTGAA 1894
Query 1997 GAATTGCTCAACCGGATTTCATTTTCCGCAGCAGGCTGAGGAGACGGAACAGATTCCGGT 2056
|||||||||||| || ||||||||||||||||||||||| ||| ||| |||||||||||
Sbjct 1895 GAATTGCTCAACAGGTTTTCATTTTCCGCAGCAGGCTGACGAGTCGGGTCAGATTCCGGT 1954
Query 2057 TCAGGAGGAGAGAGTGCAGATGATGAAACTGGTTCGCTTCTACCGAGTGGAGTTGTAATG 2116
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1955 TCAGGAGGAGAGAGTGCAGATGATGAAACTGGTTCGTTTCTACCGAGTGGAGTTGTAATG 2014
Query 2117 TAGGAAACATACTCATTTCCTC-T-TGTGTAAATAAGGGCTTCGTCTCTCATTTTACAGT 2174
||||||||| |||||||||||| | ||||||||||||||||||||||| |||||||||||
Sbjct 2015 TAGGAAACAAACTCATTTCCTCCTGTGTGTAAATAAGGGCTTCGTCTCGCATTTTACAGT 2074
Query 2175 TCACTGTAAATTTACATTTACTTTCTTACTATCTGAT 2211
|| ||||||||||||||| || | ||||||||||||
Sbjct 2075 TCTCTGTAAATTTACATTGACGATGTTACTATCTGAT 2111
Score = 612 bits (331), Expect = 4e-174
Identities = 404/437 (92%), Gaps = 14/437 (3%)
Strand=Plus/Plus
Query 5 TTTCTTCAATTTCGGTTAAACCATTTTCGTTCTTTCTTCTTTTAACAAGAAACCACCGCT 64
|||||||||||||||||||| || |||| ||||||||||||||||||| |||||||||||
Sbjct 1 TTTCTTCAATTTCGGTTAAAACA-TTTCTTTCTTTCTTCTTTTAACAACAAACCACCGCT 59
Query 65 CTGTACAAAACAAAGTCTCCGTCGTTTCTTCTCCGTTCTCCGGTCAA-TTCGAATTCCTC 123
||| |||||| ||| |||||||||||||||||||||||||||||||| || | |||||||
Sbjct 60 CTGAACAAAA-AAATTCTCCGTCGTTTCTTCTCCGTTCTCCGGTCAATTTTG-ATTCCTC 117
Query 124 --AGAGAGAAATTTGTGCTCGCGAGTTCCGCGTGAAATACATGGAAATGTTGGCGGCGTT 181
||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
Sbjct 118 AGAGAGAGAAATTTGTGTTCGCGAGTTCCGCGTGAAATACATGGAAATGTTGGCGGCGAT 177
Query 182 GGACTCGCG---TTCTTCTCTCCATCTTCATCGTTCCATGTCTCGCGTTGACCTTTTTGC 238
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 178 GGACTCGCGTTCTTCTTCTCTCCATCTTCATCGTTCCATGTCTCGCGTTGACCTTTTTGC 237
Query 239 CGGTGTTCGTATGAAACCATCTCCTACAAGTCCTGTTCCGAATACGCCTCGAATATGTGG 298
||||||||| ||||||||||| |||||||||||| | |||||||||||||||||||||||
Sbjct 238 CGGTGTTCGAATGAAACCATCCCCTACAAGTCCTCTACCGAATACGCCTCGAATATGTGG 297
Query 299 AAGTAAACTCTGTTGATTCGACTCTTCCTCTTCCCTTTAGTAGTTCCTCCG-TTTGTTTT 357
||| ||||||||||||||| |||||||||||||||||| ||||||| | || |||| |||
Sbjct 298 AAGCAAACTCTGTTGATTCCACTCTTCCTCTTCCCTTTGGTAGTTC-TGCGGTTTGCTTT 356
Query 358 TCCTTTGCATCTGAATTTCCAGATCCAATCGAAGCTGTGATTACCTGTAGCGTCTT-GTG 416
||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||
Sbjct 357 TCCTTTGCATCTGAATTTCGAGATCCAATCGAAGCTGTGATTACCGGTAGCGTCTTTGTG 416
Query 417 TAGTCTTATTT-TAGGT 432
||||||| ||| |||||
Sbjct 417 TAGTCTT-TTTCTAGGT 432
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87455202520
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5