BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28270.1
Length=880
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491946 jgi|Araly1|491946|fgenesh2_kg.7__1379__AT4G28270.1 1277 0.0
> Ahg491946 jgi|Araly1|491946|fgenesh2_kg.7__1379__AT4G28270.1
Length=835
Score = 1277 bits (691), Expect = 0.0
Identities = 789/837 (94%), Gaps = 4/837 (0%)
Strand=Plus/Plus
Query 32 TGTGTATAATAAGGTCTCCTGCTTCTGCACCACCCTCGATCTAAACATTCTTACCCCATT 91
||||||||||||||| || |||||||||||||||||||||||| | ||||||||||||||
Sbjct 1 TGTGTATAATAAGGTTTCATGCTTCTGCACCACCCTCGATCTATATATTCTTACCCCATT 60
Query 92 CTCTTAACCCAAATAAATCATTTTCTCTGTTCTTCTG-CCATTGTCGCATGAACCTGTAC 150
|||| ||| |||||||||| |||||||||||||| || ||||||||||||||||| |||
Sbjct 61 CTCTAAACACAAATAAATCTTTTTCTCTGTTCTT-TGACCATTGTCGCATGAACCAATAC 119
Query 151 AAGCTCTCTCAAGTTTCCAAAGGCTTAAAGACAGAAGAGATCCATCGGTACTTACAATCT 210
||||||||| ||||||||||||||| |||||||||||||||| |||||||||| ||||||
Sbjct 120 AAGCTCTCTGAAGTTTCCAAAGGCTCAAAGACAGAAGAGATCTATCGGTACTTGCAATCT 179
Query 211 TTCCAAAGATAAAATGGAGATTGAGAAGGATGAGGACGACACAACATTGGTTGATTCTGG 270
||||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct 180 TTCCAAAGATAAAATGGAGATAGAGAATGATGAGAACGACACAACATTGGTTGATTCTGG 239
Query 271 AGGAGACTTCGACTGCAACATATGTTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 330
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 240 AGGAGACTTCGACTGCAACATATGCTTGGATCAGGTTCGAGACCCGGTCGTGACTTTATG 299
Query 331 TGGCCACCTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCGTCCAACAATTCAAG 390
||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 300 TGGCCACTTGTTTTGTTGGCCCTGCATTCACAAGTGGACTTATGCCTCCAACAATTCAAG 359
Query 391 ACAACGAGTCGATCAATACGATCA-TAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 449
|||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 360 ACAACGCGTCGATCAATACGAT-AGTAAGAGGGAACCACCAAAATGTCCGGTATGCAAAT 418
Query 450 CTGATGTCTCCGAGGCTACGCTTGTCCCGATCTACGGACGAGGACAGAAAGCTCCCCAGT 509
| ||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||
Sbjct 419 CCGATGTCTCCGAGGCTACGCTTGTTCCGATCTACGGCCGAGGACAGAAAACTCCCCAGT 478
Query 510 CCGGTTCAAATGTACCGAGCAGACCAACTGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 569
||||||||| |||||||| |||||| | |||||||||||||||||||||||||||||||
Sbjct 479 CCGGTTCAACCGTACCGAGTAGACCATCCGGTCCGGTTTATGACTTAAGAGGAGTTGGTC 538
Query 570 AACGTTTAGGAGAAGGGGAGAGTCAACGTTACATGTATAGAATGCCTGATCCGGTGATGG 629
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 539 AACGTTTGGGAGAAGGGGAGAGTCAACGGTACATGTATAGAATGCCTGATCCGGTGATGG 598
Query 630 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGCAC 689
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 599 GTGTGGTATGCGAAATGGTATACCGGAGACTATTTGGAGAGTCTTCGAGCAACATGGTAC 658
Query 690 CTTACCGCGATATGAATGTCCGGTCTAGGCGACGGGCAATGCAGGCTGAGGAGTCATTAA 749
||||||| || | ||||||||||| ||||||||||||||||| |||||||||||| |||
Sbjct 659 CTTACCGTGACACAAATGTCCGGTCGAGGCGACGGGCAATGCAAGCTGAGGAGTCACTAA 718
Query 750 GCAGAGTCTACTTGTTTCTACTTTGCTTCATGTTTATGTGTCTATTTCTCTTCtaattat 809
|||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 719 GCAGAGTCTACTTGTTCCTACTTTGCTTCATGTTTATGTGTCTGCTTCTCTTCTAATTAT 778
Query 810 aatatatatgtgtatataatataccaattggaatgagtatgcatatatgtaataaca 866
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GATATATATATGTATATAATATACCAATTGGAATGAGTATGCATATATGTAATAACA 835
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32595094035
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5