BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28280.2 Length=654 Score E Sequences producing significant alignments: (Bits) Value Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1 634 0.0 > Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1 Length=823 Score = 634 bits (343), Expect = 0.0 Identities = 389/412 (94%), Gaps = 0/412 (0%) Strand=Plus/Plus Query 240 CATGCAAAGAAGATTTTGCGGCAAAGAATTACACAATCATAACGAGTAAATGCAAAGGAC 299 |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| Sbjct 412 CATGCAAAGAAGATTTTGCGGCCAAGAATTACACAATCATAACAAGTAAATGCAAAGGAC 471 Query 300 CAAATTACCCGGCCAAAGTATGTTGTTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG 359 ||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 472 CAAATTATCCGGCCAAGGTATGTTGCTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG 531 Query 360 AAGTTCTTAACGATGAAAAGACAGATTGTGCCTCCACAATGTTTAGCTACATCAATCTCT 419 ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 532 AAGTTCTTAACGACGAAAAGACAGATTGTGCCTCCACAATGTTCAGCTACATCAATCTCT 591 Query 420 ACGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGTCTCG 479 | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 592 ATGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGCCTCG 651 Query 480 ATTGCACCGACGTCACCCCTACATCATCTTCCCATGCATCGATCCCTCTTGTTTCCACAC 539 |||||||| |||||||| |||| || || ||||||| |||||||||| ||||||| |||| Sbjct 652 ATTGCACCAACGTCACCGCTACCTCTTCGTCCCATGTATCGATCCCTTTTGTTTCTACAC 711 Query 540 ACGTTTTGCTAATCACCGTTTCCATCTTGTTTCACCTCTTCTAAAGACTTGTAAATGTTA 599 ||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| Sbjct 712 ACGCTTTGCTAATCACCGTTTTCATCTTGTTTCGCCTCTTCTAAAGACTTGTAAATGTTA 771 Query 600 CAATATGAGTTATATATTGCATTCCATTGTTAGTTGCTTTGTGAGCATAGAT 651 |||||||||||||||||| ||||||||||||||||| ||||||| ||||||| Sbjct 772 CAATATGAGTTATATATTACATTCCATTGTTAGTTGTTTTGTGATCATAGAT 823 Score = 220 bits (119), Expect = 8e-57 Identities = 169/191 (88%), Gaps = 11/191 (6%) Strand=Plus/Plus Query 1 CCTCCTATAACTCTAATGgaaac-aggaaaaagaaaaaacaagaaacgattagaaactca 59 |||||||||| |||||||||||| || |||||| |||||||||||||| |||||| ||| Sbjct 1 CCTCCTATAATTCTAATGGAAACAAGAAAAAAG-AAAAACAAGAAACG-TTAGAATTTCA 58 Query 60 aatgtgacaaaaagtc----a-aaaaat--a-gaggaggaaacaaaaacATGAAGATTAC 111 |||||||||||| ||| | |||||| | |||||||||||| ||||||||||||||| Sbjct 59 AATGTGACAAAACGTCAAAAATAAAAATAAAGGAGGAGGAAACAGAAACATGAAGATTAC 118 Query 112 TCATCATTGTTTGGTTTCTCTTCTCTCTATCCTCCTTTTGTCTGGATTCGCTTTCTCTCA 171 |||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||| Sbjct 119 TCATCATTGTTTGGTTTCTCTTTTCTCAATCCTCCTTTTGTCTGGATTCGCCTTGTCTCT 178 Query 172 TCACATCTCTC 182 ||||||||||| Sbjct 179 TCACATCTCTC 189 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 23979314793 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5