BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28280.2

Length=654
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1         634    0.0  


> Ahg491945 jgi|Araly1|491945|fgenesh2_kg.7__1378__AT4G28280.1
Length=823

 Score =  634 bits (343),  Expect = 0.0
 Identities = 389/412 (94%), Gaps = 0/412 (0%)
 Strand=Plus/Plus

Query  240  CATGCAAAGAAGATTTTGCGGCAAAGAATTACACAATCATAACGAGTAAATGCAAAGGAC  299
            |||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct  412  CATGCAAAGAAGATTTTGCGGCCAAGAATTACACAATCATAACAAGTAAATGCAAAGGAC  471

Query  300  CAAATTACCCGGCCAAAGTATGTTGTTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG  359
            ||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct  472  CAAATTATCCGGCCAAGGTATGTTGCTCGGCCTTCAAGGACTTTGCTTGCCCATTCGCGG  531

Query  360  AAGTTCTTAACGATGAAAAGACAGATTGTGCCTCCACAATGTTTAGCTACATCAATCTCT  419
            ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct  532  AAGTTCTTAACGACGAAAAGACAGATTGTGCCTCCACAATGTTCAGCTACATCAATCTCT  591

Query  420  ACGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGTCTCG  479
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  592  ATGGTCGTTATCCTCCTGGAATATTCGCTAACATGTGCAAAGAAGGCAAAGAAGGCCTCG  651

Query  480  ATTGCACCGACGTCACCCCTACATCATCTTCCCATGCATCGATCCCTCTTGTTTCCACAC  539
            |||||||| |||||||| |||| || || ||||||| |||||||||| ||||||| ||||
Sbjct  652  ATTGCACCAACGTCACCGCTACCTCTTCGTCCCATGTATCGATCCCTTTTGTTTCTACAC  711

Query  540  ACGTTTTGCTAATCACCGTTTCCATCTTGTTTCACCTCTTCTAAAGACTTGTAAATGTTA  599
            ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct  712  ACGCTTTGCTAATCACCGTTTTCATCTTGTTTCGCCTCTTCTAAAGACTTGTAAATGTTA  771

Query  600  CAATATGAGTTATATATTGCATTCCATTGTTAGTTGCTTTGTGAGCATAGAT  651
            |||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct  772  CAATATGAGTTATATATTACATTCCATTGTTAGTTGTTTTGTGATCATAGAT  823


 Score =  220 bits (119),  Expect = 8e-57
 Identities = 169/191 (88%), Gaps = 11/191 (6%)
 Strand=Plus/Plus

Query  1    CCTCCTATAACTCTAATGgaaac-aggaaaaagaaaaaacaagaaacgattagaaactca  59
            |||||||||| |||||||||||| || |||||| |||||||||||||| ||||||  |||
Sbjct  1    CCTCCTATAATTCTAATGGAAACAAGAAAAAAG-AAAAACAAGAAACG-TTAGAATTTCA  58

Query  60   aatgtgacaaaaagtc----a-aaaaat--a-gaggaggaaacaaaaacATGAAGATTAC  111
            |||||||||||| |||    | ||||||  | |||||||||||| |||||||||||||||
Sbjct  59   AATGTGACAAAACGTCAAAAATAAAAATAAAGGAGGAGGAAACAGAAACATGAAGATTAC  118

Query  112  TCATCATTGTTTGGTTTCTCTTCTCTCTATCCTCCTTTTGTCTGGATTCGCTTTCTCTCA  171
            |||||||||||||||||||||| |||| ||||||||||||||||||||||| || |||| 
Sbjct  119  TCATCATTGTTTGGTTTCTCTTTTCTCAATCCTCCTTTTGTCTGGATTCGCCTTGTCTCT  178

Query  172  TCACATCTCTC  182
            |||||||||||
Sbjct  179  TCACATCTCTC  189



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23979314793


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5