BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28310.1
Length=801
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491941 jgi|Araly1|491941|fgenesh2_kg.7__1374__AT4G28310.1 876 0.0
> Ahg491941 jgi|Araly1|491941|fgenesh2_kg.7__1374__AT4G28310.1
Length=681
Score = 876 bits (474), Expect = 0.0
Identities = 617/685 (90%), Gaps = 14/685 (2%)
Strand=Plus/Plus
Query 2 ATCTCTCATTCATCATCCTCTTTTTTCAATCTCGTTTAA-AATTAACATAATGATGACGC 60
||||||||||||||||| ||||| | ||| | | || | | |||| |||||||||||
Sbjct 1 ATCTCTCATTCATCATCATCTTTCTGAAAT-TAACTCAATAGTAAACACAATGATGACGC 59
Query 61 CAGTGAAGAAAAGTATCGCCATTAGACCGGTGT-CGTTCTACGGAAACGGGCTTCCTCGT 119
| |||||||||| | || ||||||||||||| | | ||||| |||||||||||||| ||
Sbjct 60 CGGTGAAGAAAAATGTCTCCATTAGACCGGT-TACTTTCTATGGAAACGGGCTTCCCCGA 118
Query 120 CCTCGTTTCTTCGATAATCCTAAGTTCAATGATTACCGTGTTGATCCTCCCCTCTCTGTG 179
||||||||||| ||||||||||||||||| | |||||||||||||||||| | ||||||
Sbjct 119 CCTCGTTTCTTTGATAATCCTAAGTTCAACGCTTACCGTGTTGATCCTCCAGTTTCTGTG 178
Query 180 CTAGATCCTCTTCTCTCATGGGCGAGAGACGCTCACTGGTCAATGGGTGGTCTCAACTTC 239
|| ||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 179 CTTGATCCGCTTCTCTCATGGGCTAGAGACGCTCACTGGTCCATGGGTGGTCTCAACTTC 238
Query 240 ACGCGTCTCCGTCTCCAAGGCCGGATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 299
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 239 ACGCGTCTCCGTCTCCAAGGCCGAATCGAAGGAAACGTCAACAAGCTCCGTGCACAGCTT 298
Query 300 GAGAAATCCACCCCTGTGAAACTCGAATCTGGAAGGAAGAAGAAGAGATCTGGTTCTGAG 359
|||||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 299 GAGAAATCTAGCCCTGTGAAACTCGAATCTGGAATGAAGAAGAAGAGATCTGGTTCTGAG 358
Query 360 TCTCCTCCTTCTGCTCCGATTGTGGTGAAACGAAGGAGGTACTTAGATCTGAACGATTCT 419
||||||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||
Sbjct 359 TCTCCTCCTGCTGCTCCCATTGTGCTGAAACGAAGGAGGTACTTAGATCTCAACGATTCT 418
Query 420 GATGATGA-G-G-AAGTCGGATCTGAAGATGAAGGTGTGGTTAGAATCAGGAGAAAACTC 476
|||||||| | | ||||||||||||||||||||||||| || ||||||| ||||||||||
Sbjct 419 GATGATGATGAGGAAGTCGGATCTGAAGATGAAGGTGTTGTGAGAATCAAGAGAAAACTC 478
Query 477 TCTGATGATTTTGATAGAGTCGCTGAAGAAAGCAAGACTAAACTTGTTGAAGCTAACAAG 536
|||||||||||||||||||| |||| ||| |||||||| |||||||||||||| ||||||
Sbjct 479 TCTGATGATTTTGATAGAGTTGCTGGAGAGAGCAAGACCAAACTTGTTGAAGCCAACAAG 538
Query 537 AAATCGATTAAATCTGAGTTTGTGGAGAAGAAGAGATTGATTGAGAAGAAGAAGA---TC 593
|||||||||||||||||||| |||||||||| |||||||| ||||||||||||| ||
Sbjct 539 AAATCGATTAAATCTGAGTTAGTGGAGAAGACGAGATTGAAGGAGAAGAAGAAGAAGATC 598
Query 594 GTA-AAAGTTAACAAGACAAGTTCAACGAGGTCATCTCCAAGACTGGCTAAGCGTAGCTC 652
| | ||| | ||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 599 G-ACAAACTGAACAAGACAAGTTCAACGAGGTCATCTCCAAGATTGGCGAAGCGTAGCTC 657
Query 653 TAATTAGTTTTCA-TATTTAGTCTC 676
|| |||||||||| | |||||||||
Sbjct 658 TAGTTAGTTTTCAGT-TTTAGTCTC 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29583383592
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5