BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28320.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491940 jgi|Araly1|491940|fgenesh2_kg.7__1373__AT4G28320.1 2272 0.0
Ahg480902 jgi|Araly1|480902|fgenesh2_kg.3__3603__AT2G20680.1 1157 0.0
> Ahg491940 jgi|Araly1|491940|fgenesh2_kg.7__1373__AT4G28320.1
Length=1581
Score = 2272 bits (1230), Expect = 0.0
Identities = 1409/1493 (94%), Gaps = 22/1493 (1%)
Strand=Plus/Plus
Query 171 TTTTTCTTCTGGGTGGGCACCGACT-AAA-AAAGGAGCTCTTTCTCCAATTCTGGGTTTG 228
||||||||||||||||||||||||| ||| ||| || || ||||||||||||||||||||
Sbjct 109 TTTTTCTTCTGGGTGGGCACCGACTAAAACAAAAGAACTGTTTCTCCAATTCTGGGTTTG 168
Query 229 AAATTTCtgtgtgtgtgtgtgtgAAGCAGTGAAGCAGGAGGTGGCAGAAGCATGGTTCCC 288
||| | | ||||||||||||||| | | | || | |||||||||||||||||
Sbjct 169 AAA------T-T-TGTGTGTGTGAAGCA--G--G-A-GA--TAGCAGAAGCATGGTTCCC 212
Query 289 ACAAGGAACAGGCCAATGCTACGAATTCTAGGtttttttATATGTGCAGCTTTCATCTAT 348
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 213 ACAAGGAACAGGCCAATGCTACGAATTCTAGGGTTTTTTATATGTGCAGCTTTCATCTAT 272
Query 349 CTATCATTTCGAGATTTGTGGTTGAATCACAAAGGGAAAGCAAAGTTAGGGTTTGTGAAA 408
|||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 273 TTATCATTTCGGGATTTATGGTTGAATCACAAAGGGAAAGCAAAGTTAGGGTTTGTGAAA 332
Query 409 AGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTTTATGTAAATGGGTGGAACTCG 468
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 333 AGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTCTATGTAAATGGTTGGAACTCG 392
Query 469 TATTGGTTCATGGACCATGCGGTTGATGAACATAGCAGAAACCTTGTCGGTGAAATGCTT 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 TATTGGTTCATGGACCATGCGGTTGATGAACATAGCAGAAACCTTGTCGGTGAAATGCTT 452
Query 529 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAATGACGGTGGC 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGGGCTTTCAATGACGGTGGC 512
Query 589 TACAATGCTCTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCAGGCTTTGGAT 648
|| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 513 TATAATGCACTTCAGATCTCTCCTGGCCGATTCGATGAGCGAGTCTTTCAGGCTTTGGAT 572
Query 649 CATGTAATTGCAGAAGCGAGAAAGCATGATGTTAGATTGTTGCTTAGCTTAGTGAACAAC 708
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 573 CATGTAATTGCAGAAGCGAGAAAGCATGATGTTAGATTGCTGCTTAGCTTAGTGAACAAC 632
Query 709 TTGCAAGCTTATGGAGGGAAGACTCAGTATGTGAAATGGGCATGGCAAGAAGGTGTTGGT 768
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 633 TTGCAAGCTTATGGAGGGAAGACACAGTATGTGAACTGGGCATGGCAAGAAGGTGTTGGT 692
Query 769 CTTAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCAATTACTTCAAGAAT 828
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 GTCAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCTATCCGCAATTACTTCAAGAAT 752
Query 829 TATCTCAAGGTTCTGCTCACCAGGAAGAACTCTGTAACGGGAATAGAGTACAGAAACGAT 888
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 753 TATCTCAAGGTTCTGCTCACCAGGAAGAACTCGGTAACTGGAATAGAGTACAGAAACGAT 812
Query 889 CCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGCACGACTGATGTCTCTGGC 948
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 813 CCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTCGATGTACGACTGATGTCTCTGGC 872
Query 949 AAAACTCTCCAAGATTGGATAGACGAAATGACGGGATTCATTAAGTCAATCGATGACAAG 1008
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 873 AAAACTCTCCAAGACTGGATAGAAGAAATGACGGGATTCATTAAATCAATCGATGACAAG 932
Query 1009 CATCTCCTCACAGTAGGTCTGGAAGGCTTCTATGGTCCTAATAGCCCGAAAGGGCTCACA 1068
||||||||||||||||| |||||||| |||||||||||||| ||||||||| ||||||||
Sbjct 933 CATCTCCTCACAGTAGGCCTGGAAGGTTTCTATGGTCCTAACAGCCCGAAACGGCTCACA 992
Query 1069 GTTAATCCAGAACAGTGGGCATCCCAGCTCGGAACAGACTTTGTTCAAAACTCTAACTCC 1128
|||||||||||||||||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 993 GTTAATCCAGAACAGTGGGCTTCCGAGCTCGGAACAGACTTTGTTCAAAACTCTAATTCC 1052
Query 1129 TCAAACATAGATTTTGCATCCGTTCATATCTACCCTGATCACTGGTTTCATAATCAGACA 1188
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1053 TCAAACATTGATTTTGCATCCGTTCATATCTACCCCGATCACTGGTTTCATAATCAGACC 1112
Query 1189 TTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCACATAGAAGATGGATTG 1248
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1113 TTTGAAGAGAAGCTAAAGTTTGTGGTGAAATGGATGCAATCTCACATTGAAGATGGCTTT 1172
Query 1249 AAAGAACTAAAGAAGCCAGTTCTCTTCACAGAGTTTGGCCTATCAAACCAGAACAAGGAC 1308
|||||||| ||||||||||||||||||||||||||||| || || |||| ||||||||||
Sbjct 1173 AAAGAACTCAAGAAGCCAGTTCTCTTCACAGAGTTTGGGCTCTCGAACCTGAACAAGGAC 1232
Query 1309 TACGAACCATCGCAGCGAGATAAGTTCTACAGAATCATCTTCGACGTGGTTTACAAATCA 1368
||||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 1233 TACGAACCATCTCAGCGAGAGAAATTCTACAGAATCATCTTCGATGTGGTTTACAAATCA 1292
Query 1369 GCCAAAAGAAAGAAGTCAGGTGCAGGCACATTAGTGTGGCAGCTATTCATGGAAGGCATG 1428
||||| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||
Sbjct 1293 GCCAAGCGAAAGAAGTCAGGTGCAGGCACATTGGTGTGGCAACTATTCATGGATGGCATG 1352
Query 1429 GAAACATTCAACGATGACTTTGGGATTGTTCCACATGAACAAGATTCCATTTACAAATTG 1488
||||| |||| |||||||||||| || ||||| |||||||||||||||||||| ||||||
Sbjct 1353 GAAACTTTCAGCGATGACTTTGGAATCGTTCCTCATGAACAAGATTCCATTTATAAATTG 1412
Query 1489 ATGATAGAACAATCTTGCAGATTGGGTAAAGTCACAGGACGTCTTAAGGAACAAAAGTTG 1548
|||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||
Sbjct 1413 ATGATAGAACAATCTTGCAGGTTGGGAAAAGTCACAGGACGTCTTAAGGAACAGAACTTG 1472
Query 1549 AAAGAACTTTGTTCTCACAGACATTGAGAGAATCACATGTAAACTGTCTTTTTTCTCTAC 1608
||||||||||||||||||| |||||||||||||||||||||||||||||||||| | ||
Sbjct 1473 AAAGAACTTTGTTCTCACAAACATTGAGAGAATCACATGTAAACTGTCTTTTTT-T--AC 1529
Query 1609 AGTGAAATCTGATTCTCATTTTTGTTGTATACAAGAATCAACTCAGTGAGTAA 1661
||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1530 AGTGAAATCTGATTCTCATTTTTGTTGTATACA-GAATTAACTCAGTGAGTAA 1581
Score = 89.8 bits (48), Expect = 6e-17
Identities = 60/66 (91%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 76 AAATCTTTGCTAATTTTCTACAAACGATTGATTTTTCCGTCTGGGTTTTATAAAAGGTTT 135
|||| |||| |||||||||| ||| |||||||||||||||||||||||||||||| ||||
Sbjct 46 AAATATTTGTTAATTTTCTATAAAGGATTGATTTTTCCGTCTGGGTTTTATAAAAAGTTT 105
Query 136 GGGTTT 141
|| |||
Sbjct 106 GGATTT 111
> Ahg480902 jgi|Araly1|480902|fgenesh2_kg.3__3603__AT2G20680.1
Length=1599
Score = 1157 bits (626), Expect = 0.0
Identities = 1065/1275 (84%), Gaps = 38/1275 (3%)
Strand=Plus/Plus
Query 274 AGAAGCATGGTTCCCACAAGGAACAGGCCAATGCTACGAATTCTAGGtttttttATATGT 333
||| |||||| ||| ||| ||||| ||||| || ||| ||| ||||||||| ||| ||||
Sbjct 293 AGAGGCATGGCTCCTACAGGGAACGGGCCAGTGATACCAATCCTAGGTTTTCTTACATGT 352
Query 334 GCAGCTTTCATCTATCTATCATTTCGAGATTTGTGGTT-GA-ATCACAAAGGGAAAGCAA 391
| ||||| |||||||| || ||| | ||||||||||| || ||| ||||||| ||
Sbjct 353 GTGGCTTTTATCTATCTCTCGTTTGGTGATTTGTGGTTCGATTTCA-AAAGGGAGGGC-G 410
Query 392 AGTTAGGGTTTGTGAAAAGGAACGGAACTCAGTTTGTGGTGGATGATAAGCCTCTTTATG 451
|||||||||| |||||| ||||||| || ||||||||||| |||| |||| |||| ||||
Sbjct 411 AGTTAGGGTTCGTGAAACGGAACGGGACACAGTTTGTGGTCGATGGTAAGGCTCTGTATG 470
Query 452 TAAATGGGTGGAACTCGTATTGGTTCATGGACCATGCGGTTG-ATGAACATAGCAGAAAC 510
| ||||| |||||||| |||||||||||||||||||| | || |||| ||||||||| ||
Sbjct 471 TGAATGGTTGGAACTCTTATTGGTTCATGGACCATGCTG-TGAATGATCATAGCAGACAC 529
Query 511 CTTGTCGGTGAAATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACTTGG 570
| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 530 CGTGTCGGTGCTATGCTTGAAGCTGGAGCTAAAATGGGTCTCACTGTTTGTAGAACATGG 589
Query 571 GCTTTCAATGACGGTGGCTACAATGCTCTTCAGATCTCTCCTGGCCGATTCGATGAGCGA 630
||||| ||||| || ||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 590 GCTTTTAATGATGGAGGCTACAATGCTCTTCAGATCTCTCCTGGTAGATTCGATGAACGA 649
Query 631 GTCTTTCA-GGCTTTGGATCATGTAATTGCAGAAGCGAGAA-AGCATGATGTTAGATTG- 687
||||| || |||||||||||||||||| ||||| || | || | |||| |||||| |||
Sbjct 650 GTCTT-CAAGGCTTTGGATCATGTAATCGCAGAGGCAAAAACA-CATGGTGTTAGGTTGC 707
Query 688 TTGCTTAGCTTAGTGAACAACTTGCAAGCTTATGGAGGGAAGACTCAGTATGTGAAATGG 747
|| || ||||||||||| ||||| |||||||||||||||||||||||||| || || |||
Sbjct 708 TT-CTGAGCTTAGTGAATAACTTACAAGCTTATGGAGGGAAGACTCAGTACGTCAATTGG 766
Query 748 GCATGGCAAGAAGGTGTTGGTCTTAGTTCTTCCAATGATTCCTTCTTCTTTGATCCATCT 807
|||||||| |||||||| || || || || ||||||||||||||||||||||| ||||||
Sbjct 767 GCATGGCAGGAAGGTGTAGGCCTCAGCTCGTCCAATGATTCCTTCTTCTTTGACCCATCT 826
Query 808 ATCCGCA-ATTACTTCAAGAATTATCTCAAGGTTCTGCTCACCAGGAAGAACTCTGTAAC 866
||||||| || |||||||||||||||| | ||| ||||| ||| | || |||||| ||||
Sbjct 827 ATCCGCAGAT-ACTTCAAGAATTATCTGACGGTGCTGCTGACCCGCAAAAACTCTTTAAC 885
Query 867 -GGGAATAGAGTACAGAAACGATCCTACGATTTTCGCTTGGGAGTTGATAAACGAGCCTC 925
|||| | |||||||||||||| || || ||||| || ||||| ||||||||||||||||
Sbjct 886 CGGGATT-GAGTACAGAAACGACCCAACAATTTTTGCATGGGAATTGATAAACGAGCCTC 944
Query 926 GATGCACGACTGATGTCTCTGGCAAAACTCTCCAAGATTGGAT-AGACGAAATGACGG-G 983
| |||| | ||||||||||||| | ||||| ||||| ||||| | |||||||||| | |
Sbjct 945 GCTGCATGTCTGATGTCTCTGGGGATACTCTACAAGACTGGATTA-ACGAAATGACAGCG 1003
Query 984 ATTCATTAAGTCAATCGATGACAAGCATCTCCTCACAGTAGGTCT-GGAAGGCTTCTATG 1042
|||||||| ||||| || |||||||||| || || ||||| || |||||| ||||| |
Sbjct 1004 -TTCATTAAATCAATTGACAACAAGCATCTTCTAACCGTAGG-CTTGGAAGGGTTCTACG 1061
Query 1043 GTCCTAATAGCCCGAAAGGGCTCACAGTTAATCCAGAACAGTGGGCATCCCAGCTCGGAA 1102
|||| |||| ||| ||| |||| |||||||| || |||| |||||| || |||| ||
Sbjct 1062 GTCCCAATAACCCTAAACGGCTGACAGTTAACCCGGAACGGTGGGCCTCTGAGCTTGGGT 1121
Query 1103 CAGACTTTGTTCAAAACTCTAACTC-CTCAAACATAGATTTTGCATCCGTTCATATCTA- 1160
|||| ||||||| ||||||| | || | ||||||| ||||||||||| |||||||||||
Sbjct 1122 CAGATTTTGTTCGAAACTCTGATTCGC-CAAACATCGATTTTGCATCAGTTCATATCTAT 1180
Query 1161 CCCTGATCACTGGTTTCATAATCAGACATTTGAAGAGAAGCTAAAGTTTGTGGTGAAATG 1220
||| |||||||||||||| ||||| |||||||| || || |||||||||||||||||
Sbjct 1181 CCC-GATCACTGGTTTCACGATCAGGGGTTTGAAGAAAAACTCAAGTTTGTGGTGAAATG 1239
Query 1221 GATGCAATCTCACATAGAAGATGGATTGA-AAG-AACTAAAGAAGCCAGTTCTCTTCACA 1278
||||| ||||||||| |||||||| || ||| |||| |||||||| ||||| |||||
Sbjct 1240 GATGCTATCTCACATTGAAGATGGG--GACAAGGAACTGAAGAAGCCTGTTCTGTTCACC 1297
Query 1279 GAGTTTGGCCTATCAAACCAGAACAAGGACTACGAACCATCGCAGCGAGATAAGTTCTAC 1338
||||||||||| || || | |||||| ||||| || ||||||||||| ||| |||||||
Sbjct 1298 GAGTTTGGCCTCTCGAATCTGAACAAAGACTATGATCCATCGCAGCGGGATCGGTTCTAC 1357
Query 1339 AGAATCATCTTCGACGTGGTTTACAAATCAGCCAAAAGAAAGAAGTCAGGTGCAGGCACA 1398
|||| |||||| || || |||||||||||||||| | ||| ||| ||||||||||||
Sbjct 1358 AGAACCATCTTTGATGTTATTTACAAATCAGCCAAGCGGAAGCGGTCTGGTGCAGGCACA 1417
Query 1399 TTAGTGTGGCAGCTATTC--ATGGAAGGCATGGAAACATTCAACGATGACTTTGGGATTG 1456
||||||||||| | ||| || |||||||||||| ||||||||||||||||| || |
Sbjct 1418 CTAGTGTGGCAG-T-TTCTGATAGAAGGCATGGAAGGTTTCAACGATGACTTTGGAATAG 1475
Query 1457 TTCCACATG--AACAAGATTCCATTTACAAATTGATGATAGAACAATCTTGCAGATTGGG 1514
| || | || |||||||||||||| | | ||| ||||| ||||| |||||||||||| |
Sbjct 1476 T-CC-CGTGGGAACAAGATTCCATTCAGAGATTAATGATTGAACAGTCTTGCAGATTGAG 1533
Query 1515 TAAAGTCACAGGACG 1529
| |||||| |||||
Sbjct 1534 TCGAGTCACTGGACG 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5