BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28330.1
Length=601
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491939 jgi|Araly1|491939|fgenesh2_kg.7__1372__AT4G28330.1 924 0.0
> Ahg491939 jgi|Araly1|491939|fgenesh2_kg.7__1372__AT4G28330.1
Length=589
Score = 924 bits (500), Expect = 0.0
Identities = 562/592 (95%), Gaps = 3/592 (1%)
Strand=Plus/Plus
Query 1 TACCATAACTTCACCAAACCAGACACAGAATCATAAGATCAGATCTGGTGTTCTCAAATA 60
||||||||||| ||||||||||||||||| |||||||||||||||||||| | |||||||
Sbjct 1 TACCATAACTTTACCAAACCAGACACAGAGTCATAAGATCAGATCTGGTG-T-TCAAATA 58
Query 61 TGGCGGATAAGGAAGAACCAGAGACGATGACCTCGTACAAGTTGTTTTTGAGAGTTATAA 120
|||| || |||||||||| |||||| ||||||||||||||| ||||||||||||||||||
Sbjct 59 TGGCTGACAAGGAAGAACAAGAGACCATGACCTCGTACAAGCTGTTTTTGAGAGTTATAA 118
Query 121 GCAAGAGAAGAACATGGGCCTGTCTGTTTCTTGTAGTCTACGCGATCCTATTGTCTTCTT 180
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 119 GCAAGAGAAGAACATGGGCTTGTCTGTTTCTTGTAGTCTACGCGATCCTTTTGTCTTCTT 178
Query 181 CATGGAATTCGTTGAATTCAATAGTTAATTGGTACGGAGAGAATCATCAGACATCATCTG 240
||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 179 CATGGAATTCGTTGAATTCGATAGTGAATTGGTACGGAGAGAATCATCAGACATCATCTG 238
Query 241 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTTTATCTATGG 300
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 239 GTTTGCCTGCGATTTACGCGTCGGTGCTTCTTGGTGCGGTGTTCGGAGTTCTGTCTATGG 298
Query 301 CGGCGGCGCTGTTCATAGCCGTGCCTGCGATCGTGGTGATCTGGATATCAGTGGTGGTGA 360
||||||||||||||||||| || || |||||||| |||||||||||||| ||||||||||
Sbjct 299 CGGCGGCGCTGTTCATAGCTGTTCCGGCGATCGTTGTGATCTGGATATCGGTGGTGGTGA 358
Query 361 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CGATGGCGTTCGCCGGAAAATCTAGGAAGAGAGTGGTGATTGAAGGAAGGAAAGTGACGA 418
Query 421 AAGAGATCGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAactttgtggctcttc 480
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 AAGAGATTGCTGGTTTTGTGTTTAGGGTTCTTCTTAAAGAAGGAAACTTTGTGGCTCTTC 478
Query 481 tttgtgctcttcttgcttacttcgtcttctttaactcttactcttcatcttcttGATTCG 540
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 TTTGTGCTCTTCTTGCTTACTTTGTCTTCTTTAACTCTTACTCTTCATCTTCTTGATTCG 538
Query 541 tttttttGAATTCTTGTCATTAACGAAAACATTCACAGCTAGTATATTGAAA 592
||||| | ||| || ||||||||||||||||||||| ||| ||||| ||||
Sbjct 539 ATTTTT-GCATTTTTTTCATTAACGAAAACATTCACAACTAATATATCGAAA 589
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22015774853
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5