BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28350.1
Length=1950
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328861 jgi|Araly1|328861|fgenesh1_pm.C_scaffold_7001088 2909 0.0
> Ahg328861 jgi|Araly1|328861|fgenesh1_pm.C_scaffold_7001088
Length=1926
Score = 2909 bits (1575), Expect = 0.0
Identities = 1832/1953 (94%), Gaps = 30/1953 (2%)
Strand=Plus/Plus
Query 1 ATGTTCTCTAAAGTTTCCATTCTTCTCTTTTCCCTCGCATCCCTACTCTTGTTCCGATCA 60
|||||||| |||||||||||| || |||||| | || ||||| |||| ||||||||||||
Sbjct 1 ATGTTCTCGAAAGTTTCCATTTTTATCTTTTTCGTCACATCCATACTGTTGTTCCGATCA 60
Query 61 ACCACAGGCATCGAATTCATCTACAACTCCAATTTCACCACAACCAACACACTTCTCCTC 120
|||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACCACATGCGTCGAATTCATCTACAACTCCAATTTCACCACCACCAACACACTTCTCCTC 120
Query 121 GGCAACGCCACTGTTAAATCTCCACCGTCGATCCTCACCCTCACCAACCAAACCACTTTC 180
||||||||||| ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 121 GGCAACGCCACCGTTAATTCTCCGCCGTCGATCCTCACCCTCACCAACCAAACCACTTTC 180
Query 181 TCCATCGGACGTGGCCTCTACCCTTCAAGAATCAACGCCTCCTCCTCCTCTGCCTCGCCG 240
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 181 TCCATCGGACGTGGCCTCTACCCTTCAAGAATCAACG---CCTCCTCCTCTGCCTCGCCT 237
Query 241 TTACCTTTCGCCACATCATTCATCTTCTCCATGGCTCCTTTTAAACA-CCTCTCTCCTGG 299
||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||
Sbjct 238 TTACCTTTCGCCACATCATTCATCTTCTCCATGGCTCCTTTCAAA-AGCCTCTCTCCTGG 296
Query 300 CCACGGCTTCGCCTTCGTCTTCCTTCCTTTCTCCGAAACCTCCGCCGCAAGCTCATCTCA 359
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 297 CCACGGCTTCGCCTTCGTCTTCCTCCCTTTCTCCGAAACCTCCGCCGCTAGCTCATCTCA 356
Query 360 GCATCTCGGCCTCTTCAACTTCACCAATAACGGTGACCCCAATAGCCGAATCTTCGCCGT 419
||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 357 GCATCTCGGCCTCTTCAACTTCACCAATAACGGCGACCCCAACAGCCGAATCTTCGCCGT 416
Query 420 TGAATTCGATGTTTTCGCTAACCAAGAGTTCAACGACATCAACGACAACCACGTCGGCGT 479
||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 417 AGAATTTGATGTTTTCCCTAACCAAGAGTTCAACGACATCAACGGCAACCACGTCGGCGT 476
Query 480 CGACGTCAATTCTCTCACTTCCGTTGCATCTGAAACTGCAGGTTTCTATGGAGGCAGAGA 539
|||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 477 CGACGTCAATTCCCTCACTTCCGTTGCATCTGAAACTGCAGGTTTCTATGGAGGAAGAGA 536
Query 540 CGGCCAGAGATTCACGGAGCTGAAGCTTAACAGTGGCGAGAATTATCAGGCGTGGATCGA 599
|||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||
Sbjct 537 CGGCGAGAGATTCACGGAGCTGAGGCTTAACAGTGGCGAGAATTACCAGGCGTGGATTGA 596
Query 600 GTTTAATGGGTCAGCGATCAATGTCACGATGGCTAGAGCTAGCTCTAGAAAGCCCATAAG 659
|||| |||||||||| |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 597 GTTTGATGGGTCAGCCATCAATGTCACGATGGCTAGAGCTGGCTCTAGAAAGCCCATAAG 656
Query 660 ACCACTCATAAGCATTCCATTAAATCTCACTGGAGTCTTACTTGATGATATGTTCGTTGG 719
||||||||||||||||||||| || ||||||||||| |||||||||||||||||||||||
Sbjct 657 ACCACTCATAAGCATTCCATTGAACCTCACTGGAGTTTTACTTGATGATATGTTCGTTGG 716
Query 720 ATTCACTGCCTCCACAGGACAACTAGTGCAGAGCCATAGGATTCTCTCATGGAGTTTTAG 779
||||||||| ||||||||||||||||| |||||||||||||||||||||| | | ||
Sbjct 717 ATTCACTGCATCCACAGGACAACTAGTACAGAGCCATAGGATTCTCTCAT-G-G----AG 770
Query 780 TAACTCCAATTTCTCCATTGGTGACTCTGTTTTGAAGTCTAAAGGCTTCATTGCTGGGGT 839
||| | | ||||||||||||| |||||||||||||||||||||| |||
Sbjct 771 ---------TTT-T--A---GTGACTCTGTTTTAAAGTCTAAAGGCTTCATTGCTGTGGT 815
Query 840 CTCTAGTGGTGTTGTGTTGCAGAGACTAGAAGGAGACGTGGAAGATTGGGAAACAGAGTA 899
||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 816 TTCTAGTGGTGTTGTGTTGCAGGGACTAGCAGGAGACGTGGAAGATTGGGAAACAGAGTA 875
Query 900 TTGGCCTCACAGAGTGCAATACAAAGATGTTTTGGAAGCAACAAAAGGGTTTTCCGATGA 959
||||||||||||||||||||||||||| |||||||||||||| || |||||||| || |
Sbjct 876 TTGGCCTCACAGAGTGCAATACAAAGACGTTTTGGAAGCAACCAAGGGGTTTTCAGAAGT 935
Query 960 GAACATGATCGGATACGGAGGGAATTCTAAAGTGTACAGGGGAGTGTTGGAAGGTAAAGA 1019
||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||
Sbjct 936 GAACATGATCGGATACGGAGGGAATTCTACGGTGTATAGAGGAGTGTTGGAAGGTAAAGA 995
Query 1020 AGTTGCGGTTAAGAGAATAATGATGAGTCCTCGAGAGAGCGTTGGCGCGACGAGTGAGTT 1079
||| ||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||
Sbjct 996 AGTGGCGGTTAAGAGAATAATGATGAGCCCTAGAGAGAGCGTTGGCGCGACGAGTGAATT 1055
Query 1080 CTTAGCTGAGGTCTCGAGCTTAGGGAGGTTGAGACACAAGAATATAGTTGGACTAAAAGG 1139
||| || ||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 1056 CTTGGCCGAGGTCTCGAGCTTAGGGAGGTTAAGGCACAAGAATATAGTTGGACTAAAAGG 1115
Query 1140 TTGGTCTAAGAAAGGAGGAGAGAGTCTGATATTGATTTACGAGTATATGGAGAATGGAAG 1199
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1116 TTGGTCCAAGAAAGGAGGAGAGAGTCTGATATTGATTTACGAATATATGGAGAATGGAAG 1175
Query 1200 TGTCGATAAGCGGATATTTGATTGTAACGAGATGTTGAATTGGGAGGAAAGAATGAGAGT 1259
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1176 TGTCGATAAGCGGATATTTGATTGCGATGAGATGTTGAATTGGGAGGAAAGAATGAGAGT 1235
Query 1260 GATAAGAGACCTAGCCTCAGGGATGTTGTATCTACACGAAGGGTGGGAGACAAAGGTGTT 1319
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1236 GATAAGAGACCTAGCCTCAGGGATGTTGTATCTACACGAAGGGTGGGAGTCAAAGGTGTT 1295
Query 1320 ACATAGAGATATAAAGTCAAGCAATGTGTTGCTTGACAAGGATATGAACGCGAGGGTAGG 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1296 ACATAGAGATATAAAGTCAAGCAATGTGTTGCTTGACAAGGATATGAACGCGAGGGTAGG 1355
Query 1380 TGATTTTGGGTTGGCTAAGTTGCAGAACACTAGTAAAGAGATGGTTAGCACGACACATGT 1439
|||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct 1356 TGATTTCGGGCTGGCTAAGTTGCAGAACACTAGTAAAGAAATGGTTAGCACGACACACGT 1415
Query 1440 TGTTGGAACAGCGGGTTATATGGCGCCTGAGTTGGTTAAGACAGGGAGAGCATCAGCGCA 1499
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1416 GGTTGGAACAGCGGGTTATATGGCGCCTGAGCTGGTTAAGACAGGGAGAGCATCAGCGCA 1475
Query 1500 AACCGATGTGTATAGCTTTGGAGTGTTTGTGTTGGAGGTAGTGTGTGGAAGGAGGCCAAT 1559
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1476 GACCGATGTGTATAGCTTTGGAGTGTTTGTGTTGGAGGTAGTGTGTGGAAGGAGGCCAAT 1535
Query 1560 AGAGGAAGGAAGAGAAGGGATAGTGGAATGGATATGGGGACTAATGGAGAAAGACAAAGT 1619
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1536 AGAGGAAGGAAGAGAAGGGATAGTGGAATGGATGTGGGGACTAATGGAGAAAGACAAAGT 1595
Query 1620 GGTTGATGGTTTAGACGAGAGAATAAAGGCGA-ATGGA-GTGTTCGTGGTCGAGGAAGTG 1677
|||||||||||||||||||||||||||||||| | ||| | ||| | | |||||||||
Sbjct 1596 GGTTGATGGTTTAGACGAGAGAATAAAGGCGAGA-GGAAG-GTTTGAGACCGAGGAAGTA 1653
Query 1678 GAGATGGCTCTGAGAATAGGACTGTTGTGTGTGCATCCTGATCCGAGAGTGCGTCCGAAG 1737
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1654 GAGATGGCTCTGAGAATAGGACTGTTGTGTGTGCATCCTGATCCGAGGGTGCGTCCAAAT 1713
Query 1738 ATGAGACAAGTGGTGCAGATATTGGAACAAGGGAGATTAGTGGAGGATGGTGGTGAAAGG 1797
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 1714 ATGAGACAGGTGGTGCAGATATTAGAACAAGGGAGATTAGTGGAGGATGGTGGTGAGAGG 1773
Query 1798 GAAATAAGCTTGTTGGAGAGAGTGAAGAGCTCTTACTTGTTGGAAACTGGTGAGGGAAGC 1857
||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 GAAATGAGCTTGTTGAAGAGAGTGAAGAGCTCTTACTTGTTGGAAACTGGTGAGGGAAGC 1833
Query 1858 AGACAACAACATCCCACGTTCCAAGATGTATGGAATTCGTCTTCTTATTCTAATTCCTTC 1917
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1834 AGACAACAACATCCCACGTTCCAAGATGTATGGAACTCGTCTTCTTATTCTAATTCCTTC 1893
Query 1918 CAAACTTATGATTCTATTCTTCATGGAAGGTGA 1950
||| ||||||||||||||||||||||||||||
Sbjct 1894 GAAAGTTATGATTCTATTCTTCATGGAAGGTGA 1926
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73285631380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5