BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28365.1
Length=919
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945198 jgi|Araly1|945198|scaffold_701427.1 966 0.0
> Ahg945198 jgi|Araly1|945198|scaffold_701427.1
Length=691
Score = 966 bits (523), Expect = 0.0
Identities = 640/692 (92%), Gaps = 25/692 (4%)
Strand=Plus/Plus
Query 133 ATTAACGTTTTGCATCGGAGATGGGTTTGGTCATGAGGTTTGATCTTTACCTTATGTTTG 192
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATTAACGTTTTGGATCGGAGATGGATTTGGTCATGAGGTTTGATCTTTACCTTATGTTTG 60
Query 193 TGATGTTGATGGGTTTAGGGTTTACGATATCAAATGGATACAAGTTCTATGTTGGTGGGA 252
|||||||||||||| | ||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 61 TGATGTTGATGGGTATGGGGTTTAAGATATCAAATGGATACAAATTCTATGTTGGTGGGA 120
Query 253 AAGATGGTTGGGTCCCGACTCCTTCCGAAGATTATTCTCATTGGTCTCACCGAAACCGGT 312
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 121 AAGATGGTTGGGTCCCTACTCCTTCCGAAGATTATTCTCATTGGTCTCACCGGAACCGGT 180
Query 313 TTCAAGTCAACGACACTCTTCATTTTAAGTACGCCAAGGGAAAAGATTCAGTGTTGGAGG 372
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 181 TTCAAGTCAACGACACTCTTCATTTTAAGTACGCGAAGGGAAAAGATTCAGTGTTGGAGG 240
Query 373 TGACTGAACAAGAGTACAACACATGCAACACGACACACCCCCTGACTTCCCTCTCAGACG 432
||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 241 TGAGTGAACAAGAGTACAACACATGCAACACGACCCACCCCCTGACTTCCCTCTCAGACG 300
Query 433 GAGACTCTCTCTTCCTACTTAGCCACTCAGGTTCCTACTTTTTCATTAGTGGCAACTCTC 492
||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 301 GAGACTCTCTCTTTCTACTTAGCCACTCCGGTTCCTTCTTTTTCATTAGTGGCAACTCTC 360
Query 493 AAAACTGTCTTAAAGGTCAGAAGCTAGCCGTCAAGGTCTTGTCCACCGTCCACCACAGCC 552
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 361 AAAACTGTCTTAAAGGTCAGAAGCTAGCCGTCAAGGTCTTGTCTACCGTCCACCACAGCC 420
Query 553 ACTCTCCTCGTCATACCTCTCCCTCC-C--C---GTC----TC-C-G-----G-TCCATC 594
|||||||||||||||||||||||||| | | ||| || | | | ||||||
Sbjct 421 ACTCTCCTCGTCATACCTCTCCCTCCTCGTCTCCGTCACCGTCACTGTCTCCGGTCCATC 480
Query 595 AGGAGTTGTCTTCGCCGGGGCCTTCTCCAGGAGTGGAACCATCATCTG-ATTCAAACTCT 653
|||| ||||||||||||| ||||||||||||||||||||||||||||| || ||||| ||
Sbjct 481 AGGATTTGTCTTCGCCGGTGCCTTCTCCAGGAGTGGAACCATCATCTGTAT-CAAACGCT 539
Query 654 CGTGTTCCAGCTCCAGGACCGGCTACAGCTCCCAATTCGGCCGGTTTGGTTGGTCCGGGG 713
| || |||| ||||||| |||||| |||||| ||||||||||||||||||||||||||||
Sbjct 540 CATGCTCCAACTCCAGGGCCGGCTTCAGCTCGCAATTCGGCCGGTTTGGTTGGTCCGGGG 599
Query 714 ATGGTGGTTCTTGTGATTATGATAAGTTCTCTGTTT--T--GAGGGGTTTATATATTGTC 769
|||| ||||||||||||||||||||||||| ||||| | |||||||||||||||||||
Sbjct 600 ATGGGGGTTCTTGTGATTATGATAAGTTCTATGTTTAATTTGAGGGGTTTATATATTGTC 659
Query 770 GCTAGTCATTAAATTTGTGAGG-GTATTAATT 800
|||||||||||||||||||||| ||||| |||
Sbjct 660 GCTAGTCATTAAATTTGTGAGGTGTATTGATT 691
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34081887798
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5