BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28390.1
Length=1444
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1 2119 0.0
> Ahg491934 jgi|Araly1|491934|fgenesh2_kg.7__1367__AT4G28390.1
Length=1389
Score = 2119 bits (1147), Expect = 0.0
Identities = 1286/1351 (95%), Gaps = 17/1351 (1%)
Strand=Plus/Plus
Query 1 ATGTAGAAACCTACTCTTCTCGCAATTT-TCCACAGctctctctctctctctcGTTAACG 59
|||||||| |||||||||||||| |||| |||| || |||||||| | |||| ||||
Sbjct 1 ATGTAGAACCCTACTCTTCTCGC-ATTTGTCCAGAG----CTCTCTCT-T-TCGTAAACG 53
Query 60 CTTCGGCGAAAAATCCACGAGTCAGCTTTTACTGA-TTTGTAC-A-AAAAATGGATGGAT 116
|| |||||||||||| |||| |||||||||||||| ||| ||| | ||||||||||||||
Sbjct 54 CTCCGGCGAAAAATCTACGAATCAGCTTTTACTGAGTTT-TACTACAAAAATGGATGGAT 112
Query 117 CAAAGCATCCATCAGTCTTTCAGAAGCTACATGGACAATCTTACTTGATCAATAGACTTT 176
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 113 CAAAGCATCCATCAGTGTTTCAGAAGCTACATGGACAATCTTACTTGATTAATAGACTTT 172
Query 177 CTCCGAGTGTGCAAGCTCGTGGTTACTGTGTCTCTGGTGCTTATGTCAATGGAGGTTTGC 236
|||||| || |||| |||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 173 CTCCGATTGAGCAAACTCGTGATTACGGTGTCTCTGGTGCTTATGTCAATGGAGGTTTGC 232
Query 237 AGAGTCTATTGCAGCCAACTAGCCATGGCGTTGGCTCGTCTCTTATA-C-C-TCATGGTT 293
|||||||||| ||| |||||||||||||| ||||||| ||||||||| | | ||||||||
Sbjct 233 AGAGTCTATTTCAGTCAACTAGCCATGGCATTGGCTCTTCTCTTATACCGCATCATGGTT 292
Query 294 CATTTCCTGTATTAGCTCACGCTCCTAGTGAGAAAACTGGTACTGGTTTCTTGATCGATT 353
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 293 CATTTCCTGTATTAGCTCAAGCTCCTAGTGAGAAAACTGGGACTGGTTTCTTGATCGATT 352
Query 354 TCCTTATGGGAGGAGTCTCAGCTGCTGTTTCGAAGACGGCAGCCGCGCCTATAGAGCGTG 413
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 353 TCCTTATGGGAGGAGTCTCAGCTGCTGTTTCGAAGACGGCAGCAGCGCCGATAGAGCGTG 412
Query 414 TGAAGCTCTTGATTCAGAATCAAGATGAAATGATCAAAGCTGGGCGTCTCTCTGAGCCAT 473
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 413 TTAAGCTCTTGATTCAGAATCAAGATGAAATGATCAAAGCTGGGCGTCTCTCTGAGCCAT 472
Query 474 ATAAAGGAATCAGTGATTGTTTT-GCTCGAACAGTCAAAGACGAAGGAATGCTTGCTCTT 532
| ||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||
Sbjct 473 ACAAAGGAATCAGTGATTGTTTTGGC-CGAACAGTCAAAGACGAAGGAATGATTGCTCTT 531
Query 533 TGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTTAAACTTTGCG 592
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 TGGAGAGGAAACACTGCCAATGTTATCAGATACTTCCCCACTCAGGCTTTAAACTTTGCT 591
Query 593 TTCAAAGATTACTTCAAGAGGCTGTTTAACTTCAAGAAAGAAAAAGATGGCTACTGGAAG 652
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTCAAAGATTACTTTAAGAGGCTGTTTAACTTCAAGAAAGAAAAAGATGGCTACTGGAAG 651
Query 653 TGGTTTGCAGGGAACCTGGCGTCTGGTGGTGCAGCTGGTGCATCATCTCTGCTTTTTGTG 712
|||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 652 TGGTTTGCTGGGAACCTGGCGTCTGGTGGTGCAGCTGGTGCATCGTCTCTGCTTTTTGTG 711
Query 713 TACTCTTTGGATTACGCTCGTACCCGTTTAGCCAATGATGCGAAGGCGGCCAAGAAAGGT 772
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 712 TACTCTTTGGATTACGCTCGTACCCGTTTGGCCAATGATGCGAAGGCGGCCAAGAAAGGT 771
Query 773 GGTCAGCGGCAGTTTAATGGCATGGTCGACGTGTACAAGAAGACTATAGCCTCTGATGGC 832
|||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 772 GGTCAGAGGCAGTTTAATGGCATGGTCGACGTGTACAAGAAGACCATAGCCTCTGATGGC 831
Query 833 ATTGTCGGGCTTTACCGTGGTTTCAACATCTCATGCGTTGGAATTGTCGTGTACCGGGGG 892
||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||
Sbjct 832 ATTGTCGGGCTTTACCGTGGTTTCAACATCTCATGTGTTGGAATTGTCGTGTATCGTGGG 891
Query 893 CTTTACTTTGGATTGTATGATTCCTTGAAGCCTGTGGTTCTAGTTGATGGTCTCCAGGAT 952
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 892 CTTTACTTTGGATTGTATGATTCCTTGAAGCCTGTGGTTTTAGTTGATGGTCTCCAGGAT 951
Query 953 AGCTTCCTTGCTAGTTTCTTACTGGGATGGGGAATCACCATTGGAGCTGGATTGGCGTCT 1012
||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 952 AGCTTCCTTGCGAGTTTCTTACTGGGATGGGGAATCACCATTGGAGCTGGACTGGCGTCT 1011
Query 1013 TACCCAATTGACACGGTTCGCAGAAGAATGATGATGACGTCAGGTGAAGCAGTGAAGTAC 1072
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 1012 TACCCAATTGACACGGTGCGCAGAAGAATGATGATGACATCAGGTGAAGCAGTGAAGTAC 1071
Query 1073 AAGAGCTCTCTTCAGGCCTTCTCTCAGATCGTCAAGAACGAAGGGGCCAAGTCACTCTTC 1132
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1072 AAGAGCTCTCTTCAGGCCTTCTCTCAGATCGTCAAGAAAGAAGGGGCCAAGTCACTCTTC 1131
Query 1133 AAGGGTGCAGGTGCCAACATCCTTCGTGCGGTTGCAGGCGCTGGTGTACTGGCCGGCTAT 1192
||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 1132 AAGGGTGCAGGTGCCAACATCCTCCGTGCCGTTGCAGGCGCTGGTGTACTCGCCGGCTAT 1191
Query 1193 GACAAGCTCCAGCTCATTGTGTTGGGTAAGAAGTATGGCTCTGGTGGTGGCTAAACGATG 1252
||||| || ||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1192 GACAAACTTCAGCTCATTGTGTTGGGCAAGAAGTATGGCTCTGGTGGTGGCTAAACTATG 1251
Query 1253 AGGATGATGAAAGAATAGCCCTTGAGGTCTGTGAATGAATAAAGCAGTGTGTCCGTTCGT 1312
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 AGGATGATGAAAGAATAGCCCTTGAGGTCTGTGAATGAATAAAGCAGTGTGTCCGTTCGT 1311
Query 1313 ATAAATGTTGCTTTTAGAATATAGAGTGTCT 1343
|||||||||||||||||||||| ||||||||
Sbjct 1312 ATAAATGTTGCTTTTAGAATATTGAGTGTCT 1342
Score = 73.1 bits (39), Expect = 5e-12
Identities = 50/55 (91%), Gaps = 2/55 (4%)
Strand=Plus/Plus
Query 1369 AGT-TCTATACTTCTATGACTTTTGTTGACAAAAGAATAAATACAAAGAAAACCA 1422
||| ||| || ||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 1336 AGTGTCT-TAGTTCTATGACGTTTCTTGACAAAAGAATAAATACAAAGAAAACCA 1389
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54011967410
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5