BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28395.1

Length=768
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328856 jgi|Araly1|328856|fgenesh1_pm.C_scaffold_7001083           601    3e-171


> Ahg328856 jgi|Araly1|328856|fgenesh1_pm.C_scaffold_7001083
Length=426

 Score =  601 bits (325),  Expect = 3e-171
 Identities = 394/427 (92%), Gaps = 5/427 (1%)
 Strand=Plus/Plus

Query  172  ATGAAGATACA---TGCCATATTGGTAGTAG-CGTTCTTGGTCCTGATGAAGACCGCCGT  227
            |||| ||||||   ||| |||||||| || | ||||||| ||| ||||||||||||| ||
Sbjct  1    ATGAGGATACATCGTGCTATATTGGTCGT-GACGTTCTTTGTCATGATGAAGACCGCAGT  59

Query  228  TTCCCAGGACAATAATCCGCTGGAACATTGCAGAGACGTGTTCGTGAGTTTCATGCCCTG  287
            ||||||||||||| | ||| |||  || ||||| ||||||||||||||||||||||| ||
Sbjct  60   TTCCCAGGACAATGACCCGATGGCTCACTGCAGGGACGTGTTCGTGAGTTTCATGCCGTG  119

Query  288  CATGGGCTTCGTCGAGGGAATATTTCAACAACCTTCTCCAGATTGCTGCAGAGGCGTGAC  347
            |||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct  120  CATGGGTTTCGTCGAGGGAATATTCCAACAACCTTCGCCAGATTGCTGCAGAGGCGTGAC  179

Query  348  CCACTTGAACAACGTCGTCAAGTTTACGTCTCCAGGATCGAGGAATAGGCAGGATAGTGG  407
            ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | |||
Sbjct  180  CCACTTGAACAACATCGTCAAGTTCACGTCTCCAGGATCGAGGAATAGGCAGGACACTGG  239

Query  408  AGAAACAGAGAGAGTGTGTCTGTGCATTGAGATAATGGGAAATGCAAATCATCTTCCTTT  467
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  240  AGAAACAGAGAGAGTGTGTCTGTGCATAGAGATAATGGGAAATGCAAATCATCTTCCTTT  299

Query  468  TCTTCCCGCCGCTATTAATAACCTTCCTCTCCGTTGTTCTCTTACTCTCAGCTTTCCCAT  527
            ||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  300  TCTTCCCGCTGCCATTAATAACCTTCCTCGCCGTTGTTCTCTTACTCTCAGCTTTCCCAT  359

Query  528  CTCCGTTGATATGGACTGTTCTCAGTTCAGAAACACCAAGAATCCCGACGTTGAGAAATT  587
            |||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct  360  CTCCGTTGCTATGGACTGTTCTCAGCTCAGAAACACCAAGAATCCCGACGTTGAAAAATT  419

Query  588  AAATTAA  594
            |||||||
Sbjct  420  AAATTAA  426



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 28325327331


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5