BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28395.1 Length=768 Score E Sequences producing significant alignments: (Bits) Value Ahg328856 jgi|Araly1|328856|fgenesh1_pm.C_scaffold_7001083 601 3e-171 > Ahg328856 jgi|Araly1|328856|fgenesh1_pm.C_scaffold_7001083 Length=426 Score = 601 bits (325), Expect = 3e-171 Identities = 394/427 (92%), Gaps = 5/427 (1%) Strand=Plus/Plus Query 172 ATGAAGATACA---TGCCATATTGGTAGTAG-CGTTCTTGGTCCTGATGAAGACCGCCGT 227 |||| |||||| ||| |||||||| || | ||||||| ||| ||||||||||||| || Sbjct 1 ATGAGGATACATCGTGCTATATTGGTCGT-GACGTTCTTTGTCATGATGAAGACCGCAGT 59 Query 228 TTCCCAGGACAATAATCCGCTGGAACATTGCAGAGACGTGTTCGTGAGTTTCATGCCCTG 287 ||||||||||||| | ||| ||| || ||||| ||||||||||||||||||||||| || Sbjct 60 TTCCCAGGACAATGACCCGATGGCTCACTGCAGGGACGTGTTCGTGAGTTTCATGCCGTG 119 Query 288 CATGGGCTTCGTCGAGGGAATATTTCAACAACCTTCTCCAGATTGCTGCAGAGGCGTGAC 347 |||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| Sbjct 120 CATGGGTTTCGTCGAGGGAATATTCCAACAACCTTCGCCAGATTGCTGCAGAGGCGTGAC 179 Query 348 CCACTTGAACAACGTCGTCAAGTTTACGTCTCCAGGATCGAGGAATAGGCAGGATAGTGG 407 ||||||||||||| |||||||||| ||||||||||||||||||||||||||||| | ||| Sbjct 180 CCACTTGAACAACATCGTCAAGTTCACGTCTCCAGGATCGAGGAATAGGCAGGACACTGG 239 Query 408 AGAAACAGAGAGAGTGTGTCTGTGCATTGAGATAATGGGAAATGCAAATCATCTTCCTTT 467 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 240 AGAAACAGAGAGAGTGTGTCTGTGCATAGAGATAATGGGAAATGCAAATCATCTTCCTTT 299 Query 468 TCTTCCCGCCGCTATTAATAACCTTCCTCTCCGTTGTTCTCTTACTCTCAGCTTTCCCAT 527 ||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 300 TCTTCCCGCTGCCATTAATAACCTTCCTCGCCGTTGTTCTCTTACTCTCAGCTTTCCCAT 359 Query 528 CTCCGTTGATATGGACTGTTCTCAGTTCAGAAACACCAAGAATCCCGACGTTGAGAAATT 587 |||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||| Sbjct 360 CTCCGTTGCTATGGACTGTTCTCAGCTCAGAAACACCAAGAATCCCGACGTTGAAAAATT 419 Query 588 AAATTAA 594 ||||||| Sbjct 420 AAATTAA 426 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28325327331 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5