BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28397.1

Length=659
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889298 jgi|Araly1|889298|Al_scaffold_0007_1284                    521    2e-147


> Ahg889298 jgi|Araly1|889298|Al_scaffold_0007_1284
Length=336

 Score =  521 bits (282),  Expect = 2e-147
 Identities = 320/338 (95%), Gaps = 4/338 (1%)
 Strand=Plus/Plus

Query  85   ATGCATCGTGCTCTATTGCTTATGACACTGATCACGTCCGCGGTTTCCATGAGTGAAGAA  144
            |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  1    ATGCATCGCGCTCTATTGCTTATGACACTAATCACGTCCGCGGTTTCCATGAGTGAAGAA  60

Query  145  GAGCATTGCAGGGACATGTTCGAGAGCTTTATTAAAGGACTATCTATGCAACCCCCTCCA  204
            ||||||||||||||||||||||||||||||||||||||| ||||| || ||||  |||||
Sbjct  61   GAGCATTGCAGGGACATGTTCGAGAGCTTTATTAAAGGAATATCTCTGGAACCTTCTCCA  120

Query  205  CAGTATTGTAGAGGAGTGAGCCGCTTCAATAACGTCCTCAAGCTCACGTCTCCAATTACT  264
            |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  121  CAGTATTGTAGAGGAGTGAGCCGCTTTAATAACGTCCTCAAGCTCACGTCTCCAATTACT  180

Query  265  TTGCAGGTATTGACGAAGAAAAAG-GTGAATGGGAA-GATAGGGGGACGGTGTGATTGCC  322
            ||||||| |||||||||||||||| | ||| ||||| |||||||||||||||||||||||
Sbjct  181  TTGCAGGGATTGACGAAGAAAAAGAG-GAA-GGGAAAGATAGGGGGACGGTGTGATTGCC  238

Query  323  CGGAATTAGATATAATTTGGAAAATAAGATGTAAACCTTGCGCACAAAACCCAGACCCGA  382
            ||||||||||| |||||||||||||||||||||||||||||||||| | ||||||| |||
Sbjct  239  CGGAATTAGATGTAATTTGGAAAATAAGATGTAAACCTTGCGCACACAGCCCAGACTCGA  298

Query  383  ATGTAACAGAATCTGAATCACAACATGTGTTGATGTGA  420
            |||| |||||||||||||||||||||||||||||||||
Sbjct  299  ATGTCACAGAATCTGAATCACAACATGTGTTGATGTGA  336



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24169929378


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5