BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28400.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491931 jgi|Araly1|491931|fgenesh2_kg.7__1364__AT4G28400.1 1476 0.0
> Ahg491931 jgi|Araly1|491931|fgenesh2_kg.7__1364__AT4G28400.1
Length=1177
Score = 1476 bits (799), Expect = 0.0
Identities = 986/1070 (92%), Gaps = 38/1070 (4%)
Strand=Plus/Plus
Query 170 CACAGAGACAGAGGAATAGTCTCAAAAC--TTTCTCAGAAATGGCAGGCAGTAATATTCT 227
||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||
Sbjct 131 CACAGAGACAGAGGAATCGTCTCAAAGCTTTTTCTCAGAAATGGCAGGCAGTAATATTCT 190
Query 228 CCATAAGATTAAGTTGAAGGCTGGGTTCTGTGGATCTGCTCCTGACATGGGAAGAGGCAA 287
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 191 CCATAAGATTAAGTTAAAGGCTGGGTTCTGTGGATCCGCTCCTGACATGGGAAGAGGCAA 250
Query 288 AAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTGTGAAGGGCAAGTCCAGCCA 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 AAGCAAGATGTGGAAGAACATCACCCACGGTTTTCACTGTGTGAAGGGCAAGTCCAGCCA 310
Query 348 TCCGATGGAGGACTATGTAGTGTCTGAATTCAAGAAACTTGAAGGTCATGAATTGGGTTT 407
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 311 TCCGATGGAGGATTATGTAGTGTCTGAATTCAAGAAACTTGAAGGGCATGAATTGGGTTT 370
Query 408 GTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCTAAATACTTGCAGACTAATCT 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 371 GTTTGCTATCTTTGATGGTCACTTGGGGCATGATGTGGCTAAATACTTGCAGACTAATCT 430
Query 468 CTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGACACAGAGAATGCTATAAGGAA 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 431 CTTTGACAACATTCTTAAAGAGAAGGATTTTTGGACTGACACAGAGAATGCTATAAGGAA 490
Query 528 TGCCTACAGATCAACAGATGCCGTGATATTGCAGCAGTCCCTTAAGCTTGGTAAAGGCGG 587
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 491 TGCGTACAGATCAACAGATGCTGTGATATTGCAGCAGTCCCTTAAGCTTGGTAAAGGCGG 550
Query 588 ATCAACAGCTGTAACGGGAATTCTAATTGATGGTAAAAAGCTAGTTGTTGCTAATGTTGG 647
|||||| |||||||| |||||| | ||||||||| |||||||||||||||||||||||||
Sbjct 551 ATCAACCGCTGTAACCGGAATTTTGATTGATGGTCAAAAGCTAGTTGTTGCTAATGTTGG 610
Query 648 AGACTCCAGAGCAGTGATGTCTAAGAATGGTGTTGCGCATCAGCTATCTGTCGATCATGA 707
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 611 AGACTCCAGAGCAGTGATGTCTAAGAATGGTGTTGCGCATCAGCTCTCAGTCGATCATGA 670
Query 708 ACCAAGCAAGGAGAAAAAAGAAATAGAGAGCCGAGGTGGCTTTGTGTCAAATATTCCAGG 767
|||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 671 ACCAAGCAAGGAGAAAAAAGAAATAGAGAGCCGAGGCGGCTTTGTATCCAATATTCCAGG 730
Query 768 GGATGTTCCACGAGTGGATGGACAGTTAGCGGTTGCAAGAGCATTTGGAGATAAGAGCTT 827
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GGATGTTCCACGAGTTGATGGACAGTTAGCGGTTGCAAGAGCATTTGGAGATAAGAGCTT 790
Query 828 AAAGTTACATCTGAGCTCAGAACCGGACATAACACACCAGACAATTGATGATCACACTGA 887
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 791 AAAGATACATCTGAGCTCAGAACCGGACATAACACACCAGACAATTGATGATCACACTGA 850
Query 888 ATTCATCCTTTTCGCAAGCGATGGTATTTGGAAAGTATT-A-T--CAA-ACCAAGAAG-C 941
|||||||||||| || ||||||||||||||||| | | | | | |||| |
Sbjct 851 ATTCATCCTTTTTGCCAGCGATGGTATTTGGAAGGCAACCAGTTTCTGGACCACTTCTTC 910
Query 942 GGT--TGATGCTATCAAGAGTATCAAAGATCCTCATGCAGCTGCAAAGCACTTGATAGAG 999
||||| | |||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 911 TAACATGATGGT--CAAGAGTATCAAAGATCCGCATGCAGCTGCAAAGCACTTGATAGAG 968
Query 1000 GAAGCTATATCTAGGAAGAGCAAAGATGACATCTCATGTATCGTTGTAAAGTTCCACTAA 1059
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 969 GAAGCTATATCTAGGAAGAGCAAAGACGACATCTCCTGTATCGTTGTAAAGTTCCACTAA 1028
Query 1060 TCTTCTCTTCTTCTTATCAAAAGCTATTTTGTCTATAAGTTACCATCAAGTT-GCAAGAT 1118
|||| | || | || || || | || | ||| | | | | ||| |||||||
Sbjct 1029 TCTT-T-TTGT-CT-AT-AA--GTTAC-----C-ATA--T--C-A--A-GTTTGCAAGAT 1067
Query 1119 AGAGAAATATATGCTCAAGCTGTGTCTGTAAAAACCCAGTAATGAGGTTTCCCAGAAGAT 1178
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1068 AGAGAAATATATGCTCAAGCTGTGTCTGTAAAA-CCCAGTAATGAGGTTTCCCAGAAGAT 1126
Query 1179 GTAATATATTATC---GAAATCGCAACAGCCTTAAGATACaaaagaaaga 1225
|||||||||||| |||||||| ||||||||||||||||||| |||||
Sbjct 1127 GTAATATATTATGTTAGAAATCGCGACAGCCTTAAGATACAAAACAAAGA 1176
Score = 89.8 bits (48), Expect = 5e-17
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 1 GAACGCGTCCGCATTGGAGGACGCAGCCGATAAAATGTTACAGTCACCGAGCATTTCACA 60
|||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 GAACGCGTTGGCAAAGGAGGACGCAGCCGATAAAATGTTACAGTCACCGAGCAGTTCACA 60
Query 61 TTA 63
|||
Sbjct 61 TTA 63
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5