BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28420.2
Length=1559
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491928 jgi|Araly1|491928|fgenesh2_kg.7__1361__AT4G28420.2 2170 0.0
> Ahg491928 jgi|Araly1|491928|fgenesh2_kg.7__1361__AT4G28420.2
Length=1391
Score = 2170 bits (1175), Expect = 0.0
Identities = 1321/1393 (95%), Gaps = 4/1393 (0%)
Strand=Plus/Plus
Query 4 TACTCCCAACGAATATATTCACAATGAACCACAACAGCAACCTCGTTCTTCCTTCCCATC 63
|||||||| | ||| |||| ||||||||||||||||||||||||||||||||| || |||
Sbjct 1 TACTCCCAGCAAATTTATTAACAATGAACCACAACAGCAACCTCGTTCTTCCTGCCTATC 60
Query 64 AAACCGAGACGCAGACGCAAGATGAAACCGATATCAGCGTTTGGCGTTTCAGGGGAAGCG 123
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 61 AAACCGAGACGCAGACGCAAAATGAGACCGATATCAGCGTTTGGCGTTTCAGGGGAAGCG 120
Query 124 ACAAC-GCAGCCAAAGCCTCCAGCGTCACGATGAGAGTCATCGTCTACAAGCTCTTCGAT 182
|| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 121 AC-ACGGCAGCTAAAGCCTCCAGCGTCACTATGAGAGTCATCGTCTACAAGCTCTTCGAT 179
Query 183 GAATGCAGCCTGGATGTGAAAAAGCCTCTTTTACCCCTTGCTCACGGTGACCCTTCTGTC 242
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 GAATGCAGCCTGGATGTGAAAAAGCCTCTTTTACCCCTTGCTCACGGTGACCCTTCTGTG 239
Query 243 TACCCTTGTTACCGCACCTCCATCCTCGTCGAGAACGCCGTGGTCGACGTCCTTCGCTCC 302
|||||||| ||||||||||| ||||| |||||||||||||| ||||||||| | ||||||
Sbjct 240 TACCCTTGCTACCGCACCTCTATCCTGGTCGAGAACGCCGTCGTCGACGTCATCCGCTCC 299
Query 303 GGCAAGGGTAACTCTTACGGCCCCGCCGCCGGAATTCTCCCAGCCAGACAGGCGGTCGCA 362
|||||||| |||||||| ||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 300 GGCAAGGGCAACTCTTATGGCCCCGCCGCCGGAATCCTCCCTGCCAGACAGGCGGTTGCT 359
Query 363 GATTACGTGAACCGAGACTTGACGAACAAGGTAAAGCCTAATGATGTATTCATAACTGTC 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GATTACGTGAACCGAGACTTGACGAACAAGGTAAAGCCTAATGATGTATTCATAACTGTC 419
Query 423 GGATGCAACCAAGGGATAGAAGTAGTTCTTCAGTCACTGGCTCGACCAAACGCTAACATC 482
||||||||||||||||||||||| || ||||| || |||||||| |||||||||||||||
Sbjct 420 GGATGCAACCAAGGGATAGAAGTCGTGCTTCAATCGCTGGCTCGGCCAAACGCTAACATC 479
Query 483 CTTCTCCCAAGGCCTAGTTACCCTCACTACGAGGCTCGTGCCGTCTACAGTGGACTCGAG 542
||||||||| |||||||||| |||||||||||||||||||||||||||||||| |||| |
Sbjct 480 CTTCTCCCACGGCCTAGTTATCCTCACTACGAGGCTCGTGCCGTCTACAGTGGGCTCGGG 539
Query 543 GTCCGCAAGTTCGATCTCCTTCCAGAGAAAGAATGGGAGATTGATCTCCCAGGCATCGAA 602
||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 540 GTCCGCAAGTTTGATCTCCTTCCGGAGAAAGAATGGGAGATTGATCTCCCAGGTATCGAA 599
Query 603 GCCATGGCAGATGAGAACACAGTTGCAATGGTTATCATAAACCCTAACAACCCCTGTGGA 662
||||||||||| |||||||| || || |||||||||||||||||||||||||||||||||
Sbjct 600 GCCATGGCAGACGAGAACACTGTCGCGATGGTTATCATAAACCCTAACAACCCCTGTGGA 659
Query 663 AATGTTTACTCTTACGATCATCTTAAGAAGGTGGCGGAGACGGCTAAGAAGCTGGGAATA 722
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 660 AATGTTTACTCTTACGATCATCTTAAGAAGGTGGCGGAGACGGCTAAGAAGCTTGGAATA 719
Query 723 ATGGTAATCACAGACGAAGTTTATTGCCAAACAATCTTCGGAGACAAACCTTTTGTCCCA 782
||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 720 ATGGTGATCACAGACGAAGTTTATTGCCAGACAATCTTCGGAGACAACCCTTTTGTTCCA 779
Query 783 ATGGGGGAGTTTTCTTCGATAACTCCGGTTATCACTTTGGGCGGTATATCGAAAGGATGG 842
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 780 ATGGGGGAGTTTTCTTCGATAGCTCCGGTTATCACTTTGGGCGGTATATCGAAAGGATGG 839
Query 843 ATTGTTCCTGGTTGGAGAATTGGCTGGATCGCTTTGAATGACCCCAGAGGAATTCTCAAG 902
|||||||||||||||||||||||||||| || |||||||||||| | ||||||| ||||
Sbjct 840 ATTGTTCCTGGTTGGAGAATTGGCTGGACCGTTTTGAATGACCCTAAAGGAATTTTCAAA 899
Query 903 TCCACAGGGATGGTACAGTCCATTCAACAGAACCTTGACATAACTCCAGATGCTACAACT 962
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 900 TCCACAGGGATGGTACAGTCCATCCAACAGAATCTTGACATAACTCCAGATGCTACAACT 959
Query 963 ATTGTTCAAGCTGCACTTCCTGAGATTTTAGGGAAAGCGAATAAAGAGTTGTTTGCCAAG 1022
|||||||| |||||||||||||||||| |||||||||||||||||||| ||||||| |||
Sbjct 960 ATTGTTCAGGCTGCACTTCCTGAGATTCTAGGGAAAGCGAATAAAGAGATGTTTGCGAAG 1019
Query 1023 AAGAATTCGATGCTGAAACAAAACGTGGAATTGGTCTGTGATAGGCTCAAGGAGATTCCT 1082
||||||||||| ||||||| |||||||||||||| || |||||||| ||||| ||||||
Sbjct 1020 AAGAATTCGATATTGAAACAGAACGTGGAATTGGTTTGCGATAGGCTTAAGGACATTCCT 1079
Query 1083 TGCTTGGTCTGCAACAAGAAACCTGAGTCATGCACTTACTTATTGACGAAGCTGAAGCTT 1142
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1080 TGCTTGGTCTGCAACAAGAAACCTGAGTCATGCACTTACTTATTGACGAAACTGAAGCTT 1139
Query 1143 CCATTGTTGGAGGACATAGAAGACGACATGGATTTCTGTATGAAGCTAGCCAAAGAAGAA 1202
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 CCATTGTTGGAGGACATAGAAGACGACATGGATTTCTGTATGAAGCTAGCCAAAGAAGAA 1199
Query 1203 AACCTCGT-CTTACTACCAGGAGTGGCTTTGGGATTGAAGAACTGGATAAGGATAACAAT 1261
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1200 AACCTCGTCCTT-CTACCAGGAGTGGCTTTGGGATTGAAGAACTGGATAAGGATAACAAT 1258
Query 1262 TGGAGTAGAAGCTCAGATGCTGGAAGATGCACTTGAGAGGCTCAATGGCTTCTGCAAACG 1321
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1259 TGGAGTAGAAGCTCAGATGCTGGAAGATGCACTTGAGAGGCTCAACGGTTTCTGCAAACG 1318
Query 1322 CCATCTCAAGAAAACAGAATCTTCTTTTCAAGCTCTGAGCAATGGCAAAATCTAAACCAC 1381
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1319 CCATCTCAAGAAAACAGAGTCTTCTTTTCAAGCTCTGAGCAATGGCAAAATCTAAACCAC 1378
Query 1382 TCATCTATAGAGA 1394
|||||||||||||
Sbjct 1379 TCATCTATAGAGA 1391
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58392345585
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5