BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28430.1
Length=1520
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491927 jgi|Araly1|491927|fgenesh2_kg.7__1360__AT4G28430.1 1838 0.0
> Ahg491927 jgi|Araly1|491927|fgenesh2_kg.7__1360__AT4G28430.1
Length=1469
Score = 1838 bits (995), Expect = 0.0
Identities = 1321/1469 (90%), Gaps = 60/1469 (4%)
Strand=Plus/Plus
Query 59 ACT-CTACTACCACACCTCCTTCTCTCCGTTCGAATACTAGATCCGCTTTGCGTCTAGCT 117
||| ||||||| || ||||| |||||||||||||| ||| |||||| |||||||| ||
Sbjct 24 ACTACTACTACTACGCCTCCATCTCTCCGTTCGAACCCTAAATCCGCGTTGCGTCTCTCT 83
Query 118 CGAAACAACAAAACTCTCGTAAAATCTCACATTCCATCTCTCGATTTGGTTTTATTGTCT 177
||||||||||| |||||||| |||||||||||||||||||||||||||||| ||| ||||
Sbjct 84 CGAAACAACAACACTCTCGTCAAATCTCACATTCCATCTCTCGATTTGGTTCTATCGTCT 143
Query 178 CCGAAGAACAACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAGTTCACCATCTTCT 237
|||||| ||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 144 CCGAAG---AACAACGGTACTCCTTACCCATCACCTGTTTCTCTCAATTCTCCATCTTCT 200
Query 238 CCTGTTACTCTTCGTGAGATTCTCCTTTTATCTCCTTCCCCTCTTCGTAAATCGAGAACC 297
||||||||||||||||| || || |||||||||||||| |||||||||||||||||||||
Sbjct 201 CCTGTTACTCTTCGTGAAATCCTTCTTTTATCTCCTTCTCCTCTTCGTAAATCGAGAACC 260
Query 298 CGTTTAAGCAATCGGTTCGATATGGAAGCTGCGGAGGCTGCTGTGACGGCACGACGGAGT 357
||||| || ||||||||||||||||||||||| |||||||||||| | ||||||||| ||
Sbjct 261 CGTTTGAGTAATCGGTTCGATATGGAAGCTGCCGAGGCTGCTGTGGCCGCACGACGGTGT 320
Query 358 AAGACGAAGGGAGGGCAAAATGGTC--TT---TTG-GCCTCGCCGTCGCCGAGGAATTTC 411
|||| ||| |||||||||||||||| || ||| ||||||||||||||||| ||||||
Sbjct 321 AAGAAGAAAGGAGGGCAAAATGGTCTTTTGACTTGTGCCTCGCCGTCGCCGAGAAATTTC 380
Query 412 CGGAGGTCGAGACTAAGGTCGGAGGCGATGGTAGATACAAAGGAAAATACGGAGCCAATT 471
|||||||||||||||||||| | || | |||||||||||||||||||||||||||
Sbjct 381 CGGAGGTCGAGACTAAGGTC----G-GA--G--GATACAAAGGAAAATACGGAGCCAATT 431
Query 472 GTTGTCGTGACCGATGAAAAGAAAC-AAAACCAGAGGAAACAGAAGAAG-TTGGGTCGAT 529
|||||| ||||||||||||| |||| |||||| |||||||||||||||| | |||||||
Sbjct 432 GTTGTCATGACCGATGAAAAAAAACAAAAACC-GAGGAAACAGAAGAAGACT-GGTCGAT 489
Query 530 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTAGCTTCTCCTAGTCCATCTTCAGATC 589
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 490 CTAAGAAGGAGAAGCACAGTTCTGTTCCTCTGTTACCTTCTCCTAGTCCATCTTCAGATC 549
Query 590 AACCTCAAGATGTTTGTCAAGGTGATTTAGAGCGGATTAGAGAGAATATAAGCGATTTGA 649
|| | |||||||||||||| ||||||||||||||||||||||||| || ||||||||||
Sbjct 550 AAAATGAAGATGTTTGTCAAAGTGATTTAGAGCGGATTAGAGAGAACATCAGCGATTTGA 609
Query 650 TTATGTGGAGAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGCTGTATATGTTTCC 709
||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 610 TTATGTGGAAAGATGTTGCGAAATCAACACTTTGGTTTGGTTTTGGATGTATATGTTTCC 669
Query 710 TATCTACTTGCTTTGCTGCTAAAGGATTTAACTTTAGTGTTTTCTCAGCGATCTCCTATC 769
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 670 TATCTTCTTGCTTTGCTGCTAAAGGATTTAACTTCAGTGTTTTCTCAGCGATCTCCTATC 729
Query 770 TTGGACTTTTGTTTCTTGGGGTATCGTTCTTGTCAAATACTCTTCGCCAAAGGGTTACTG 829
|||| || ||||||||||||||||||||||||||||| |||||||||||||||| || |
Sbjct 730 TTGGGCTCTTGTTTCTTGGGGTATCGTTCTTGTCAAACACTCTTCGCCAAAGGGCAACCG 789
Query 830 AAGAAGCGCGGAGAGAGCTTAAATTGAGTGAAGATGATGTATTACGAATAGCTAGACGAA 889
||||||| ||||||||||||||||||| |||||| ||||||||||| ||||||||||| |
Sbjct 790 AAGAAGCCCGGAGAGAGCTTAAATTGACTGAAGAGGATGTATTACGGATAGCTAGACGGA 849
Query 890 TGCTTCCCATCACCAATTTAGCAATTTCAAAGACGAGTGAGCTTTTCTCTGGTGAACCAG 949
|||||||||||||||||||||| || ||||||||||| |||||||||||||| |||||||
Sbjct 850 TGCTTCCCATCACCAATTTAGCGATATCAAAGACGAGCGAGCTTTTCTCTGGCGAACCAG 909
Query 950 CAATGACACTCAAAGTGGCACCTTTTGTTCTAATGGGAGCTGAGTATGGTTACCTCATAA 1009
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 910 CAATGACACTCAAAGTGGCACCCTTTGTTCTAATGGGAGCTGAGTATGGCTACCTCATAA 969
Query 1010 CATTGTGGAGATTATGTGCTTTTGGTTTCTTCCTTAGCTTCACTATTCCAAAGCTATATT 1069
|||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 970 CATTGTGGAGGTTATGTGCATTTGGTTTCTTCCTTAGCTTCACCATTCCAAAGCTATATT 1029
Query 1070 CATGTTACGCAAGTCAGCTTAACCAAAAAGTTGAGTGTGCACA-AAGGAGATTTGTTGAA 1128
||||||| ||||||||| |||||||||||||||| ||||||| ||| ||| ||||||||
Sbjct 1030 CATGTTATGCAAGTCAGATTAACCAAAAAGTTGAAAGTGCACAGAAG-AGAATTGTTGAA 1088
Query 1129 GCTTGGGGAGTTTGCACACACAAGAAATTCGTAGCAGGCTCTGCAGTTACTGCATTCTGG 1188
|||||||||||||||||||||||||| || || || ||||||||||||||||||||||||
Sbjct 1089 GCTTGGGGAGTTTGCACACACAAGAAGTTTGTGGCTGGCTCTGCAGTTACTGCATTCTGG 1148
Query 1189 AATCTAACTTCTCTCAAGACCCGTTTTATTGCAGTGTTTATCATAGTAGTAGTAATCAGA 1248
|| || ||||||||||||||||||||||| |||||||||||||| || ||||||||||||
Sbjct 1149 AACCTGACTTCTCTCAAGACCCGTTTTATCGCAGTGTTTATCATTGTGGTAGTAATCAGA 1208
Query 1249 TACAGACGACAGAATCTACAGTTAGATTCCGAGGATGAGGAGGAGAAGAAGCAACAAGAA 1308
|||||||| ||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1209 TACAGACGCCAGAATCTACAGTTAGATTCCGAGGATGAGGTGGAGAAG---CAACAAGAA 1265
Query 1309 AAAACTCACCCGGAGCAACAAAAATCGCCGGAGGATAAGTCA-----AC-TTCACC---- 1358
|||||||||||||||||||| ||||||||||||| |||||| || ||||||
Sbjct 1266 CAAACTCACCCGGAGCAACAAGAATCGCCGGAGGAAAAGTCACCTTCACCTTCACCATCA 1325
Query 1359 --GC-G--GTC---A--GCAG--A--AGAAGA-G--CAAGCGTTGGTGCTAGTTGCAGAA 1401
|| | | | | || | | |||||| | |||||||||||| | |||||||||
Sbjct 1326 CCGCCGCCGCCGCCACCGCGGTCAGCAGAAGAAGAGCAAGCGTTGGTGGTGGTTGCAGAA 1385
Query 1402 ACCAAAGCACCAAAGAAGCTTTATTAGTCTAGTCACTAGTGTCTTTTCAGTATCCACCTG 1461
||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct 1386 ACCGAAGCACCAAAGAAGCTTTA---GTCTAGTCACTAGTGTCTTTTCAGTTTCCACCTG 1442
Query 1462 TGTAATAATATTTCACATTTACGTAATAA 1490
| ||||| ||||||||||||||||||||
Sbjct 1443 T--AATAAAATTTCACATTTACGTAATAA 1469
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56906826030
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5