BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28440.1
Length=944
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945188 jgi|Araly1|945188|scaffold_701417.1 946 0.0
> Ahg945188 jgi|Araly1|945188|scaffold_701417.1
Length=598
Score = 946 bits (512), Expect = 0.0
Identities = 576/605 (95%), Gaps = 11/605 (2%)
Strand=Plus/Plus
Query 44 TCTGGGTATTGTAATTTGAAGCGATGGCGACGACTGGAACTGCTGCGGTTGCGACGGGAA 103
||||||| |||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 1 TCTGGGTTTTGTTATTTG-AGCGATGGCGACGTCTGGAACTGCTGCGGTTGCGACGGGAA 59
Query 104 CTTCGACGGTGAAGAGAAAACCGGTGTTTGTGAAGGTGGAACAGCTAAAGCCTGGAACGA 163
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 CGTCGACGGTGAAGAGAAAACCGGTGTTTGTGAAGGTGGAACAGCTAAAGCCTGGAACGA 119
Query 164 CTGGTCACACGTTGACTGTTAAAGTCATTGAGGCTAATATCGTGGTTCCTGTTACCCGGA 223
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 120 CTGGTCACACTTTGACTGTTAAGGTCATTGAGGCTAATATCGTGGTTCCTGTTACCCGGA 179
Query 224 AGACTCGTCCAG-CGAGTTCTCTGAGTCGTCCTTCTCAGCCTAGTCGAATCGTTGAGTGT 282
||||||| || | |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 180 AGACTCG-CCCGACGAGTTCTATGAGTCGTCCTTCTCAGCCTAGTCGAATCGTTGAGTGT 238
Query 283 CTCATCGGTGACGAAACTGGGTGTATCCTCTTCACTGCTCGTAACGATCAAGTTGATCTT 342
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 239 CTCATCGGAGATGAAACTGGGTGTATCCTCTTCACTGCTCGTAACGATCAAGTTGATCTT 298
Query 343 ATGAAGCC-GGGTGCTACGGTGATACTGCGCAATTCAAGGATAGACATGTTCAAGGGTAC 401
|||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATGAAGCCAGGG-GCAACGGTGATACTGCGCAATTCAAGGATAGACATGTTCAAGGGTAC 357
Query 402 AATGAGGCTAGGAGTTGATAAATGGGGACGCATCGAAGCCACTGGAGCC-GCGTCTTTCA 460
|||||||||||| |||||||||||||||||||||||||||||| || || |||||||||
Sbjct 358 AATGAGGCTAGGGGTTGATAAATGGGGACGCATCGAAGCCACT-GAACCTGCGTCTTTCG 416
Query 461 CTGTCAAGGAGGATAACAATCTGTCTCTCGTTGAGTATGAACTGATCAATGTTGGTGGTG 520
| |||||||||||||||||||||||||| |||||||||||||||||||||| | |||||
Sbjct 417 CAGTCAAGGAGGATAACAATCTGTCTCTTGTTGAGTATGAACTGATCAATG-T--TGGTG 473
Query 521 ATCAGTGATC-TTTTAGTATGTTTATGGAGGTTAACCCCTGAGAGTGTTGGGTTCTGATT 579
|||||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||
Sbjct 474 ATCAGTGATCTTTTTAGTCTGTTTATGGAAGTTAACCCCTGAGAGTGTTGGGTTCTGATT 533
Query 580 TTTCTACCGTGAAGGTCTTTGATTTAGATGATGAAGATTGTATGACTGGTCCAGAGTTGC 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 TTTCTACCGTGAAGGTCTTTGATTTAGATGATGAAGATTGTATGACTGGTCCAGAGTTGC 593
Query 640 TTGTA 644
|||||
Sbjct 594 TTGTA 598
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35034960723
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5