BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28450.1
Length=1750
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945186 jgi|Araly1|945186|scaffold_701415.1 2353 0.0
> Ahg945186 jgi|Araly1|945186|scaffold_701415.1
Length=1400
Score = 2353 bits (1274), Expect = 0.0
Identities = 1360/1402 (97%), Gaps = 4/1402 (0%)
Strand=Plus/Plus
Query 107 CCTTTTTGTAGTATTAAGCAATGAAGATTAAGACGTTATCAAGATCGGTTGATGAATACA 166
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CCTTTTCGTAGTCGTAAGCAATGAAGATTAAGACGTTATCAAGATCGGTTGATGAATACA 60
Query 167 CTCGAGAAAGAAGTCAGGATCTTCAGAGGGTCTTTCACAACTTCGACCCAAGTCTTCGAC 226
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 61 CTCGAGAAAGAAGTCAGGATCTTCAGAGGGTCTTTCACAACTTCGACCCAAGTCTTCGGC 120
Query 227 CTATGGAGAAGGCCGTGGAATACCAGAGAGCTCTTACAGCTGCCAAATTAGAAAAGATAT 286
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CTATGGAGAAGGCTGTGGAATACCAGAGAGCTCTTACAGCTGCCAAATTAGAAAAGATAT 180
Query 287 TTGCAAGGCCGTTTGTTGGAGCAATGGATGGTCATCGTGATGGAGTCTCATGTATGGCGA 346
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGCAAGGCCCTTTGTTGGAGCAATGGATGGTCATCGTGATGGAGTCTCATGTATGGCGA 240
Query 347 AGAACCCAAATTACCTCAAAGGAATCTTCTCTGCTTCTATGGATGGAGATATTCGCCTTT 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGAACCCAAATTACCTCAAAGGAATCTTCTCTGCTTCTATGGATGGAGATATTCGCCTTT 300
Query 407 GGGATATCTCTTCAAGGCGTACAGTTTGCCAATTCCCTGGTCATCAAGGTGCTGTGCGTG 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGGATATCTCTTCAAGGCGTACAGTTTGCCAATTCCCTGGTCATCAAGGTGCTGTGCGTG 360
Query 467 GTCTTACTGCATCAACCGATGGAAATGTATTGGTTTCATGCGGAACTGATTGCACTGTTC 526
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 361 GTCTTACAGCATCAACCGATGGCAATGTATTGGTTTCATGCGGAACTGATTGCACTGTTC 420
Query 527 GTTTGTGGAATGTTCCTCGTCCTTCACTTGAAGATTCTAGCATTTCATCTGAGAATTTCA 586
||||||||||||||||||||||| |||| |||||||||| ||||||||||||||||| ||
Sbjct 421 GTTTGTGGAATGTTCCTCGTCCTACACTAGAAGATTCTACCATTTCATCTGAGAATTCCA 480
Query 587 TTGAGCCATCTGCAACCTATGTCTGGAAGAATGCTTTCTGGGCTGTTGATCATCAGTTTG 646
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TTGAGCCATCTGCAACTTATGTCTGGAAGAATGCTTTCTGGGCTGTTGATCATCAGTTTG 540
Query 647 AAGGTGACCTTTTTGCTACGGCCGGAGCTCAACTTGATATATGGAATCATAATAGGTCTC 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AAGGTGACCTTTTTGCTACGGCCGGAGCTCAACTTGATATATGGAATCATAATAGGTCTC 600
Query 707 AGCCAGTTCAGAGTTTCCAGTGGGGAACTGACTCTGTAATATCTGTTCGGTTTAATCCTG 766
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 AGCCAGTTCAGAGTTTCCAGTGGGGAACTGACTCTGTAATATCTGTTCGGTTTAATCCTG 660
Query 767 GAGAGCCTAATTTATTGGCTACATCAGCTAGTGACCGGAGCATAACCATATATGATCTCC 826
|||||||| || |||| |||||||| ||||| ||||| ||||||||||||||||||||||
Sbjct 661 GAGAGCCTGATATATTAGCTACATCTGCTAGCGACCGCAGCATAACCATATATGATCTCC 720
Query 827 GCT-TGTCTTCTGCGGCAAGGAAAATTATCATGATGACAAAAACAAATTCAATTGCATGG 885
| | ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 G-TATGTCTTCTGCGGCGAGGAAAATTATCATGATGACAAAAACAAATTCAATTGCATGG 779
Query 886 AACCCCATGGAGCCTATGAACCTGACAGCTGCTAATGAAGATGGAAGTTGCTATAGCTTT 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 AACCCCATGGAGCCTATGAACCTGACAGCTGCTAATGAAGATGGAAGTTGCTATAGCTTT 839
Query 946 GATGGTAGAAAGTTGGACGAAGCCAAGTGCGTGCATAAAGATCATGTTTCTGCAGTGATG 1005
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 840 GATGGTAGAAAGTTGGACGAAGCCAAGTGTGTGCATAAAGATCATGTTTCTGCAGTGATG 899
Query 1006 GATATTGACTTTTCACCGACTGGTCGTGAGTTTGTTACGGGTTCTTATGATCGATCTGTG 1065
||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 GATATTGACTTTTCACCAACTGGTCGTGAATTTGTTACGGGTTCTTATGATCGATCTGTC 959
Query 1066 AGAATCTTCCCATACAATGGAGGACACAGCAGGGAAATCTACCATACAAAGAGGATGCAG 1125
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 960 AGAATCTTCCCATACAATGGAGGTCACAGCAGGGAAATCTACCATACAAAGAGGATGCAG 1019
Query 1126 AGAGTATTCTGTGTCAAATATAGCTGTGATGCTACATATGTAATATCGGGCAGTGATGAC 1185
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 AGAGTATTCTGTGTCAAGTATAGCTGTGATGCTACATATGTAATATCGGGCAGTGATGAC 1079
Query 1186 ACCAATCTCAGGCTATGGAAGGCAAAGGCATCAGAGCAATTGGGAGTTATTCTTCCAAGG 1245
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1080 ACCAATCTCAGGCTATGGAAGGCAAAAGCATCAGAGCAATTGGGAGTTATTCTTCCAAGG 1139
Query 1246 GAACAAAAGAAGCATGAGTACAACGAGGCTGTGAAGAACCGGTACAAGCATCTTTCTGAG 1305
||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 GAACAGAAGAAGCATGAGTACAACGAGGCTGTGAAGAACCGGTACAAGCATCTTCCTGAG 1199
Query 1306 GTTAAGCGCATTGTGAGACACAGGCACTTGCCAAAACCAATATACAAAGCGATGG-GTAT 1364
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||
Sbjct 1200 GTTAAGCGCATTGTGAGACACAGGCACTTGCCAAAACCAATATACAAAGCAATGGCG-AT 1258
Query 1365 CATTCGAACTGTGAACGATTCGAAGAGAAGAAAAGAAGCACGAAGGAAAGCTCACAGTGC 1424
||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1259 CATCCGAACCGTGAACGATTCGAAGAGAAGAAAAGAAGCTCGAAGGAAAGCTCACAGTGC 1318
Query 1425 TCCAGGAACAGTGGTCACAGCACCTCTGCGCAAAAGAAAGATCATCAAAGAAGTGGAGTG 1484
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1319 TCCAGGAACAGTGGTCACAAAACCTCTGCGCAAAAGAAAGATCATCAAAGAAGTCGAGTG 1378
Query 1485 ACTCTACTCTTTCTCCGTTTGT 1506
| | ||||||||||||||||||
Sbjct 1379 AGTTTACTCTTTCTCCGTTTGT 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65667582380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5