BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28460.1 Length=547 Score E Sequences producing significant alignments: (Bits) Value Ahg491924 jgi|Araly1|491924|fgenesh2_kg.7__1357__AT4G28460.1 647 0.0 > Ahg491924 jgi|Araly1|491924|fgenesh2_kg.7__1357__AT4G28460.1 Length=515 Score = 647 bits (350), Expect = 0.0 Identities = 454/499 (91%), Gaps = 27/499 (5%) Strand=Plus/Plus Query 56 GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT 115 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 37 GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT 96 Query 116 GATTGTGGTTGTGATGGTGTCGTTGTTTTTCGTAGAACACGTGGTGGTTCCGGCTGCGGC 175 ||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 97 GATTGTGGTTGTGATGGTGGCGTTGTTTTTCGTAGAACACGTAGTGGTTCCGGCTGCGGC 156 Query 176 GGGGAGGGTTCTTACTGAAAAATCGGGAGATGGAAGTGCGACTATGACGGTGGAGAAGAT 235 ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 157 GGGGAGGGTTCTTACGGAAAAATCGGGAGATGGAAGTGCGACGCTGACGGTGGAGAAGAT 216 Query 236 GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG 295 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 217 GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG 276 Query 296 CGGCCATTAAAttttccttttttactttttttttCCTGGCCGGAGGAGATTAATTAATCT 355 |||||||| ||||| || |||| | ||||| |||||||||||||||||| Sbjct 277 CGGCCATTGAATTT-CC-------CTTT------C-TGGCCTGAGGAGATTAATTAATCT 321 Query 356 CGATATACCCCATATGTATACCAGAACAAACGGTGAAAACTGTATTCCATTCATTTATTT 415 |||||||||| || ||||||||| ||||||||||||||| |||||||||||||||| ||| Sbjct 322 CGATATACCC-ATGTGTATACCACAACAAACGGTGAAAATTGTATTCCATTCATTTGTTT 380 Query 416 CATTATTTGttttttttttCTTTAGGCAAAGTTCATATAGTTAGTGACAGAAACTAAAAC 475 |||||||| ||||||| |||||| ||||||||||||| |||||||||||||||||||| Sbjct 381 CATTATTT-TTTTTTT---CTTTAGACAAAGTTCATATATTTAGTGACAGAAACTAAAAC 436 Query 476 CCTCAATATACA-TG-TACATG-AT-T--TT-TGCTTTTGCTGGTTGCTAATTTTAATAA 528 |||||||||||| | |||||| | | || | |||||| ||||||||||||||||||| Sbjct 437 CCTCAATATACAATTATACATGTACATGATTATACTTTTGTTGGTTGCTAATTTTAATAA 496 Query 529 GATTTTATACTTCTGGTTT 547 ||||| ||||||||||||| Sbjct 497 GATTTCATACTTCTGGTTT 515 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 19955373047 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5