BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28460.1

Length=547
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491924 jgi|Araly1|491924|fgenesh2_kg.7__1357__AT4G28460.1         647    0.0  


> Ahg491924 jgi|Araly1|491924|fgenesh2_kg.7__1357__AT4G28460.1
Length=515

 Score =  647 bits (350),  Expect = 0.0
 Identities = 454/499 (91%), Gaps = 27/499 (5%)
 Strand=Plus/Plus

Query  56   GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT  115
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  37   GTACAACATAAAGAAGAGAAAGTAAAATACGATGAGAAGAGTTAGTTGGTCTACTGTTTT  96

Query  116  GATTGTGGTTGTGATGGTGTCGTTGTTTTTCGTAGAACACGTGGTGGTTCCGGCTGCGGC  175
            ||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct  97   GATTGTGGTTGTGATGGTGGCGTTGTTTTTCGTAGAACACGTAGTGGTTCCGGCTGCGGC  156

Query  176  GGGGAGGGTTCTTACTGAAAAATCGGGAGATGGAAGTGCGACTATGACGGTGGAGAAGAT  235
            ||||||||||||||| ||||||||||||||||||||||||||  ||||||||||||||||
Sbjct  157  GGGGAGGGTTCTTACGGAAAAATCGGGAGATGGAAGTGCGACGCTGACGGTGGAGAAGAT  216

Query  236  GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG  295
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  217  GAAATCGACGGTGGATTCTTGGTTTCAGCGTTTGGCGTCGGGTCCAAGTCCAAGAGGTCG  276

Query  296  CGGCCATTAAAttttccttttttactttttttttCCTGGCCGGAGGAGATTAATTAATCT  355
            |||||||| ||||| ||       ||||      | ||||| ||||||||||||||||||
Sbjct  277  CGGCCATTGAATTT-CC-------CTTT------C-TGGCCTGAGGAGATTAATTAATCT  321

Query  356  CGATATACCCCATATGTATACCAGAACAAACGGTGAAAACTGTATTCCATTCATTTATTT  415
            |||||||||| || ||||||||| ||||||||||||||| |||||||||||||||| |||
Sbjct  322  CGATATACCC-ATGTGTATACCACAACAAACGGTGAAAATTGTATTCCATTCATTTGTTT  380

Query  416  CATTATTTGttttttttttCTTTAGGCAAAGTTCATATAGTTAGTGACAGAAACTAAAAC  475
            |||||||| |||||||   |||||| ||||||||||||| ||||||||||||||||||||
Sbjct  381  CATTATTT-TTTTTTT---CTTTAGACAAAGTTCATATATTTAGTGACAGAAACTAAAAC  436

Query  476  CCTCAATATACA-TG-TACATG-AT-T--TT-TGCTTTTGCTGGTTGCTAATTTTAATAA  528
            |||||||||||| |  |||||| |  |  || | |||||| |||||||||||||||||||
Sbjct  437  CCTCAATATACAATTATACATGTACATGATTATACTTTTGTTGGTTGCTAATTTTAATAA  496

Query  529  GATTTTATACTTCTGGTTT  547
            ||||| |||||||||||||
Sbjct  497  GATTTCATACTTCTGGTTT  515



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19955373047


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5