BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28485.1
Length=584
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889289 jgi|Araly1|889289|Al_scaffold_0007_1275 640 0.0
> Ahg889289 jgi|Araly1|889289|Al_scaffold_0007_1275
Length=603
Score = 640 bits (346), Expect = 0.0
Identities = 400/425 (94%), Gaps = 7/425 (2%)
Strand=Plus/Plus
Query 79 GTCAGTGTCCCACCATCACCAGTCGCTGGCTCACCTGCTTCCTCGTCTCCTTATGCGCCA 138
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 179 GTCAGTGTCCCACCATCACCAGTCGATGGCTCACCTGCTTCCTCGTCTCCCTATGCGCCA 238
Query 139 TCTCCTGCTTCCTCTTCTCCTTTACCGACTCCATTAGAGACCCAAACGGC-A----AGGT 193
|||| ||||||||||||||||||||||||||||| ||||||||||||||| | ||||
Sbjct 239 TCTCTTGCTTCCTCTTCTCCTTTACCGACTCCATCAGAGACCCAAACGGCAAGGTTAGGT 298
Query 194 ACGGGTTGGCAACGTGGAGTGGGCTAT-TAGTGATGGATGGATCGATTACTTTAACGGAG 252
|||| |||||||||||||||||||||| | ||||| ||||||||||||||| ||||||||
Sbjct 299 ACGGATTGGCAACGTGGAGTGGGCTATGT-GTGATAGATGGATCGATTACTCTAACGGAG 357
Query 253 GAGGAGAAGGAAAAGTATAAGCTCAAGATTCTTGATTTTATTCACGCAATCATGTCAATG 312
||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 358 GAGGAGAGGGAAAAGTATAAGCTCAAGATTCTTGATTTTGTGCACGCAATCATGTCAATG 417
Query 313 CTCGTCTTCTTCGCAGTCTCCATGTTTGATCAGAACGTAACCCGTTGTTTATTCCCCGTT 372
||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 418 CTCGTCTTCTTCGCAGTCTCCATGTTTGATCAGAACGTAACCCGTTGTTTATTTCCTGTT 477
Query 373 CCTTCCGAGGAAACCAAGGAGATTCTTACCAGTTTACCTTTTGTCATCGGCGTCATTTGT 432
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 478 CCTTCCGAGGAAACCAAGGAGATTCTTACCAGTTTACCTTTTATCATCGGCATCATTTGT 537
Query 433 GGTGCCTTCTTCCTAGCGTTCCCTACACGCCGTCATGGCATCGGATCTCCCCTTACCAAA 492
|| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 538 GGCGCCTTCTTCCTCGCATTCCCCACACGCCGTCATGGCATCGGATCTCCCCTTACCAAA 597
Query 493 GAATA 497
|||||
Sbjct 598 GAATA 602
Score = 143 bits (77), Expect = 2e-33
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGAGACGAAGCAGTCATTGATAGCATCGTTGCCGTCGGCACCAAGAAAACCAAAG 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGAGGAGACGAAGCAGTCATTGATAGCATCGTTGCCGGCGGCACCAAGAAAACCAAAG 60
Query 61 TCGAAAGTAGAGAGAGTTGT 80
||||||||||||||||||||
Sbjct 61 TCGAAAGTAGAGAGAGTTGT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 21367129840
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5