BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28490.1
Length=3243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491919 jgi|Araly1|491919|fgenesh2_kg.7__1352__AT4G28490.1 4680 0.0
> Ahg491919 jgi|Araly1|491919|fgenesh2_kg.7__1352__AT4G28490.1
Length=3225
Score = 4680 bits (2534), Expect = 0.0
Identities = 3018/3250 (93%), Gaps = 39/3250 (1%)
Strand=Plus/Plus
Query 8 AAGAAGAATAACGATTCCT-TTTCCaaaaaaaTGCTTTATTGTCTTATTCTCCTCCTATG 66
|||||||||||||||| || |||||||||||||| ||||||||||||||||||| |||||
Sbjct 1 AAGAAGAATAACGATT-CTCTTTCCAAAAAAATGTTTTATTGTCTTATTCTCCTACTATG 59
Query 67 TCTCTCTTCTACGTATCTACCAAGTCTATCTCTAAACCAAGATGCCACCATTCTCCGGCA 126
||||||||||||||| | ||||| |||||||| ||||||||||||||||||||||||||
Sbjct 60 TCTCTCTTCTACGTA--T-CCAAGCCTATCTCTGAACCAAGATGCCACCATTCTCCGGCA 116
Query 127 AGCCAAACTGGGCTTATCCGACCCGGCCCAGTCCCTATCTTCATGGTCCGACAACAACGA 186
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 117 AGCCAAACTGGGCTTATCCGACCCGGCCCAGTCCCTATCTTCGTGGTCCGACAACAACGA 176
Query 187 CGTCACCCCATGCAAGTGGCTAGGCGTGAGCTGCGACGCCACGTCAAACGTTGTCTCCGT 246
|||||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 177 CGTCACCCCATGCACGTGGCGAGGCGTGAGCTGCGACGACACGTCAGCCGTTGTCTCCGT 236
Query 247 CGATCTCTCAAGCTTCATGCTCGTCGGACCTTTCCCCTCCATCCTCTGCCACCTTCCTTC 306
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 237 CGATCTCTCAAGCTTCATGCTCGTCGGACCTTTCCCCTCCATCCTCTGCAACCTTCCTTC 296
Query 307 TCTCCA-TTCCCTCTCTCTATATAATAACTCCATCAATGGCTCTCTCTCCGCCGACGACT 365
|||||| || ||||||||||||||| |||||||||||||| |||||||||| |||||||
Sbjct 297 TCTCCACTT-CCTCTCTCTATATAACAACTCCATCAATGGTTCTCTCTCCGGTGACGACT 355
Query 366 TCGATACGTGTCACAATCTCATCAGTCTTGATTTATCGGAGAATCTATTGGTTGGATCCA 425
|| | ||||||| |||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 356 TCAACACGTGTCGGAATCTCATCAGTCTCGATTTATCGGAGAATCTTTTGGTTGGATCCA 415
Query 426 TCCCAAAGTCACTTCCTTTCAATCTCCCAAACCTCAAGTTCCTTGAAATCTCCGGAAACA 485
||||||||||||||||||||||||| || |||||||||||||| || ||||||| ||||
Sbjct 416 TCCCAAAGTCACTTCCTTTCAATCTTCCGAACCTCAAGTTCCTCGAGTTCTCCGGGAACA 475
Query 486 ACTTATCAGACACGATCCCGT-CGAGCTTCGGAGAGTTTCGAAAGCTTGAGTCTTTAAAC 544
||||||||||||||||||| | |||||||||||||||| | |||||| ||||||||||||
Sbjct 476 ACTTATCAGACACGATCCC-TGCGAGCTTCGGAGAGTTCCAAAAGCTAGAGTCTTTAAAC 534
Query 545 CTCGCCGGTAACTTCCTCTCCGGTACAATTCCCGCCTCTCTCGGTAACGTCACGACTCTT 604
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 535 CTCGCCGGTAACTTCCTCTCCGGCACAATTCCCGCCTCTCTCGGTAACGTCACGACTCTT 594
Query 605 AAAGAACTCAAACTCGCTTACAATTTGTTTTCTCCGAGTCAAATCCCGAGTCAACTCGGA 664
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 595 AAAGAACTCAAACTCGCTTACAATTTGTTTTCTCCGAGTCAAATCCCGAGCCAACTCGGA 654
Query 665 AACCTCACGGAGCTCCAAGTTCTCTGGCTCGCCGGCTGCAACCTCGTCGGTCC-GATACC 723
|| || ||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 655 AATCTGACGGAGCTCCAAGTTCTCTGGCTCGCCGGCTGCAACCTCGTCGGTCCAG-TACC 713
Query 724 TCC-GTCTCTGTCCCGG-TTAACTAGTTTGGTTAACTTGGATTTGACATTTAACCAACTC 781
||| | |||||||| || |||||| ||||||||||||||||| ||||||| |||| ||||
Sbjct 714 TCCAG-CTCTGTCC-GGATTAACTCGTTTGGTTAACTTGGATATGACATTAAACCGACTC 771
Query 782 ACAGGATCTATCCCAAGTTGGATCACGCAGCTAAAAACCGTCGAGCAAATCGAACTATTC 841
|||||||| ||||||||||||||||| |||||||| ||||| ||||||||||||||||||
Sbjct 772 ACAGGATCCATCCCAAGTTGGATCACACAGCTAAAGACCGTTGAGCAAATCGAACTATTC 831
Query 842 AACAACTCGTTCTCAGGCGAGTTACCAGAATCCATGGGTAACATGACGACGCTAAAAAGA 901
|||||||||||||||||||||||||| ||| | ||||||||||||||| |||||||||||
Sbjct 832 AACAACTCGTTCTCAGGCGAGTTACCGGAAGCTATGGGTAACATGACGTCGCTAAAAAGA 891
Query 902 TTCGACGCGTCGATGAATAAGCTGACAGGAAAAATACCCGACAACTTGAATCTGTTAAAC 961
||||||||||||||||| |||||| ||| || ||||||||| ||| ||||||||||||
Sbjct 892 TTCGACGCGTCGATGAACCAGCTGAGAGGGAAGATACCCGACGGCTTAAATCTGTTAAAC 951
Query 962 CTCGAGTCACTCAATCTCTTCGAGAACATGCTCGAAGGTCCTTTACCGGAGAGCATAACT 1021
||||||||||||||||||||||||||||||||||||||||| || || ||||||||||||
Sbjct 952 CTCGAGTCACTCAATCTCTTCGAGAACATGCTCGAAGGTCCCTTGCCAGAGAGCATAACT 1011
Query 1022 CGCTCCAAAACCTTGTCAGAACTCAAGCTTTTCAACAACAGACTCACCGGAGTATTACCG 1081
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1012 CGCTCCAAAACCTTGTCAGAACTCAAGCTTTTCAACAACAGACTCACCGGAACAGTACCG 1071
Query 1082 AGTCAACTCGGCGCTAACTCACCGTTACAGTACGTGGAC-TTATCGTATAACCGATTTTC 1140
|||||||||||||||||||| |||||||||||||||||| || |||||||||||||||||
Sbjct 1072 AGTCAACTCGGCGCTAACTCTCCGTTACAGTACGTGGACCTT-TCGTATAACCGATTTTC 1130
Query 1141 CGGCGAAATACCGGCGAATGTCTGCGGTGAAGGGAAGCTAGAGTATCTAATTCTTATAGA 1200
|||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 CGGCGAAATACCAGCGAATCTCTGCGGTGAAGGGAAGCTAGAGTATCTAATTCTTATAGA 1190
Query 1201 CAATTCGTTTTCAGGAGAAATCTCTAATAATCTCGGAAAGTGTAAGAGCTTGACCCGGGT 1260
||||||||| || ||||||||||| |||||||| |||| ||||||||||||||| |||||
Sbjct 1191 CAATTCGTTCTCCGGAGAAATCTCGAATAATCTAGGAATGTGTAAGAGCTTGACTCGGGT 1250
Query 1261 CCGATTGAGTAACAACAAGCTTTCGGGTCAAATCCCACATG-GATTCTGGGGATTGCCTC 1319
|||||||||||||||||| ||||||||||| |||||| | | | ||||||||||||||||
Sbjct 1251 CCGATTGAGTAACAACAATCTTTCGGGTCATATCCCAGACGAG-TTCTGGGGATTGCCTC 1309
Query 1320 GCTTGTCACTTCTCGAACTCTCTGACAATTCGTTCACCGGAAGTATTC-CTAAGACGATC 1378
|||||||||| |||||||||||||| ||||| |||||||||||||||| | |||||||||
Sbjct 1310 GCTTGTCACTGCTCGAACTCTCTGAAAATTCATTCACCGGAAGTATTCAC-AAGACGATC 1368
Query 1379 ATCG-GCGCGAAGAATCTATCGAACCTACGAATCTCAAAGAATCGATTTTCAGGTTCAAT 1437
|| | ||||||||||||||||||||||||||||||||||||| ||||||||| || ||
Sbjct 1369 -TCCAGTGCGAAGAATCTATCGAACCTACGAATCTCAAAGAATCAATTTTCAGGCTCCAT 1427
Query 1438 CCCCAACGAAATCGGATCGCTTAACGGAATAATCGAGATTTCCGGAGCGGAGAATGATTT 1497
||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||
Sbjct 1428 ACCCAACGAAATCGGATCGCTTAAAGGACTGATCGAGATTTCCGGAGCGGAGAATGATTT 1487
Query 1498 CTCCGGTGAGATTCCT-GAAAGCTTGGTGAAATTGAAGCAATTGAGCAGGCTTGATCTCA 1556
| ||||||| |||||| | | ||||||||||||||||||| |||||||||||||||||||
Sbjct 1488 CACCGGTGAAATTCCTAGTA-GCTTGGTGAAATTGAAGCAGTTGAGCAGGCTTGATCTCA 1546
Query 1557 GTAAGAATCAACTCTCCGGTGAGATTCCTAGAG-AACTTC-GTGGTTGGAAGAATCTAAA 1614
||||||||||||||||||| |||||||||| || || | | |||||||||||||||||||
Sbjct 1547 GTAAGAATCAACTCTCCGGCGAGATTCCTAAAGGAA-T-CAGTGGTTGGAAGAATCTAAA 1604
Query 1615 CGAGCTTAATTTGGCTAATAATCATCTCTCCGGTGAAATCCCTAAAGAAGTCGGAATCTT 1674
||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| ||
Sbjct 1605 TGAGCTCAATTTGGCTAATAATCATCTCTCCGGTGAAATCCCTAGAGAAGTCGGAATGTT 1664
Query 1675 ACCTGTTCTCAATTACCTTGACCTTTC-AAGCAATCAATTCTCCGGTGAGATTCCGTTGG 1733
||||||||||||||||||||| || || || |||||||||||||||||| ||||||||||
Sbjct 1665 ACCTGTTCTCAATTACCTTGATCTCTCCAA-CAATCAATTCTCCGGTGAAATTCCGTTGG 1723
Query 1734 AGTTACAGAATCTGAAGCTAAACGTTTTAAACCTTTCGTATAATCACCTCTCCGGTAAAA 1793
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 1724 AGTTACAGAATCTGAAGCTAAACGTTTTAAATCTTTCGTATAATCACCTCTCCGGCAAAG 1783
Query 1794 TCCCTCCTCTCTACGCTAATAAAATCTACGCACATGACTTCATCGGAAATCCCGGTTTAT 1853
| |||||||||||||| ||||||||||||| ||||||||| |||| |||||||||||||
Sbjct 1784 TTCCTCCTCTCTACGCGAATAAAATCTACGTTCATGACTTCCTCGGCAATCCCGGTTTAT 1843
Query 1854 GTGTTGATCTCGACGGCCTTTGTCGGAAGATCACACGGTCTAAAAACATCGGCTATGTAT 1913
| |||||||||||||| ||||||||||||||||||||||||| |||||| || ||||| |
Sbjct 1844 GCGTTGATCTCGACGGTCTTTGTCGGAAGATCACACGGTCTAGAAACATTGGTTATGTTT 1903
Query 1914 GGATTCTTTTAACGATTTTCTTACTCGCCGGTTTGGTTTTCGTTGTCGGGATCGTTATGT 1973
||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 1904 GGATTCTCCTAACGATTTTCTTACTCGCCGGTTTGGTTTTTGTCGTCGGGATCGTTATGT 1963
Query 1974 TCATTGCCAAGTGTAGAAAACTCAGAGCTTTGAAGAGTTCTACTTTAGCAGCGTCGAAAT 2033
||||||||||||| |||||||||||||| |||||||| |||| ||| |||||||| ||||
Sbjct 1964 TCATTGCCAAGTGCAGAAAACTCAGAGCCTTGAAGAGCTCTAATTTGGCAGCGTCTAAAT 2023
Query 2034 GGAGATCATTCCACAAGCTTCATTTCAGTGAGCACGAGATAGCTGATTGTCTCGATGAAA 2093
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2024 GGAGATCCTTCCATAAGCTTCATTTCAGTGAGCACGAGATAGCTGATTGTCTCGATGAAC 2083
Query 2094 AGAACGTAATCGGGTTTGGATCTTCTGGTAAAGTCTATAAAGTTGAGCTTAGAGGTGGAG 2153
||||||||| || | ||||||||| |||||||| ||||||| ||||||||| || ||||
Sbjct 2084 GGAACGTAATAGGATCTGGATCTTCAGGTAAAGTGTATAAAGCTGAGCTTAGCGGCGGAG 2143
Query 2154 AAGTTGTAGCTGTGAAGAAACTTAACAAAAGTGTTAAAGGAGGAGATGATGAATACAGTA 2213
|||||||||||||||||||||| ||||||| |||||||| ||||||||| | ||||||
Sbjct 2144 AAGTTGTAGCTGTGAAGAAACTCAACAAAACTGTTAAAGAAGGAGATGA--A-TACAGT- 2199
Query 2214 GTGATTCGTTGAATAGAGATGTTTTTGCAGCGGAGGTTGAAACGTTGGGGACGATTAGGC 2273
| ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||
Sbjct 2200 G--ATTCGTTGAATAGAGATGTTTTTGCTGCGGAGGTCGAAACGTTGGGAACGATTAGGC 2257
Query 2274 ACAAGAGTATTGTGCGTTTGTGGTGTTGTTGCAGCTCTGGTGATTGTAAGTTGTTGGTGT 2333
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 2258 ATAAGAGTATTGTGCGTTTGTGGTGTTGTTGCAGCTCCGGTGATTGTAAGTTGTTGGTAT 2317
Query 2334 ATGAGTACATGCCTAATGGGAGCTTAGCTGATGTGTTGCATGGTGACCGCAAAGGCGGTG 2393
| |||||||||||||||||||||||||||||||||||||| || |||||||||||||| |
Sbjct 2318 ACGAGTACATGCCTAATGGGAGCTTAGCTGATGTGTTGCACGGGGACCGCAAAGGCGGGG 2377
Query 2394 TTGTGTTGGGTTGGCCAGAGCGGTTGAGGATTGCTTTGGACGCTGCCGAGGGTTTATCAT 2453
| |||||||||||||||||||||||||| || |||||||| ||||| || ||| ||||||
Sbjct 2378 TGGTGTTGGGTTGGCCAGAGCGGTTGAGAATCGCTTTGGATGCTGCTGAAGGTCTATCAT 2437
Query 2454 ACTTGCACCATGATTGTGTTCCTCCCATTGTGCACCGCGATGTGAAGTCGAGTAACATAC 2513
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2438 ACTTGCACCATGATTGCGTTCCTCCCATTGTGCACCGCGATGTGAAGTCGAGTAACATAC 2497
Query 2514 TGCTAGATAGCGATTATGGGGCTAAAGTTGCTGACTTTGGGATCGCTAAAGTCGGTCAGA 2573
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2498 TGCTAGATAGAGATTATGGGGCCAAAGTTGCTGACTTTGGGATCGCTAAAGTCGGTCAGA 2557
Query 2574 TGAGTGGTTCCAAAACTCCAGAAGCTATGTCCGGGATCGCCGGTTCTTGTGGTTACATTG 2633
|||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2558 TGAGCGGTTCCAAAACTCCAGAAGCTATGTCCGGGATCGCCGGTAGTTGTGGTTACATTG 2617
Query 2634 CACCAGAATACGTATACACACTTCGGGTGAATGAAAAGAGCGATATCTACAGCTTTGGTG 2693
||||||| |||||||| || ||||||||||||||||||||||||||||||||||| ||||
Sbjct 2618 CACCAGAGTACGTATATACGCTTCGGGTGAATGAAAAGAGCGATATCTACAGCTTCGGTG 2677
Query 2694 TGGTGCTTTTGGAACTGGTTACAGGGAAGCAACCAACTGATTCAGAACTTGGAGATAAAG 2753
||||||||||||||||||||||||||||||||||||| ||| ||||||| ||| ||||||
Sbjct 2678 TGGTGCTTTTGGAACTGGTTACAGGGAAGCAACCAACGGATCCAGAACTCGGAAATAAAG 2737
Query 2754 ATATGGCAAAATGGGTGTGCACTGCACTTGACAAATGCGGTTTAGAACCCGTGATCGATC 2813
||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2738 ATATGGCGAAATGGGTGTGCACTACACTTGACAAATGCGGTTTAGAACCCGTGATCGATC 2797
Query 2814 CCAAACTCGATCTCAAGTTCAAAGAAGAAATTAGTAAAGTCATTCACATTGGTCTACTCT 2873
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2798 CCAAACTCGATCTCAAGTTCAAAGAAGAAATAAGTAAAGTCATTCACATTGGTCTACTCT 2857
Query 2874 GTACGAGTCCTCTCCCTCTAAACAGACCTTCCATGAGAAAAGTTGTGATCATGCTTCAAG 2933
|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2858 GTACCAGTCCTCTCCCTCTAAACCGACCTTCCATGAGAAAAGTTGTGATCATGCTTCAAG 2917
Query 2934 AAGTCTCTGGTGCTGTTCCTTGTAGCAGTCCAAACACATCTAAACGATCTAAAACCGGTG 2993
||||||||||||||||| |||||||||||||||||| ||||||||| || || | ||||
Sbjct 2918 AAGTCTCTGGTGCTGTTTCTTGTAGCAGTCCAAACATATCTAAACGCTCCAAGAGTGGTG 2977
Query 2994 GGAAACTCTCGCCTTACTACACGGAAGACTTGAACAGCGTTTGAACATTCCAATATGGGC 3053
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2978 GGAAACTCTCGCCTTACTACACGGAAGACTTGAACAGCGTTTGAACATTCCAATATGGGC 3037
Query 3054 TGAGAATCGGTTTGGGCCGGGGATAGCAATTTGATGTTATGATGCTAGGTGAACTGTAAG 3113
||||| | |||| ||||| || |||||||||||||| |||||||||||||||| ||||||
Sbjct 3038 TGAGATTGGGTT-GGGCCCGG-ATAGCAATTTGATGCTATGATGCTAGGTGAATTGTAAG 3095
Query 3114 AAAGATATCAAAAACAGAAAAGTGGAGCTTTCTGATTAGGTAATTGCTCTTAAAGCTAAT 3173
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3096 AAAGATATCAGAAACAGAAAAGTGGAGCTTTCTGATTAGGTAATTGCTCTTAATGCTAAT 3155
Query 3174 ATAAAGTTATAATTTGGATATTAATTTTAATTTAACGCAATATTTGCAATATTTGGTGGT 3233
||||||||||| ||||||||||| |||||| |||| ||||| ||||||||||||||||||
Sbjct 3156 ATAAAGTTATAGTTTGGATATTAGTTTTAAATTAATGCAATGTTTGCAATATTTGGTGGT 3215
Query 3234 TGGTCCACCC 3243
||||||||||
Sbjct 3216 TGGTCCACCC 3225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 122393154768
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5