BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28500.1
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889287 jgi|Araly1|889287|Al_scaffold_0007_1273 1454 0.0
> Ahg889287 jgi|Araly1|889287|Al_scaffold_0007_1273
Length=912
Score = 1454 bits (787), Expect = 0.0
Identities = 874/916 (95%), Gaps = 6/916 (1%)
Strand=Plus/Plus
Query 355 ATGACTTGGTGCAATGACCGTAGCGATGTTCAGACCGTTGAAAGAATCATTCCCTCCCCG 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACTTGGTGCAATGACCGTAGCGATGTTCAGACCGTTGAAAGAATCATTCCCTCCCCT 60
Query 415 GGGGCGGCTGAGTCCCCCGTAGCCTCACTTCCGGTCTCTTGTCACAAAACTTGCCCTTCT 474
|||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 CCGGCGCCTGAGTCCCCGGTAGCCTCACTTCCGGTCTCTTGTCACAAAACTTGTCCTTCT 120
Query 475 TGTGGCCATAACTTCAAGTTTCACGAACAGGCTGGGATCCATGACTTGCCGGGACTTCCT 534
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 121 TGTGGCCATAACTTCAAGTTTCATGAACAGGCGGGGATCCATGACTTGCCGGGACTTCCT 180
Query 535 GCTGGAGTAAAATTTGATCCGACGGATCAAGAGGTCTTGGAGCATCTTGAAGGCAAGGTA 594
|||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 181 GCTGGAGTGAAATTTGATCCGACGGATCAAGAGGTCTTGGAGCATCTTGAAGGGAAGGTA 240
Query 595 AGAGATGACGCAAAAAAGCTTCATCCTCTCATTGATGAGTTTATCCGTACCATCGATGGT 654
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 241 AGAGACGACGCAAAAAAGCTTCATCCTCTCATCGATGAGTTTATCCGTACCATCGATGGT 300
Query 655 GAAAACGGCATTTGTTATACCCATCCTGAAAAATTGCCAGGAGTGAACAAGGACGGGACG 714
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GAAAACGGCATCTGTTATACCCATCCTGAGAAATTGCCAGGAGTGAACAAGGACGGGACG 360
Query 715 GTGCGTCATTTCTTCCACCGACCGTCGAAGGCATACACGACGGGAACAAGAAAGCGACGT 774
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GTCCGTCATTTCTTCCACCGACCGTCGAAGGCATATACGACGGGAACAAGAAAGCGACGT 420
Query 775 AAAGTCCACACTGATTCTGACGTCGGTGGAGAGACACGGTGGCACAAGACAGGAAAAACA 834
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 421 AAAGTCCACACTGATTCTGACGTCGGTGGCGAGACACGGTGGCACAAGACCGGAAAAACA 480
Query 835 CGGCCAGTTCTTGCTGGAGGAAGAGTGAGAGGCTACAAGAAAATCCTAGTGCTCTACACA 894
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGCCAGTTCTCGCCGGAGGAAGAGTGAGAGGCTACAAGAAAATCCTAGTGCTCTACACA 540
Query 895 AACTACGGCAAACaaaaaaaaCCCGAGAAGACTAATTGGGTAATGCATCAATATCATCTT 954
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTACGGCAAACAAAAAAAGCCCGAGAAGACTAATTGGGTAATGCATCAATATCATCTT 600
Query 955 GGCACTAGCGAGGAAGAGAAAGAAGGTGAGCTCGTCGTCTCCAAAGTCTTTTACCAGACT 1014
||||| ||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 601 GGCACAAGCGAAGAAGAGAAAGAAGGCGAGCTCGTCGTCTCCAAAGTCTTCTACCAGACT 660
Query 1015 CAACCACGTCAATGCGGTGGCTCCGTTGCTGCTGCAGCCACCGCTAAGGACCGACCTTAC 1074
|||||||| ||||||||||||| | ||| | |||||||||||||||||||||||||||
Sbjct 661 CAACCACGCCAATGCGGTGGCT-C--TGC--C-GCAGCCACCGCTAAGGACCGACCTTAC 714
Query 1075 CTCCACGGCCTCGGTGGAGGTGGTGGCCGCCACCTTCATTACCATCTTCATCATAACAAC 1134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 CTCCACGGCCTCGGTGGAGGTGGTGGCCGCCACCTTCATTACCATCTTCATCATAACAAC 774
Query 1135 GGTAACGGTAAGAGCAACGGCAGTGGGGGAACCGCCGGAGCCGGTGAGTATTATCACAAT 1194
|| ||||||||||||||| | |||| ||| | |||||||||||||||||||||||||||
Sbjct 775 GGCAACGGTAAGAGCAACAACGGTGGAGGATCTGCCGGAGCCGGTGAGTATTATCACAAT 834
Query 1195 ATTCCGGCTATTATCTCGTTCAATCAGACCGGGATACAGAACCACTTGGTTCATGACTCT 1254
||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 835 ATTCCGGCTCTTATCTCGTTTAATCAGACCGGGATACAGAACCATTTGGTTCATGACTCT 894
Query 1255 CAACCTTTTATCCCTT 1270
||||||||||||||||
Sbjct 895 CAACCTTTTATCCCTT 910
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47539277499
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5