BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28510.1
Length=1185
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1 1570 0.0
Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 767 0.0
> Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1
Length=1016
Score = 1570 bits (850), Expect = 0.0
Identities = 943/988 (95%), Gaps = 6/988 (1%)
Strand=Plus/Plus
Query 2 CTCCAATAGAAGTCTGAGCTTAAACCCTAAACCCCTTTCTCCACGATCTTCCTTTTCCTC 61
|||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| ||
Sbjct 1 CTCCAATAGAAGTCAGAGCTTAAACCCTAAACCCCTTACTCCACGATCTTCCTCTTCATC 60
Query 62 TCTCTGCGACTTGAAGCAAAGTTTCCAG-AAAA-AGA-G-A--TGAACAACGTCAAAGTT 115
|||||| ||||||||||||||||| ||| |||| ||| | | |||||||||||||||||
Sbjct 61 TCTCTGTGACTTGAAGCAAAGTTTTCAGAAAAAGAGATGAATTTGAACAACGTCAAAGTT 120
Query 116 CCAAAGATACCAGGTGGTGGTGCCATTTCGACGTTGCTTAAGGTTGGGATTATTGGTGGG 175
|| ||| | ||||||||||||||||||||| ||||||||||| | |||||||||||||||
Sbjct 121 CCGAAGGTGCCAGGTGGTGGTGCCATTTCGGCGTTGCTTAAGATCGGGATTATTGGTGGG 180
Query 176 CTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 235
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 CTTGGTCTCTACGGTGCTACACACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 240
Query 236 ATGTTCAATCGTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 295
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATGTTCAATCGTTTAATCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 300
Query 296 ATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAG 355
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 301 GTTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGCGCTCGACCTTACCTTGTTGAG 360
Query 356 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAGGGTTCTCACACGT 415
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 361 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTCAGGGTTCTCACGCGT 420
Query 416 CCCATGGCAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGAACTACAGCGAGAGA 475
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 421 CCCATGGCAGACCAGTTACCTGAAATCTACAGAACCCTTGGTGAGAACTACAGCGAGAGA 480
Query 476 GTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 535
||||| |||||||||||| | |||||| ||||||||||||||||||||||||||||||||
Sbjct 481 GTTCTGCCTTCTATAATCCATGAGACTCTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 540
Query 536 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGA 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 541 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGCACGA 600
Query 596 GCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAG 655
|||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 601 GCAGCAAACTTCAACGTTGCGCTTGACGATGTGTCCATCACGACCCTGACATTCGGGAAG 660
Query 656 GAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 715
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 661 GAGTTCACAGCTGCCATTGAAGCCAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 720
Query 716 TTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCCCAGGGAGAA 775
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 721 TTCATCGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCACAGGGAGAA 780
Query 776 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 835
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 840
Query 836 AGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCGGCGAACAAGGTT 895
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 841 AGGAAGATAGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCTGCGAACAAGGTG 900
Query 896 TACTTGAGCTCAGACGATCTTTTGCTTAACCTACAAGGGATGAATTTGGATGTTGATGCA 955
|||||||||||||||||||| |||||||||||||||| ||||||||||||||| ||||||
Sbjct 901 TACTTGAGCTCAGACGATCTGTTGCTTAACCTACAAGAGATGAATTTGGATGTCGATGCA 960
Query 956 AAGAACTAGAGAGGTTTCTTAAGTAAAA 983
||||| |||||| |||||||||||||||
Sbjct 961 AAGAAGTAGAGATGTTTCTTAAGTAAAA 988
> Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1
Length=1113
Score = 767 bits (415), Expect = 0.0
Identities = 654/771 (85%), Gaps = 10/771 (1%)
Strand=Plus/Plus
Query 165 TTATTGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGAC 224
||||||||||||| ||||| || || ||||| ||| |||||||||||| || ||||| |
Sbjct 158 TTATTGGTGGGCTCGGTCTTTACGGCGCTACACACTCTCTCTACAATGTCGATGGAGGTC 217
Query 225 ATCGAGCCATCATGTTCAATC-GTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGT 283
||||||||||| | || || | | || || ||||| ||||| ||||| ||||||||||||
Sbjct 218 ATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGAGGGT 276
Query 284 ACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGA-CC 342
|| |||||||||||||| ||||| |||||||| ||||||||||||||||||| | ||
Sbjct 277 ACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGC-AAAGCC 335
Query 343 TTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAG 402
||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||||| |
Sbjct 336 TTATCTAGTTGAGAGTACATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCG 395
Query 403 GGTTCTCACACGTCCCATGG-CAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGA 461
|||||| || ||||| |||| || |||| |||| || | ||| | |||||||||||
Sbjct 396 GGTTCTTACCCGTCCTATGGCCA-ACCAACTACCAGAGGTATACCGGTCCCTTGGTGAGA 454
Query 462 ACTACAGCGAGAGAGTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTC 521
| ||| ||||||||||| | |||||||| ||| | ||||| |||||||||||||||||||
Sbjct 455 ATTACCGCGAGAGAGTTTTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGGTTGCTC 514
Query 522 AGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGA 581
|||||||||| |||||||||||||| ||||||||| |||| ||||| || |||||||| |
Sbjct 515 AGTACAATGCGAGCCAGCTTATTACCCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAA 574
Query 582 TTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACC 641
| || |||| |||||| ||||||||| | |||| || || ||||||||||||||| |
Sbjct 575 TCCTAACTGCACGAGCCGCAAACTTCTACATTGCACTGGATGATGTGTCCATCACAGGCT 634
Query 642 TGACATTCGGGAAGGAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGG 701
||||||| || ||||||||||| || ||||| |||| ||||||||| || ||||||||||
Sbjct 635 TGACATTTGGAAAGGAGTTCACGGCAGCCATAGAAGGAAAGCAGGTCGCAGCTCAAGAGG 694
Query 702 CTGAGCGGGCTAAGTTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCC 761
| |||||||||||||||||||| || || || ||||| |||||| ||||||| ||||| |
Sbjct 695 CCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGAAGTGCCGTTATTC 754
Query 762 GCGCCCAGGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAG 821
|||| |||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 755 GCGCTGAGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAATCGCAAACAACCAAG 814
Query 822 CGTT-TATCACGCTCAGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAAC 880
|||| | | ||||| ||||||||||| || || |||||||| ||||||||||| ||||
Sbjct 815 CGTTCT-TAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGACCATCTCAAAG 873
Query 881 TCGGCGAACAAGGTTTACTTGAGCTC-AGACGATCTTTTGCTTAACCTACA 930
||||| || ||||||||||||||||| | ||||||| ||||||||||||||
Sbjct 874 TCGGCAAATAAGGTTTACTTGAGCTCTA-ACGATCTATTGCTTAACCTACA 923
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44222583720
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5