BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28510.1 Length=1185 Score E Sequences producing significant alignments: (Bits) Value Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1 1570 0.0 Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 767 0.0 > Ahg491917 jgi|Araly1|491917|fgenesh2_kg.7__1350__AT4G28510.1 Length=1016 Score = 1570 bits (850), Expect = 0.0 Identities = 943/988 (95%), Gaps = 6/988 (1%) Strand=Plus/Plus Query 2 CTCCAATAGAAGTCTGAGCTTAAACCCTAAACCCCTTTCTCCACGATCTTCCTTTTCCTC 61 |||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||| || Sbjct 1 CTCCAATAGAAGTCAGAGCTTAAACCCTAAACCCCTTACTCCACGATCTTCCTCTTCATC 60 Query 62 TCTCTGCGACTTGAAGCAAAGTTTCCAG-AAAA-AGA-G-A--TGAACAACGTCAAAGTT 115 |||||| ||||||||||||||||| ||| |||| ||| | | ||||||||||||||||| Sbjct 61 TCTCTGTGACTTGAAGCAAAGTTTTCAGAAAAAGAGATGAATTTGAACAACGTCAAAGTT 120 Query 116 CCAAAGATACCAGGTGGTGGTGCCATTTCGACGTTGCTTAAGGTTGGGATTATTGGTGGG 175 || ||| | ||||||||||||||||||||| ||||||||||| | ||||||||||||||| Sbjct 121 CCGAAGGTGCCAGGTGGTGGTGCCATTTCGGCGTTGCTTAAGATCGGGATTATTGGTGGG 180 Query 176 CTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 235 ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 181 CTTGGTCTCTACGGTGCTACACACAGTCTCTACAATGTTGAAGGAGGACATCGAGCCATC 240 Query 236 ATGTTCAATCGTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 295 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 241 ATGTTCAATCGTTTAATCGGTATTAAAGATAAGGTTTACCCTGAGGGTACACACCTTATG 300 Query 296 ATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGACCTTACCTTGTTGAG 355 ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 301 GTTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGCGCTCGACCTTACCTTGTTGAG 360 Query 356 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAGGGTTCTCACACGT 415 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| Sbjct 361 AGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTCAGGGTTCTCACGCGT 420 Query 416 CCCATGGCAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGAACTACAGCGAGAGA 475 |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 421 CCCATGGCAGACCAGTTACCTGAAATCTACAGAACCCTTGGTGAGAACTACAGCGAGAGA 480 Query 476 GTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 535 ||||| |||||||||||| | |||||| |||||||||||||||||||||||||||||||| Sbjct 481 GTTCTGCCTTCTATAATCCATGAGACTCTGAAAGCTGTGGTTGCTCAGTACAATGCAAGC 540 Query 536 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGAACGA 595 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 541 CAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGATTCTGACTGCACGA 600 Query 596 GCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACCTGACATTCGGGAAG 655 |||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| Sbjct 601 GCAGCAAACTTCAACGTTGCGCTTGACGATGTGTCCATCACGACCCTGACATTCGGGAAG 660 Query 656 GAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 715 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 661 GAGTTCACAGCTGCCATTGAAGCCAAGCAGGTGGCGGCTCAAGAGGCTGAGCGGGCTAAG 720 Query 716 TTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCCCAGGGAGAA 775 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 721 TTCATCGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCCGCGCACAGGGAGAA 780 Query 776 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 835 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 781 GCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAGCGTTTATCACGCTC 840 Query 836 AGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCGGCGAACAAGGTT 895 |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 841 AGGAAGATAGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAACTCTGCGAACAAGGTG 900 Query 896 TACTTGAGCTCAGACGATCTTTTGCTTAACCTACAAGGGATGAATTTGGATGTTGATGCA 955 |||||||||||||||||||| |||||||||||||||| ||||||||||||||| |||||| Sbjct 901 TACTTGAGCTCAGACGATCTGTTGCTTAACCTACAAGAGATGAATTTGGATGTCGATGCA 960 Query 956 AAGAACTAGAGAGGTTTCTTAAGTAAAA 983 ||||| |||||| ||||||||||||||| Sbjct 961 AAGAAGTAGAGATGTTTCTTAAGTAAAA 988 > Ahg480882 jgi|Araly1|480882|fgenesh2_kg.3__3583__AT2G20530.1 Length=1113 Score = 767 bits (415), Expect = 0.0 Identities = 654/771 (85%), Gaps = 10/771 (1%) Strand=Plus/Plus Query 165 TTATTGGTGGGCTTGGTCTCTATGGTGCTACGCACAGTCTCTACAATGTTGAAGGAGGAC 224 ||||||||||||| ||||| || || ||||| ||| |||||||||||| || ||||| | Sbjct 158 TTATTGGTGGGCTCGGTCTTTACGGCGCTACACACTCTCTCTACAATGTCGATGGAGGTC 217 Query 225 ATCGAGCCATCATGTTCAATC-GTTTAGTCGGTATTAAAGATAAGGTTTACCCTGAGGGT 283 ||||||||||| | || || | | || || ||||| ||||| ||||| |||||||||||| Sbjct 218 ATCGAGCCATCGTCTTTAACCGGCTT-GTTGGTATCAAAGACAAGGTCTACCCTGAGGGT 276 Query 284 ACACACCTTATGATTCCTTGGTTTGAAAGGCCGGTCATCTATGACGTTCGTGCTCGA-CC 342 || |||||||||||||| ||||| |||||||| ||||||||||||||||||| | || Sbjct 277 ACTCACCTTATGATTCCGTGGTTCGAAAGGCCAATCATCTATGACGTTCGTGC-AAAGCC 335 Query 343 TTACCTTGTTGAGAGTACATCCGGAAGCCGTGATCTTCAGATGGTGAAAATTGGGCTTAG 402 ||| || ||||||||||||||||| ||||||||||| |||||||| || ||||||||| | Sbjct 336 TTATCTAGTTGAGAGTACATCCGGGAGCCGTGATCTCCAGATGGTTAAGATTGGGCTTCG 395 Query 403 GGTTCTCACACGTCCCATGG-CAGACCAGTTACCTGAAATCTACAGAAGCCTTGGTGAGA 461 |||||| || ||||| |||| || |||| |||| || | ||| | ||||||||||| Sbjct 396 GGTTCTTACCCGTCCTATGGCCA-ACCAACTACCAGAGGTATACCGGTCCCTTGGTGAGA 454 Query 462 ACTACAGCGAGAGAGTTCTACCTTCTATAATCAACGAGACTTTGAAAGCTGTGGTTGCTC 521 | ||| ||||||||||| | |||||||| ||| | ||||| ||||||||||||||||||| Sbjct 455 ATTACCGCGAGAGAGTTTTGCCTTCTATCATCCATGAGACCTTGAAAGCTGTGGTTGCTC 514 Query 522 AGTACAATGCAAGCCAGCTTATTACTCAGAGAGAGGCGGTCAGTAGGGAGATCAGGAAGA 581 |||||||||| |||||||||||||| ||||||||| |||| ||||| || |||||||| | Sbjct 515 AGTACAATGCGAGCCAGCTTATTACCCAGAGAGAGTCGGTGAGTAGAGAAATCAGGAAAA 574 Query 582 TTCTGACTGAACGAGCAGCAAACTTCAATGTTGCGCTTGACGATGTGTCCATCACAAACC 641 | || |||| |||||| ||||||||| | |||| || || ||||||||||||||| | Sbjct 575 TCCTAACTGCACGAGCCGCAAACTTCTACATTGCACTGGATGATGTGTCCATCACAGGCT 634 Query 642 TGACATTCGGGAAGGAGTTCACAGCTGCCATTGAAGCAAAGCAGGTGGCGGCTCAAGAGG 701 ||||||| || ||||||||||| || ||||| |||| ||||||||| || |||||||||| Sbjct 635 TGACATTTGGAAAGGAGTTCACGGCAGCCATAGAAGGAAAGCAGGTCGCAGCTCAAGAGG 694 Query 702 CTGAGCGGGCTAAGTTCATTGTTGAGAAGGCCGAACAAGACAAGAGAAGTGCTGTTATCC 761 | |||||||||||||||||||| || || || ||||| |||||| ||||||| ||||| | Sbjct 695 CCGAGCGGGCTAAGTTCATTGTGGAAAAAGCTGAACAGGACAAGCGAAGTGCCGTTATTC 754 Query 762 GCGCCCAGGGAGAAGCCAAGAGTGCTCAGCTCATTGGTCAAGCAATTGCAAACAACCAAG 821 |||| |||||||||||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 755 GCGCTGAGGGAGAAGCCAAGAGTGCTCAGCTCATAGGTCAAGCAATCGCAAACAACCAAG 814 Query 822 CGTT-TATCACGCTCAGGAAGATCGAGGCTGCAAGAGAGATTGCACAGACCATAGCAAAC 880 |||| | | ||||| ||||||||||| || || |||||||| ||||||||||| |||| Sbjct 815 CGTTCT-TAACGCTGAGGAAGATCGAAGCAGCTAGAGAGATCGCACAGACCATCTCAAAG 873 Query 881 TCGGCGAACAAGGTTTACTTGAGCTC-AGACGATCTTTTGCTTAACCTACA 930 ||||| || ||||||||||||||||| | ||||||| |||||||||||||| Sbjct 874 TCGGCAAATAAGGTTTACTTGAGCTCTA-ACGATCTATTGCTTAACCTACA 923 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 44222583720 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5