BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28520.1
Length=1794
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491913 jgi|Araly1|491913|fgenesh2_kg.7__1346__AT4G28520.1 2658 0.0
> Ahg491913 jgi|Araly1|491913|fgenesh2_kg.7__1346__AT4G28520.1
Length=1781
Score = 2658 bits (1439), Expect = 0.0
Identities = 1661/1764 (94%), Gaps = 32/1764 (2%)
Strand=Plus/Plus
Query 16 ATCTCTCACAACAAACAAAAAGAAAATGGTTAAGCTCAGCAATCTCCTCGTTGCAACCTT 75
|||||||||||||||| |||||||||||||||||||| |||| |||||||||||||| ||
Sbjct 1 ATCTCTCACAACAAACTAAAAGAAAATGGTTAAGCTCGGCAAGCTCCTCGTTGCAACGTT 60
Query 76 CGGGGTTCTCCTCGTCCTTAACGGCTGCCTTGCGAGGCAGTCACTTGGGGTTCCTCCTCA 135
||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 61 CGGGGTTCTCCTCGTCCTTAATGGCTGCCTTGCGAGGCAGTCGCTTGGGGTTCCTCCTCA 120
Query 136 GCTACAGAACGAGTGTAACCTCGACAACCTAGATGTTCTCCAAGCCACCGAAACTATCAA 195
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 121 GCTACAGAACGAGTGTAACCTCGACAACCTAGACGTTCTCCAAGCCACCGAAACTATCAA 180
Query 196 GAGTGAAGCCGGTCAGATCGAGTACTGGGACCACAACCACCCTCAGCTCCGATGTGTTGG 255
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 GAGTGAAGCCGGTCAGATCGAGTACTGGGACCACAACAACCCTCAGCTCCGATGTGTTGG 240
Query 256 TGTTTCCGTTGCTCGTTATGTAATTGAACAAGGCGGTCTTTACTTGCCCACCTTCTTCAC 315
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 241 TGTTTCTGTCGCTCGTTATGTAATCGAACAAGGCGGTCTTTACTTGCCCACCTTCTTCAC 300
Query 316 TTCCCCAAAAATTTCCTACGTCGTTCAAGGAACGGGTATCAGCGGAAGAGTGGTCCCTGG 375
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 301 TTCCCCAAAAATTTCCTACGTCGTTCAAGGAAGGGGTATTAGCGGAAGAGTGGTCCCTGG 360
Query 376 ATGTGCCGAGACCTTCATGGACTCGCAGCCGAT-GCAAGGACA--A----CAACAAGGCC 428
|||||| |||||||||||||||||||| || || | ||||||| | ||||||||||
Sbjct 361 ATGTGCGGAGACCTTCATGGACTCGCAACC-ATGGGAAGGACAGCAGGGGCAACAAGGCC 419
Query 429 AACCATGGcaaggacga-cagggacaacaaggccaaccatgggaagg--a-cagggacaa 484
|||||||| |||||| | ||||||||||||||||||||||||||||| | |||||||||
Sbjct 420 AACCATGGGAAGGAC-AGCAGGGACAACAAGGCCAACCATGGGAAGGACAGCAGGGACAA 478
Query 485 cagggacaa-ca-aggaa-gacaaggccaaccatgggaaggacagggacaacagggacaa 541
|| || ||| || |||| |||| || ||| || || | |||||| ||||||||||||
Sbjct 479 CAAGGCCAACCATGGGAAGGACAGGGACAA-CA-AGG-ACAACAGGGCCAACAGGGACAA 535
Query 542 caaggacgacagggacaacaaggccaaccatgggaaggacagggacagcagggacaacaa 601
||||||| |||||| ||||| || ||| || || | ||||||||||||||||||||||
Sbjct 536 CAAGGACAACAGGGCCAACAGGGACAA-CA-AGG-ACAACAGGGACAGCAGGGACAACAA 592
Query 602 GGGTTCCGTGACATGCACCAGAAGGTGGAACATGTGAGACGCGGAGACGTCTTTGCCAAC 661
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 593 GGGTTCCGTGACATGCACCAGAAGGTGGAACATGTCAGACGCGGAGACGTATTTGCCAAC 652
Query 662 ACTCCAGGCTCTGCCCACTGGATCTACAACTCAGGAGAACAGCCACTTGTCATCATCGCT 721
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 653 ACTCCTGGCTCTGCCCACTGGATCTACAACTCCGGAGAACAGCCTCTTGTCATCATCGCT 712
Query 722 CTTCTCGACATCGCCAACTACCAAAACCAACTCGACCGCAACCCTAGAGTGTTCCATTTG 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 713 CTTCTCGACATCGCCAACTACCAAAACCAACTCGACCGCAACCCTAGAGTGTTCCGTTTA 772
Query 782 GCCGGAAACAACCAGCAGGGAGGCTTTGGCGGTTCACAGCAACAACAAGAACAGAAAAAC 841
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 773 GCCGGAAACAACCAACAGGGCGGCTTTGGCGGTTCACAGCAACAACAAGAACAGAAAAAC 832
Query 842 TTGTGGAGCGGGTTCGACGCACAGGTCATAGCTCAAGCATTGAAAATTGACGTTCAGTTG 901
|||||||||||||||||||||||||||||||||||||||||||||| ||||| | |||
Sbjct 833 ATGTGGAGCGGGTTCGACGCACAGGTCATAGCTCAAGCATTGAAAATCAACGTTAAATTG 892
Query 902 GCTCAGCAGCTTCAGAACCAACAAGACAGCAGAGGAAACATCGTTCGTGTTAAGGGACCT 961
|||||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 893 GCTCAGGAGCTTCAAAACCAACAAGACAGCCGAGGAAACATCGTTCGTGTTAAGGGACCT 952
Query 962 TTCCAGGTCGTGAGGCCACCTCTAAGACAGCCCTACGAGAGCGAGGAGTGGAGACACCCA 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 953 TTCCAGGTCGTGAGGCCACCTCTAAGACAGCCCTACGAGAGCGAGGAGTGGAGACACCCA 1012
Query 1022 CGTAGCCCACAGGGCAACGGCCTTGAGGAGACTATCTGCAGCATGAGGTCCCACGAGAAC 1081
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 CGTAGCCCACAGGGTAACGGCCTTGAGGAGACTATCTGCAGCATGAGGTCCCACGAGAAC 1072
Query 1082 ATTGACGACCCTGCTCGTGCTGACGTGTACAAGCCCAGCCTAGGTCGCGTGACCAGCGTC 1141
||||||||||||||||||||||||||||||||||||| ||||||||| || || ||||||
Sbjct 1073 ATTGACGACCCTGCTCGTGCTGACGTGTACAAGCCCAACCTAGGTCGTGTAACTAGCGTC 1132
Query 1142 AACAGCTATACCTTGCCCATCTTGGAGTATGTCAGGCTCAGTGCCACTCGTGGCGTTCTC 1201
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1133 AACAGCTATACCTTGCCCATCTTGGAGTATGTCAGGCTCAGCGCCACTCGTGGCGTTATC 1192
Query 1202 CAGGGTAATGCGATGGTGCTTCCTAAATACAACATGAACGCTAACGAGATCTTGTACTGC 1261
|||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1193 CAGGGTAACGCGATGGTGCTTCCGAAATACAACATGAACGCTAACGAGATCTTGTACTGC 1252
Query 1262 ACTGGAGGACAAGGAAGGATCCAAGTGGTCAACGACAACGGACAGAACGTGTTGGACCAA 1321
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 ACTGGAGGACAAGGAAGAATCCAAGTGGTCAACGACAACGGACAGAACGTGTTGGACCAG 1312
Query 1322 CAGGTGCAGAAGGGACAGCTCGTGGTCATCCCACAAGGGTTCGCATACGTTGTCCAGTCC 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1313 CAGGTGCAGAAGGGACAGCTCGTGGTCATCCCACAAGGGTTCGCATACGTTGTCCAGTCC 1372
Query 1382 CACGGAAACAAGTTCGAGTGGATCTCTTTCAAAACTAATGAAAACGCAATGATCAGCACT 1441
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1373 CACGGAAACAAGTTCGAGTGGATCTCTTTCAAGACTAATGAAAACGCGATGATCAGCACT 1432
Query 1442 TTGGCGGGTAGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTC 1501
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1433 TTGGCGGGTCGAACCTCGCTCTTGAGGGCATTGCCATTGGAGGTCATATCAAATGGTTTC 1492
Query 1502 CAGATCTCTCCCGAGGAAGCTAGGAAGATCAAGTTCAACACACTTGAGACCACTTTGACC 1561
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1493 CAGATCTCTCCCGAGGAAGCTAGGAAGATCAAGTTCAACACATTTGAGACCACTTTGACT 1552
Query 1562 CGCGC-TGCCGGTAGGCAACAACAACAGTTGATCGAGGAGATTGTCGAGGCTTAAATCAA 1620
||||| | |||||||||||||||| ||||||||||||||| |||||||||||| |||
Sbjct 1553 CGCGCCT-CCGGTAGGCAACAACA---GTTGATCGAGGAGATCGTCGAGGCTTAAG-CAA 1607
Query 1621 AACGTTTTTCTTTTTCTTAATAAAGTATGGTCAGTTTGTAATCACGTCCCTTTACCTTTA 1680
||||||||| || ||||||||||||||||||||||||||||| |||| | ||||||||
Sbjct 1608 AACGTTTTT-TT---CTTAATAAAGTATGGTCAGTTTGTAATCATGTCCGTCTACCTTTA 1663
Query 1681 ACGTACGTGTAAAATATGTGTCTGCGGCACCTCACTTGTAATAACACTTTCTTCTCATAA 1740
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 ACGTACGTGTAAAATATGTGTCTGCGGCACCTCACTTGTAATAACACTTTCTTCTCATAA 1723
Query 1741 ATAAAAGGGAAGTTTCGAGTTACA 1764
||||||||||||||||||||||||
Sbjct 1724 ATAAAAGGGAAGTTTCGAGTTACA 1747
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67343553160
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5