BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28530.1
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491912 jgi|Araly1|491912|fgenesh2_kg.7__1345__AT4G28530.1 1999 0.0
> Ahg491912 jgi|Araly1|491912|fgenesh2_kg.7__1345__AT4G28530.1
Length=1307
Score = 1999 bits (1082), Expect = 0.0
Identities = 1249/1325 (94%), Gaps = 29/1325 (2%)
Strand=Plus/Plus
Query 155 CTAAAGATTTCTTCACGTAATGGGTTTGAAAGATATTGGGTCCAAATTGCCACCGGGGTT 214
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CTAAAGATTTATCCACGTAATGGGTTTGAAAGATATTGGGTCCAAATTGCCACCGGGGTT 60
Query 215 TCGATTTCATCCAAGTGATGAAGAGTTGGTTTGTCATTATCTTTGCAACAAGATTAGGGC 274
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 61 TCGATTTCATCCAAGTGATGAAGAGTTGGTATGTCATTATCTTTGCAACAAGATTAGGGT 120
Query 275 CAAATCTGATCATGGtgatgttgatgatgatgatgatgatgttgatgaAGCTTTGAAGGG 334
|||||||||| ||||||||||||| | |||||||| | ||||||||||||||||||||
Sbjct 121 CAAATCTGATTATGGTGATGTTGA-G--GATGATGA--A-GTTGATGAAGCTTTGAAGGG 174
Query 335 TTCTACTGATCTTGTGGAGATTGACTTGCATATCTGTGAGCCATGGGAGCTTCCTGATGT 394
|||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 175 CTCTACTGATCTTGTTGAGATTGACTTGCATATTTGTGAGCCATGGGAGCTTCCTGATGT 234
Query 395 GGCAAAGTTAAACGCAAAGGAATGGTACTTCTTCAGTTTCCGTGATCGAAAGTATGCTAC 454
|||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||| ||
Sbjct 235 GGCAAAGTTAAACGCAAAGGAATGGTACTTCTTCAGTTTCCGCGATAGAAAATATGCGAC 294
Query 455 TGGATATCGCACGAACAGAGCGACAGTAAGCGGATACTGGAAAGCAACAGGAAAAGATCG 514
|||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 295 TGGATATCGCACAAACAGAGCGACAATAAGCGGATACTGGAAAGCAACAGGAAAAGATCG 354
Query 515 AACGGTGATGGATCCACGTACAAGGCAATTGGTAGGGATGAGAAAAACACTAGTGTTCTA 574
|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 355 AACGGTTATGGATCCACGTACAAGGCAATTGGTAGGGATGAGAAAAACACTGGTTTTCTA 414
Query 575 CAGAAACAGAGCACCAAATGGGATCAAAACTACTTGGATCATGCACGAGTTCCGTCTTGA 634
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 415 CAGGAACAGAGCACCAAATGGGATCAAAACTACTTGGATCATGCACGAGTTCCGTCTTGA 474
Query 635 GTGTCCTAACATCCCACCTAAGGAAGACTGGGTCTTGTGCAGAGTGTTCAACAAAGGCAG 694
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 475 GTGTCCTAACATCCCACCTAAGGAAGACTGGGTCTTGTGCAGAGTGTTCAACAAAGGCAG 534
Query 695 AGACTCATCGCTACAAGACAATAATTATTATAACAATGATAATCAGACGCAAAGGCTTGA 754
|||| |||| |||||||||||||||||| | | || ||||||||||||||||||||||||
Sbjct 535 AGACCCATCACTACAAGACAATAATTAT-A-A-CACTGATAATCAGACGCAAAGGCTTGA 591
Query 755 AGTTAATGACGCTCCGGATCTTAATTACAACAATCAGTTGCCACCTTTGCTATCATCCCC 814
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 592 AGTTAATGACGCTCCGGATCTTAATTACAACAATCAGTTACCACCTTTGCTATCATCCCC 651
Query 815 TCCT-CATAATCATCAACATGAGAAGATGAAAATCCAAGTTTGTGATCAGTGGGAGCAGC 873
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 652 TC-TACATAATCATCAACATGAGAAGATGAAAATCCAAGTTTGTGATCAGTGGGAGCAGC 710
Query 874 TAATGAAGCAGCCTTCAAGGACCACCGGCCACCCCTATCATCACCATTGTCATCATCAAA 933
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct 711 TAATGAAGCAGCCTTCAAGGACCACCGACCACCCCTATCATCACCATTGTCATCATCACA 770
Query 934 CCATAGCATGTGGTTGGGAGCAGATGATGATCGGTTCGCTGTCATCACCTTCGAGTCATG 993
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 771 CCATATCATGTGGTTGGGAGCAGATGATGATCGGTTCGCTGTCATCATCTTCGAGTCATG 830
Query 994 GCCCTGATCACGAGTCCTTGCTAAATTTGCTTTACGTCGACAATAACAACAGTGTCAACA 1053
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 831 GCCCTGATCACGAGTCCTTGCTAAATTTGCTTTACGTCAACAATAACAACAGTGTCAACA 890
Query 1054 TCAGTGGTGATCATCATCAGAATTATGAGAAGATTTTGTTGTCATCACTAGACATGACGA 1113
||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 891 TCAGTGGTGATCATCATCAGAATTATGAGAAGATTTTTTTGTCATCACCAGACATGACGA 950
Query 1114 GTTTGGATCACGACAAGACATGTATGGGATCATCATCGGATGGTGGTATGGTCTCTGATC 1173
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 951 GTTTGGATCACGACAAGACATGTATGGGCTCATCATCGGATGGTGGTATGGTCTCTGATC 1010
Query 1174 TTCACATGGAATGTGGTGGATTGAGTTTTGAGACCGAAAATATCCTCGCTTTCCAATGAA 1233
||||||||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||
Sbjct 1011 TTCACATGGAATGTGGTGGCTTGAGTTTTGAGACAGAAAATCTCCTCACTTTCCAATGAA 1070
Query 1234 CATAATTCAAGGGGTTCGCCAATTTGTTGATTCGTGAATTATACAAACATTTT---ATCT 1290
|||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 1071 CATAATTCAAGGGGTTCGCCGATTTGTTGATTCGTGAAATATACAAATATTTTTTTATCT 1130
Query 1291 ATAGATTTATCACATTATCAAACATGTAAGTTGTGTGGCATTTGGGTATAGGGTTTGTGT 1350
|||| ||||||||||||| ||||||||||||||||||||||||||||||||| |||||||
Sbjct 1131 ATAGCTTTATCACATTATTAAACATGTAAGTTGTGTGGCATTTGGGTATAGGATTTGTGT 1190
Query 1351 GATTCTAGG-TTTT-TAGGACGATGTATGTTGTTATATTTAGCGTGTTTTTAGGATTTAT 1408
|||| |||| |||| ||||| | | ||| | |||||||| |||||||||| |||| |
Sbjct 1191 GATTTTAGGGTTTTCTAGGAGG-T-TAT-T----ATATTTAGTGTGTTTTTAG-ATTTTT 1242
Query 1409 TC-T----CATTTTAAAATTATATGAAAACCCATTACTATGAATACAATTAGTTTTCTTT 1463
|| | ||||| ||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 1243 TCATTTTTCATTTAAAAATTATATGTAAACCCATTACTATGAATATAATTAGTTTTCTTT 1302
Query 1464 GTTGT 1468
|||||
Sbjct 1303 GTTGT 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54926133290
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5