BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28540.1
Length=1960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491910 jgi|Araly1|491910|fgenesh2_kg.7__1343__AT4G28540.1 2861 0.0
> Ahg491910 jgi|Araly1|491910|fgenesh2_kg.7__1343__AT4G28540.1
Length=1850
Score = 2861 bits (1549), Expect = 0.0
Identities = 1769/1872 (94%), Gaps = 27/1872 (1%)
Strand=Plus/Plus
Query 27 TTTTTGATTTGGGGAATGTGACAAAGCAATCTGGGTTGTCTGATTATTTCCAATGACTTC 86
||||||||||||||||||||||||| ||||||||||||||||||||||| | |||||||
Sbjct 1 TTTTTGATTTGGGGAATGTGACAAATCAATCTGGGTTGTCTGATTATTTTCTATGACTTT 60
Query 87 CTTCTCTGTCTGATTCGTTTGTTTCGGCGATTCAACTCTTCTTCAACGCCCTGAGAGTCA 146
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 61 CTTCTCTGTCTGATTCGTTTGTTTCGGCGATTCAACTCTTCTTCAACGCCCTG-G-GTCA 118
Query 147 CGCACGAGAATTGGATTGATGGTT-TTTCACACGCAGGAGAGGCGATTCGTTGTCTTCTT 205
||||||| ||||||||||| ||| |||| ||||||||||||||||||| || | ||||
Sbjct 119 CGCACGA-CATTGGATTGAT-GTTATTTCCCACGCAGGAGAGGCGATTC-TT-T-GTCTT 173
Query 206 CTTGTCCCGTTGACCTGTTTCGATCTCAGATGGTGATTATGCAGCAGC-TGATTCTAAAT 264
|||||||||||||||||||||||||| ||||||||||||||||||| | || |||| |||
Sbjct 174 CTTGTCCCGTTGACCTGTTTCGATCTAAGATGGTGATTATGCAGCA-CTTGCTTCTTAAT 232
Query 265 TAGGGCATTTAAATCCGCCTTCCAGGTGAATTTTTGAAAAGTAATTAAAGGGTGTTCTTG 324
|||||||||||||||||||||||||||| | |||| ||||| ||| | |||
Sbjct 233 TAGGGCATTTAAATCCGCCTTCCAGGTG-A-TTTT-CAAAGT-ATT--A--------TTG 278
Query 325 AATGGACTTGAAAATGGATAATGTTATTGGGGGAAAGTTTAAACTTGGTCGGAAGATCGG 384
|||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||
Sbjct 279 AATGGACTTGAAAATGGATAATGTAATTGGGGGCAAGTTTAAACTTGGTCGCAAGATCGG 338
Query 385 TGGTGGCTCTTTTGGAGAACTTTTTCTTGCCGTAAGTTTGCAAACCGGAGAGGAAGCAGC 444
||||||||||||||||| |||||||||||||||||| |||||||||||||||||| |||
Sbjct 339 CGGTGGCTCTTTTGGAGAGCTTTTTCTTGCCGTAAGTCTGCAAACCGGAGAGGAAGTAGC 398
Query 445 TGTTAAGCTGGAGCCTGCGAAAACTAAGCATCCCCAACTTCATTATGAGTCGAAGATATA 504
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 399 TGTTAAGCTGGAGCCTGCGAAAACTAAGCATCCTCAACTTCATTATGAGTCGAAGATATA 458
Query 505 CATGCTTCTACAAGGAGGAAGTGGCATCCCCAGCCTTAAGTGGTTTGGGGTTCAGGGAGA 564
||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 459 CATGCTTCTACAAGGAGGAAGTGGCATCCCCAGTCTCAAGTGGTTTGGGGTTCAGGGAGA 518
Query 565 CTACAATGCGATGGTCATTGATCTGCTTGGGCCGAGTTTGGAAGACTTGTTCAACTACTG 624
|||||||||||||||||||||||| || ||||| |||||||| |||||||||||||| ||
Sbjct 519 CTACAATGCGATGGTCATTGATCTACTCGGGCCCAGTTTGGAGGACTTGTTCAACTATTG 578
Query 625 CAATAGGAGGCTTACTTTGAAGGCAGTTTTGATGCTTGCAGATCAACTGATTAGCAGAGT 684
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 579 TAATAGGAGGCTTACTTTGAAAGCAGTTTTGATGCTTGCAGATCAACTGATTAGCAGAGT 638
Query 685 TGAATATATGCATTCAAGGGGGTTTCTTCACCGTGACATCAAACCTGACAATTTCTTGAT 744
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 639 TGAATATATGCATTCAAGGGGATTTCTTCACCGTGACATAAAACCTGACAATTTCTTGAT 698
Query 745 GGGACTTGGTCGCAAAGCAAACCAGGTGTATATCATTGATTTTGGGCTTGCAAAGAAGTA 804
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 699 GGGACTTGGTCGCAAAGCAAACCAGGTGTATATCATTGATTTTGGGCTTGCAAAGAAGTA 758
Query 805 TAGGGATCTCCAAACACATAGGCATATCCCCTATAGAGAAAACAAGAACCTTACGGGCAC 864
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 759 TAGGGATCTCCAAACACATAGGCACATCCCCTATAGAGAAAACAAGAACCTTACGGGCAC 818
Query 865 AGCTCGGTATGCTAGTGTCAACACTCACCTAGGAGTTGAGCAAAGTAGGAGGGATGATCT 924
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 819 AGCTCGGTATGCTAGTGTCAACACTCACCTTGGAGTTGAGCAAAGTAGGAGGGATGATCT 878
Query 925 GGAGTCTCTTGGTTACGTACTCATGTATTTCCTGAGAGGAAGCTTACCGTGGCAGGGACT 984
|||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||
Sbjct 879 GGAGTCTCTTGGTTACGTGCTCATGTATTTCCTCAGAGGAAGCCTACCGTGGCAGGGACT 938
Query 985 AAAAGCTGGCACAAAGAAGCAAAAGTATGACAGAATTAGCGAGAAGAAAGTATCAACTCC 1044
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 939 AAAAGCTGGCACGAAGAAGCAGAAGTATGACAGAATTAGCGAGAAGAAAGTATCAACTCC 998
Query 1045 TATAGAGGTCTTGTGCAAGTCATATCCACCCGAATTCGTATCATACTTTCAATACTGCAG 1104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 999 TATAGAGGTCTTGTGCAAGTCATATCCACCCGAATTCGTATCATACTTTCAATACTGCAG 1058
Query 1105 ATCTCTGCGATTCGAAGACAAACCAGACTACTCATATCTAAAGAGACTTTTCCGAGACTT 1164
|||| ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1059 ATCTTTGCGATTTGAAGACAAACCAGACTACTCATATCTAAAGAGGCTTTTCAGAGACTT 1118
Query 1165 GTTTATCCGTGAAGGTTATCAGTTTGATTATGTATTCGACTGGACTGCATTGAAACACCC 1224
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1119 GTTTATCCGTGAAGGTTATCAGTTTGACTATGTATTCGACTGGACTGCATTGAAACACCC 1178
Query 1225 TCAGAGTAGTGCCAGGTCCCATTCCAGTACACATGAAAGGCATCGTACCGGTAAACCAGG 1284
||||||||||||||| ||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1179 TCAGAGTAGTGCCAGATCCCATTCCAGCACCCATGAAAGGCATCGTACCGGTAAACCAGG 1238
Query 1285 GATGGGTGCGGGACCGTCTGCTGAAAAACCTGAAAGGATTTCAGTAGGGAACATCCGCGA 1344
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1239 GATGGCTGCGGGACCGTCTGCTGAAAAACCTGAAAGGATTTCAGTAGGGAACATCCGTGA 1298
Query 1345 TAAATTCTCAGGTGCGGTCGAAGCATTTGCGAGAAGGAACGTTAGAGGACCCAGTCCCCA 1404
||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1299 TAAATTCTCAGGTGCAGTTGAAGCATTCGCGAGAAGGAATGTTAGAGGACCCAGTCCCCA 1358
Query 1405 TCAAAACCATACCAGACATCGAACTCTTGACGAAATTCCTTCAATGAAACCTGCTGTGAA 1464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1359 TCAAAACCATACCAGACATCGAACTCTTGACGAAATTCCTTCAATGAAACCTGCTGTGAA 1418
Query 1465 TATGGTATCTGAGAAAGGAAGAAACACTTCCAGATACGGCAGTGCTTCGAGGAGAGCAGT 1524
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 1419 TATGGTATCTGAGAAAGGAAGAAACACTTCCAGATACGGCAGTGCTTCAAGGAGAGCGGT 1478
Query 1525 AGCCTCAGGAAGTAGACCAAGCTCATCAGGTGAACAAAGGGAGAGCCGGGACTCGAGCCG 1584
||||||||||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||
Sbjct 1479 AGCCTCAGGAAGTAGGCCAAGTTCATCTGGTGAACAAAGAGAGAGCCGGGACTCGAGCCG 1538
Query 1585 CGTAGCCTCAAGCGGTGGCGGTGTCCGACCATCAGTCTTCCAAAGAACCCAAGCAGCAGC 1644
|| |||||||||||| ||||| |||||||||||||||| || ||||| |||||||||||
Sbjct 1539 TGTGGCCTCAAGCGGTAGCGGTATCCGACCATCAGTCTTTCAGAGAACTCAAGCAGCAGC 1598
Query 1645 TGCTGTGAGTGGATACGAGTCAAAGACAGCATCTGCCTTTAACCGCGACCGAGTAGCCGC 1704
||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||
Sbjct 1599 TGCTGTGAGTGGATATGAGTCAAAGACAGCCTCTGCCTTTAACCGCGACAGAGTAGCTGC 1658
Query 1705 TTCAAGAACAGCACGAGACGAGGCTCTCAGAAGCTTCGAGCTTCTTTCGATCCGCAAATG 1764
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1659 TTCAAGGACAGCACGAGACGAGGCTCTCAGAAGCTTCGAGCTTCTTTCGATCCGCAAATG 1718
Query 1765 AAGCCTTCATCAATTGGCTCTTTGCTGTAAATTGGATTCTTCTTTACATATGTTGTTTGG 1824
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1719 AAGCCTTCATCAATGGGCTCTTTGCTGTAAATTGGATTCTTCTTTACATATGTTATTTGG 1778
Query 1825 TCCTTTGTTTCCACGAAACTCCCAATTTTTCATGTATTATCAA-AT-T-CTCTGGATTTT 1881
||||| ||| |||||||||||||||||||||||||||| ||| || | |||||||||||
Sbjct 1779 TCCTTCGTTCCCACGAAACTCCCAATTTTTCATGTATTGTCATCATCTTCTCTGGATTTT 1838
Query 1882 GTATCAATTTTT 1893
||||||| ||||
Sbjct 1839 GTATCAAATTTT 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73666533830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5