BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28550.1
Length=1685
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945175 jgi|Araly1|945175|scaffold_701404.1 2119 0.0
Ahg931910 jgi|Araly1|931910|scaffold_304367.1 1286 0.0
> Ahg945175 jgi|Araly1|945175|scaffold_701404.1
Length=1315
Score = 2119 bits (1147), Expect = 0.0
Identities = 1243/1291 (96%), Gaps = 0/1291 (0%)
Strand=Plus/Plus
Query 111 aaaaaaaaGTGAAGCTTTGTATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 170
||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAGAAAAGTGAAGCTTTGAATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAG 60
Query 171 ATTTGCAAGGTTTCTATCCAGTTAGAGAAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 230
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 ATTTGCAAGGTTTCTATCCAGTTAGATCAGAATGTGTAGCAGATGTTCCCAGGACTCGAT 120
Query 231 TTAAATCAAGGGCTGGTAAAACTCTTAGTGCTAGAAAATGGCACGCTGCGTTTACTGGAG 290
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 121 TTAAATCAAGGGCTGGTAAAACTCTAAGTGCTAGAAAATGGCACGCTGCGTTTACTGAAG 180
Query 291 ATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCGAGGGGGAATTCATCCCT 350
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 181 ATGGACATTTGGATATGGAAAGAGTTCTTCGCCGTATACAGCAAGGGGGAATTCATCCCT 240
Query 351 CAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGCTTACGATCCAGACAGCACTTTTG 410
|||||||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||
Sbjct 241 CAATCAAAGGAGAGGTTTGGGAGTTTTTGTTAGGAGGTTACGATCCGGACAGCACGTTTG 300
Query 411 AAGAACGGAACAAGTTGAGGAATCACAGAAGGGAGCAGTATTATGCTTGGAAAGAAGAAT 470
|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AAGAACGGAATAAGTTGAGGAATCACAGAAGGGAGCAGTATTATGGTTGGAAAGAAGAAT 360
Query 471 GTAAGAATATGGTTCCTCTTGTTGGTAGCGGAAAGTTTGTCACGATGGCAGTTGTTGCGG 530
|| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 361 GTCGGAATATGGTTCCTCTTGTTGGTAGCGGCAAGTTTGTCACGATGGCAGTTGTTGCAG 420
Query 531 AAGATGGGCAGCCATTAGAAGAATCCTCAGTAGACAATCAAGAATGGGTTGTGAAAACCG 590
|||||||||||||||||||||||||||||||||| |||||| |||| ||||||||||||
Sbjct 421 AAGATGGGCAGCCATTAGAAGAATCCTCAGTAGAGGATCAAGGATGGCTTGTGAAAACCG 480
Query 591 CTATAACAGACAAGCGTGTGCTCCAGTGGATGCTTGTGTTGAGTCAAATCGGTCTCGATG 650
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 481 CTATAACAGACAAGCGTGTGCTCCAGTGGATGCTTGTCTTGAGTCAAATCGGTCTCGATG 540
Query 651 TTGTTAGAACGGATCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTAT 710
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TGGTTAGAACGGACCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTAT 600
Query 711 GGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAGGGAATGA 770
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 601 GGGATATTCTTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAAGGAATGA 660
Query 771 ACGACATATGTTCCCCCATGATAATCCTACTTGAAGATGAAGCCGACGCTTTCTGGTGCT 830
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 ATGACATATGTTCCCCGATGATAATCCTACTTGAAGATGAAGCCGACGCTTTCTGGTGCT 720
Query 831 TTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACAGCAACATCAATGGGCG 890
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 721 TTGAGCGTGCAATGCGAAGACTAAGAGAAAATTTCAGGACAACGGCGACATCAATGGGCG 780
Query 891 TCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTCCATC 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 781 TCCAGACTCAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTACATC 840
Query 951 AACATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTAT 1010
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 AGCATCTTGAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTAT 900
Query 1011 TGTTCAGAAGAGAGTTTTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTA 1070
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 901 TGTTCAGGAGAGAGTTCTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTA 960
Query 1071 TGGAATACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATGAACAACTCCT 1130
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 961 TGGAGTACAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATAAACAACTCCT 1020
Query 1131 CAGGACAGGATCCGAGGTTACTTAAGCAGTATGGAAAATTTGAGAGAAAATATATAAAGA 1190
||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 1021 CAGGACACGATCCGAGGTTACTCAAGCAGTATGGAAAGTTTGAGAGAAAATATATAAAGA 1080
Query 1191 GTGGCCAGAACGAGCAACACAACACGCTTGCTGTTTTTGTTGTGGCTAGTGTTCTTGAAA 1250
|||||||||||||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct 1081 ATGGCCAGAACGAGCAACACAACACGCTTGCTGTTTTTGTTGTAGCAAGCGTTCTTGAAA 1140
Query 1251 CAAAGAACAAACGTCTCTTGAAGGAAGCTAAAGGCCTAGATGACGTTGTTCAGATATTGG 1310
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1141 CAAAGAACAAACGTCTCTTGAAGGAAGCAAAAGGCCTAGATGACGTTGTTCAGATATTGG 1200
Query 1311 GAGGTATTGCAGGTAATTTGGACGCGAGAAAAGCGTGTAAAGAAGCGTTGAAGATTCATG 1370
| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1201 GCGGTATTGCAGGTAATTTGGACGCGAGAAAAGCATGTAAAGAAGCTTTGAAGATTCATG 1260
Query 1371 AAAAATTCCTGAAAAAGGCTAATAGTAAGCA 1401
||||||||||||| |||||||||| || |||
Sbjct 1261 AAAAATTCCTGAAGAAGGCTAATAATAGGCA 1291
> Ahg931910 jgi|Araly1|931910|scaffold_304367.1
Length=1321
Score = 1286 bits (696), Expect = 0.0
Identities = 1094/1286 (85%), Gaps = 28/1286 (2%)
Strand=Plus/Plus
Query 127 TTGTATGATTTGTTGTGGATTTATGTGGAAATCCGGAGGTGAAGATTTGCAAGGTTTCTA 186
||| ||| |||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 20 TTGAATGTTTTGCTGCGGATTTATGTGGAAATCCGGAGGAGAAGATTTGCAAGGTTTCTA 79
Query 187 TCCAGTTAGAGAAGAATGTGTAGCAGATGTTCCCAGGACTCGATTTAAATCAAGGGCTGG 246
|||||||||| |||||| | |||||||||| ||||| || |||||||||||||||||
Sbjct 80 TCCAGTTAGACCTGAATGTCAACCAGATGTTCCAAGGACCCGTTTTAAATCAAGGGCTGG 139
Query 247 TAAA-ACTCTTAGTGCTAGAAAATGGCACGCTGCGTTTACTGGAGATGGACATTTGGATA 305
||| ||||| |||||||||| ||||| ||||||||||||| |||||| ||||||||||
Sbjct 140 -AAAGACTCTAAGTGCTAGAAGGTGGCATGCTGCGTTTACTGAAGATGGCCATTTGGATA 198
Query 306 TGGAAAGAGTTCTTCGCCGTATACAGCGAGGGGGAATTCATCCCTCAATCAAAGGAGAGG 365
|||||| ||| ||| | ||||||||||| || |||||||||||||| ||||| || | |
Sbjct 199 TGGAAAAAGTGCTTAGACGTATACAGCGCGGAGGAATTCATCCCTCGATCAAGGGCGCTG 258
Query 366 TTTGGGAGTTTTTGTTA-GGAGCTTACGATCCAGACAGCACTTTTGAAGAACGGAACAAG 424
|||||||||||||| || || || ||||||||||||||||||||||| ||| ||||| |
Sbjct 259 TTTGGGAGTTTTTGCTAGGGTGC-TACGATCCAGACAGCACTTTTGAGGAAAGGAAC-AT 316
Query 425 T-TGAGGAATCACAGAAGGGAGCAGTATTATGCTTGGAAAGAAGAATGTAAGAATATGGT 483
| ||||||||| ||||||||||||||| ||| |||||||||||||||||||| |||||
Sbjct 317 TCTGAGGAATCGCAGAAGGGAGCAGTACGGTGCATGGAAAGAAGAATGTAAGAAAATGGT 376
Query 484 TCCTCTTGTTGGTAGCGGAAAGTTTGTCACGATGGCAGTTGTTGC-GGAAGATGGGCAGC 542
|||| | ||||||| || |||| |||||| |||||||| ||| | ||| ||||| | |
Sbjct 377 TCCTGTCATTGGTAGTGGCAAGTATGTCACAATGGCAGTGGTT-CAAGAAAATGGGAACC 435
Query 543 CATTAGAAGAATCCTCAGTAGACAATCAAGAATGGGTTGTGAAAACCGCT-ATAACAGAC 601
|| |||| ||||| || ||||| ||||||| |||| ||||||||| | | | |||||
Sbjct 436 CAATAGACGAATCTTCTGTAGAAAATCAAGGATGGATTGTGAAAAATG-TCGTTACAGAT 494
Query 602 AAGCGTGTGCTCCAGTGGATGCTTGT-G-TTGAGTCAAATCGGTCTCGATGTTGTTAGAA 659
|| | ||||| |||||||||| | | | | | || ||||| || ||||||| |||||
Sbjct 495 GAGAGAGTGCTACAGTGGATGC-TCTCGCTACA-CCAGATCGGCCTTGATGTTGCTAGAA 552
Query 660 CGGATCGGTATCTCTGCTTTTATGAGAGTGAAAGTAATCAAGCAAGACTATGGGATATTC 719
| ||||||||||||||||||||||||| ||| |||||||| ||| ||| ||||| |||
Sbjct 553 CAGATCGGTATCTCTGCTTTTATGAGAATGATCGTAATCAATCAAAACTGTGGGACGTTC 612
Query 720 TTTCCATCTATACATGGTTAAATCCTGATATTGGCTATGTTCAGGGAATGAACGACATAT 779
|| |||| ||||||||||| |||| ||||||||| ||||||||||||||||| || ||||
Sbjct 613 TTGCCATATATACATGGTTGAATCTTGATATTGGTTATGTTCAGGGAATGAATGATATAT 672
Query 780 GTTCCCCCATGATAATCCTAC-TTGAAGATGAAGCCGACGCTTTCTGGTGCTTTGAGCGT 838
||||||| ||||||||||| | |||| |||||||||||||||||||||||||||||||||
Sbjct 673 GTTCCCCAATGATAATCCT-CTTTGATGATGAAGCCGACGCTTTCTGGTGCTTTGAGCGT 731
Query 839 GCAATGCGAAGACTAAGAGAAAATTTCAGGACAACAGCAACATCAATGGGCGTCCAGACT 898
||||||||||||||||| |||||||||||| ||||||||||||||||||| |||||||||
Sbjct 732 GCAATGCGAAGACTAAGGGAAAATTTCAGGGCAACAGCAACATCAATGGGTGTCCAGACT 791
Query 899 CAGCTGGGTATGCTCTCACAGGTCATTAAAACCGTTGATCCTCGGCTCCATCAACATCTT 958
||||||||| ||||||||||||||||||| || || |||||||| ||||||||||||||
Sbjct 792 CAGCTGGGTGTGCTCTCACAGGTCATTAAGACAGTGGATCCTCGTCTCCATCAACATCTA 851
Query 959 GAGGATCTCGACGGTGGAGAGTATCTGTTTGCTATACGAATGTTGATGGTA-TTGTTCAG 1017
||||||||||| ||||| ||||||||||||||||| || ||| |||||||| || |||||
Sbjct 852 GAGGATCTCGATGGTGGGGAGTATCTGTTTGCTATTCGGATGCTGATGGTACTT-TTCAG 910
Query 1018 AAGAGAGTTTTCCTTCCTTGATGCTTTGTACCTTTGGGAGCTGATGTGGGCTATGGAATA 1077
||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 911 GAGAGAATTCTCCTTCCTTGACGCTTTGTACCTTTGGGAGCTGATGTGGGCGATGGAGTA 970
Query 1078 CAATCCAAACAAGTTTGCATCATACGAAGAACCACAGAACATGAA-CAACTCCTCAGGAC 1136
|||||||| || ||||||| |||| || |||| | | ||| ||| |||| | || |
Sbjct 971 CAATCCAACCATGTTTGCAACATATGAGGAACTAGAAAACC-GAAACAACGCAGCATC-C 1028
Query 1137 AGGATCCGAGGTTACTTAAGCAGTATGGAAAATTTGAGAGAAAATATATAAAGAGTGGCC 1196
| |||| | |||||| || | |||||| || ||||| || ||||| ||||| ||||| |
Sbjct 1029 -G-ATCCCAAGTTACTAAAACGGTATGGCAAGTTTGAAAGGAAATACATAAACAGTGGGC 1086
Query 1197 AGAACGAGCAACA-C--AACACGCTTGCTGTTTTTGTTGTGGCTAGTGTTCTTGAAACAA 1253
||||||||||||| | || ||||||||||| ||||| || || || ||||| | ||||
Sbjct 1087 AGAACGAGCAACATCGCAATACGCTTGCTGTCTTTGTGGTCGCAAGCGTTCTACAGACAA 1146
Query 1254 AGAACAAACGTCTCTTGAAGGAAGCTAAAGGCCTAGATGACGTTGTTCAGATATTGGGAG 1313
|||||||||||||||||||||| || |||||| |||| || |||||||||||| | ||||
Sbjct 1147 AGAACAAACGTCTCTTGAAGGAGGCCAAAGGCTTAGACGATGTTGTTCAGATACTAGGAG 1206
Query 1314 GTATTGCAGGTAAT-TTGGACGCGAGAAAAGCGTGTAAAGAAGCGTTGAAGATTCATGAA 1372
||||| |||||| ||| |||||| |||||| |||||||||||||||||||| ||||||
Sbjct 1207 ACATTGCGGGTAATCTTG-ACGCGAAAAAAGCATGTAAAGAAGCGTTGAAGATCCATGAA 1265
Query 1373 AAATTCCTGAAAAAGGCTAATAGTAA 1398
||||||||||||||||||||||||||
Sbjct 1266 AAATTCCTGAAAAAGGCTAATAGTAA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63191716455
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5