BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28556.1
Length=1403
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491908 jgi|Araly1|491908|fgenesh2_kg.7__1341__AT4G28556.1 1356 0.0
> Ahg491908 jgi|Araly1|491908|fgenesh2_kg.7__1341__AT4G28556.1
Length=1008
Score = 1356 bits (734), Expect = 0.0
Identities = 934/1026 (91%), Gaps = 32/1026 (3%)
Strand=Plus/Plus
Query 373 TTATTTTCTCAAGAAAACTATGGATTCTTGAGCTAAATATATGATTCTCTTATTCA-TTT 431
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||
Sbjct 1 TTATTTTCTCAAGAAAACTATGGATTCTTGAGCTAAATATATGGTTCTCCTATTCATTTT 60
Query 432 TTCATTATCCCTTAAATTTTGAAGAGTTTTATGGTCACAAATTTTTGTAAATATAAAGAT 491
||||| ||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 61 TTCATCATCCCTTTAATTTTGAAGAGTTTTATGGTCACAAAATTTTGTAAATATAAAGGT 120
Query 492 CATTTTTGTAGATTTTAAAACTGGTTTATTAGGCTAGGAAATTTGGATATTTTTAATATA 551
||||||||||| |||| |||||||||||| |||| |||||||||||||||| ||||||
Sbjct 121 CATTTTTGTAG-TTTTTTTACTGGTTTATTAAGCTACGAAATTTGGATATTTTCAATATA 179
Query 552 TGCACGTT-GTT--T-TTTCGTTCCTTTCATCGGTCATTCGTTTTGTACAAATAAAACAA 607
||| |||| ||| | ||| | ||||||||||| ||||||||||||||||||| ||
Sbjct 180 TGCTCGTTCGTTGATCTTTTGCTCCTTTCATCGTTCATTCGTTTTGTACAAAT-----AA 234
Query 608 AACTAGGATACAAGAATTTGGTTTCCACAAAGAGAAGAGATATATGCAACTTGGAATGTC 667
||| | || ||||||||||||||||||||||||||| ||||||||| | ||||||
Sbjct 235 AAC------A-AA-AATTTGGTTTCCACAAAGAGAAGAGATCTATGCAACTCGCAATGTC 286
Query 668 AAGTACCAAGATGAAAAGTCTCTTGAAAGGCCTCCGATACATATCTCAAGTTTTTGCAAT 727
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 287 AAGTACCAAGATGAAAAGCCTCTTGAAAGGCCTCCGATACATATCTCAAGTTTTTGCAAT 346
Query 728 AGAAGGTGAAAAGGAAGAAGAGATGCAAATAGGAAATCCAACGGACGTAAAGCATGTTGC 787
|||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 347 AGAAAGTGAAAAGGAACAAGAGATGCAAATCGGAAATCCAACGGACGTAAAGCATGTTGC 406
Query 788 CCACATTGGTTGGGATGGACCGTCTGATAATGCCACTGCACCTAGCTGGATGAACGATTT 847
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 407 CCACATTGGTTGGGATGGACCTTCAGATAATGCCACTGCACCTAGCTGGATGAACGATTT 466
Query 848 CAAGAGTTCTCCTGTAATGGAAT---CAATTCAAGGATTAGGAGAAGACGATTCCTCAGT 904
|||||||||||||| || ||||| ||| |||| ||| ||||||||||||||||||||
Sbjct 467 CAAGAGTTCTCCTGGAACGGAATCAACAACTCAATTATTTGGAGAAGACGATTCCTCAGT 526
Query 905 GAAATGTCAATCAGAGTTTGGTGGTCGGACTAGAGATTTACCAAAACTACCAAAATCCAC 964
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 527 GAAATGTCAATCAGAGTTTGGTGGTCGGTCCAGAGATTTACCAAAACTACCAAAATCCAC 586
Query 965 GAGAAAATCATCGTCTGAGAAAGGTTCTCCGACCAAAGAAAGATCAGACAAGACCAAACG 1024
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 587 GAGAAAATCATCATCTGAGAAAGGTTCTCCGACAAAAGAAAGATCAGACAAGACCAAACG 646
Query 1025 TCGGACTTCAAACAAAGGCACATCATCGTCTAGGAGAACCAAAGACGAAGATTCTACCTC 1084
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 647 TCGAACTTCAAACAAAGGCACTTCATCGTCTAGGAGAACCAAAGACGAAGATTCTACCTC 706
Query 1085 ATCGTCTAGGAGAACAACTAAAGATGAAGATTCTTCTTTGTCTCAACATAGTGCTGGATT 1144
||||||||||||||| |||||| ||||| ||||||| |||||||||||||| ||||||
Sbjct 707 ATCGTCTAGGAGAAC---TAAAGACGAAGACTCTTCTTGGTCTCAACATAGTGTTGGATT 763
Query 1145 ACCAGAGGTTCCAAAGAAGTCAAAGAGAAAGAAATCTAAAGAAGCTGGTAATGGAGGGTC 1204
||||||| |||||||||| |||||||| |||||||||||||||| |||||||||||||||
Sbjct 764 ACCAGAGATTCCAAAGAAATCAAAGAGGAAGAAATCTAAAGAAGGTGGTAATGGAGGGTC 823
Query 1205 TTCGAGATCATCACGAATATCAGAAGCTGATTATATGTCTGATACTGGTTCCGATAGATC 1264
||| ||||| || |||||||||||||||||| | ||||| |||||||| |||| ||||||
Sbjct 824 TTCAAGATCGTCTCGAATATCAGAAGCTGATAAAATGTCGGATACTGGCTCCGTTAGATC 883
Query 1265 TATGCCTCAATTTGAAGACGACAGAAATGGGTTTTGATTTTCATTTTCGT--T-AAAGAA 1321
||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||| ||
Sbjct 884 TATACCTCAATTCGAAGACGACAGAAATGGGTTTTGATTTTCATTTTCGTAATTAAAAAA 943
Query 1322 AACA-A-GAGACTTTAAAGTTTTGTAATAGTAAAGAAATGTTGTAGAAACTT-TTGAACA 1378
|||| | |||||||| ||||||||||||||||||||||||||||| ||| || ||||| |
Sbjct 944 AACACAAGAGACTTTTAAGTTTTGTAATAGTAAAGAAATGTTGTAAAAA-TTGTTGAAGA 1002
Query 1379 TAGTCT 1384
|| |||
Sbjct 1003 TAATCT 1008
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52450267365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5