BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28560.1
Length=1353
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491907 jgi|Araly1|491907|fgenesh2_kg.7__1340__AT4G28560.1 1912 0.0
> Ahg491907 jgi|Araly1|491907|fgenesh2_kg.7__1340__AT4G28560.1
Length=1365
Score = 1912 bits (1035), Expect = 0.0
Identities = 1260/1368 (92%), Gaps = 18/1368 (1%)
Strand=Plus/Plus
Query 1 ATGGCGTCTT---TTACTAACctc--tc-tcttctcctcctctttctctTCACCGCTACA 54
|||||||||| ||| |||||| || ||| ||||||||||||||||| || ||||||
Sbjct 1 ATGGCGTCTTCACGTACCAACCTCTTTCTTCTCCTCCTCCTCTTTCTCTTTACTGCTACA 60
Query 55 CTCATCACCAGCCAACAAAGCGACGACGACGAAAATGCGTCACCACAACTCGCTCTAGAC 114
|||||||||||||| |||| |||||||||||| | || ||||| |||||||||||||||
Sbjct 61 CTCATCACCAGCCAGCAAAACGACGACGACGACGACGCTTCACCTCAACTCGCTCTAGAC 120
Query 115 CCGTCGGAGCAAGAAGCGGTCTACCGAGTTCTCGACTCAGTCAACTCAGCCATCTCATGG 174
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CCGTCGGAGCAAGAAGCGGTTTACCGAGTTCTTGACTCAGTCAACTCAGCCATCTCATGG 180
Query 175 CGAACCATCTTCCCCGACGACATCTGCGCTTCACCACCTGACGGCGTCGTTTGCGATAAC 234
||||||||||||||||||||| ||||||||||| |||| |||||||||||||||||| ||
Sbjct 181 CGAACCATCTTCCCCGACGACCTCTGCGCTTCAACACCAGACGGCGTCGTTTGCGATTAC 240
Query 235 CTCTACGCTTCTCAAAACGGCGTCGCAACGTCTGTTCACGTCACGGAGTTCCATTTAGGC 294
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 241 CTCTACGCTTCTCAAAACGGCGTCGCGACGTCTGTTCACGTCACCGAGTTCCATTTAGGC 300
Query 295 TACCTCTCGGATTACACTCAAAACCCTCCTTGCTCTTCTAATGCCACGCTTGATCCTCTC 354
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 301 TACCTCTCGGATTACACTCAAAACCCTCCTTGCTCTTCAAATGCTACGCTTGATCCTCTC 360
Query 355 CTCTTTACTGCTTTCAAACACCTTCGTAAGCTTTTCTTCTACAAATGCTTCACCG-ACGC 413
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 361 CTCTTTACTGCATTCAAACACCTTCGTAAGCTTTTCTTCTACAAATGCTTCACCGGA-GC 419
Query 414 TCGTG-CCTCGTTGCCGTTAACAGTCCCGGAGGATTTCGGCTCTGTTCTCGAAGAGTTGG 472
||||| || | |||||| ||||||||||||||||||||| |||||||| ||||||||||
Sbjct 420 TCGTGTCCCC-TTGCCGGAAACAGTCCCGGAGGATTTCGGTTCTGTTCTTGAAGAGTTGG 478
Query 473 TGTTCATCGAAAACCCATCTCTCGTCGGCGAGATCGGAGCCATGATCGGTAATTTCACAA 532
|||| ||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 479 TGTTTATCGAGAACCCGTCTCTCTTCGGCGAGATCGGAGCCATGATCGGTAATTTCACAA 538
Query 533 AGCTGAGAAGATTAGTTCTTACCGGTAACGGGTTTCACGGGTCAATTCCGGGTCAAATCG 592
||||||||||||| |||||||| || ||||||||||||||||| ||||||||||||||||
Sbjct 539 AGCTGAGAAGATTGGTTCTTACTGGAAACGGGTTTCACGGGTCGATTCCGGGTCAAATCG 598
Query 593 GCGATTTGGTGAGTCTAGAGGAGATTACACTCTCCAGAAACAGCTTGACCGGTGGGTTTC 652
| |||||||| ||| |||| |||||||| ||||| ||||||||||||| |||||| ||||
Sbjct 599 GAGATTTGGTTAGTATAGAAGAGATTACGCTCTCTAGAAACAGCTTGAGCGGTGGTTTTC 658
Query 653 CGGCGAACGCAACGTCTCGTCTGAAGAATCTAAAAGTTCTAGACTTTAGCCATAACTTTA 712
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||
Sbjct 659 CGGCGAACGCAACGTCTAGTCTGAAAAATCTAAAAGTTCTAGACTTTAGCCATAATTTTC 718
Query 713 TCAACGGAAACGCCCCTGATTCCATCGGAGACTTGACAGAGCTTCTCAAGCTAGACCTCA 772
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 719 TCAACGGAAATGCCCCTGATTCCATCGGAGACTTGACAGAGCTTCTCAAGCTAGATCTCA 778
Query 773 GCTTCAATGAGTTCACCGGAGAGGTCCCTTCCGGCGTCGG-AAATTTGAAAAAGCTCGTA 831
||||||||||||||||||||||| | |||||||||||||| ||||| ||||||||||| |
Sbjct 779 GCTTCAATGAGTTCACCGGAGAGATTCCTTCCGGCGTCGGGAAATT-GAAAAAGCTCGAA 837
Query 832 TTTTTAGACTTGAGTTACAACCGTTTCGGGAATTTCGGCGTTCCTCTGTTTCTAGCGGAG 891
||||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 838 TTTTTGGACTTGAGTTACAACCGTTTCGGAAATTTCGGCGTTCCTCGGTTTCTAGCGGAG 897
Query 892 ATGTCCAGTTTGAGAGAGGTTCATCTGAGTGGGAACAAGCTCGGTGGTCGTATACCGGCG 951
||| |||| ||||||||| || ||||||||||||||| ||||||||||||||||||| |
Sbjct 898 ATGCCCAGATTGAGAGAGCTTTTTCTGAGTGGGAACAATCTCGGTGGTCGTATACCGGAG 957
Query 952 ATTTGGAAGAATCTCGAGGGTATTTCGGGGATTGGATTCTCAAGGATGGGTCTTGAAGGA 1011
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 958 ATTTGGAAGAATCTCGAGGGTATTTCGGGAATTGGATTCTCGAGGATGGGTCTTGAAGGA 1017
Query 1012 AACATCCCAGCTTCAATGGGTTCGAGTCTTAAAAATCTCTGCTTTCTAGCTCTTGACAAC 1071
|| |||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 1018 AATATCCCAACTTCAATGGGTTCGAGTCTTAAAAATCTCTGCTTTTTAGCGCTTGACAAC 1077
Query 1072 AACAATCTCGACGGACAAATCCCGGAGGAGTTTGGGTTTCTGGACTCTGCTCGTGAAATC 1131
||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1078 AACAATCTCGACGGACATATCCCGGAGGAGTTTGGGTTTCTGGACTTTGCTCGTGAAATT 1137
Query 1132 AATCTAGAGAACAATAACCTCACCGGAAAAGCTCCATTCTCCGACAGTTTCAGAGATAGA 1191
||||| |||||||| || ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1138 AATCTGGAGAACAACAATCTCACCGGAAAAGCTCCATTCTCCGACTGTTTCAGAGATAGA 1197
Query 1192 ATCGGGAAAAAGCTCAAACTGAGCGGGAATGTAAATCTCCAAGTCAAGAATTCCGATCCT 1251
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||
Sbjct 1198 ATCGGGAAAAAACTCAAATTGAGCGGGAACCCAAATCTCCAAGTCAAGAATTCCGATCCT 1257
Query 1252 CATCTCGCCGGAAGAGCTCTATATTCATCGGCGAGAAAGGTTTTACCTTT---G---ATT 1305
|||||||||||| ||||||| | ||||||||||||||||||||||| ||| | |||
Sbjct 1258 CATCTCGCCGGACGAGCTCTGTTTTCATCGGCGAGAAAGGTTTTACTTTTACCGTTGATT 1317
Query 1306 TACTTCCCGGCGACTTTATTGGCTCTTTACATTTCAATAACACAGTGA 1353
| |||||||||| ||||||| ||||||||| ||| |||||||||||||
Sbjct 1318 TGCTTCCCGGCGGCTTTATTAGCTCTTTACGTTTTAATAACACAGTGA 1365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50627233776
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5