BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28570.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value Ahg491906 jgi|Araly1|491906|fgenesh2_kg.7__1339__AT4G28570.1 3688 0.0 > Ahg491906 jgi|Araly1|491906|fgenesh2_kg.7__1339__AT4G28570.1 Length=2499 Score = 3688 bits (1997), Expect = 0.0 Identities = 2340/2505 (93%), Gaps = 26/2505 (1%) Strand=Plus/Plus Query 24 AGACTTGTCTGATTCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTAATCCAATCAT 83 |||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 5 AGACTTGTCTGAATCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTGATCCAATCAT 64 Query 84 TTCTCCAATTCTCCAAGGAGTTTGGTAATACACAAATAACATGGAAGACGTTAGAAGAAG 143 | ||||||||||||| || ||||||||| ||||||||||||||||| | ||||||||| Sbjct 65 TAGTCCAATTCTCCAACTAG-TTGGTAATAGACAAATAACATGGAAGAAGATAGAAGAAG 123 Query 144 AAACAGAGGACATCCTCTGCTCAGATCCAAGAAGAGAGGAGAAGGCTACAACCATGGCTT 203 ||||||||||||||||||| | |||||||||||||||| ||| ||||||||||||||||| Sbjct 124 AAACAGAGGACATCCTCTGTTGAGATCCAAGAAGAGAGAAGACGGCTACAACCATGGCTT 183 Query 204 CTCACCGTCTCAGATTCAATCTCTTGCCGTCATCTGTCAAACTTTCCTCCCTCCGGAGAC 263 |||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 184 CTCACCGTCTCAGATTCAATCTCTCGCCGTCATCTGTCAAACTCTCCTCCCTCCGGAGAC 243 Query 264 CACGTCGGAACAGCAAGCTGTTAATTCCTTCCACGTAGCCTCCTCTACTCAACCACCATT 323 |||| | || ||||||||| | |||||||| |||||||||||||||||| ||||||||| Sbjct 244 CACGGCAGAGCAGCAAGCTCTGAATTCCTTTAACGTAGCCTCCTCTACTCTACCACCATT 303 Query 324 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGATCAGAAGCAGTCAAAGTTTT 383 |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| Sbjct 304 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGACCAGAAGCAGTCAAGGTTTT 363 Query 384 GAGAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 443 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 GAAAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 423 Query 444 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGATAAAAG 503 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 424 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGTTAAAAG 483 Query 504 AGAAGCGATCTTGAG-AAATTGGTCTAGACAAAGTGGATTCCTTCTTCCATTTCGTATCA 562 ||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||| |||| Sbjct 484 AGAAGAGATCTTGAGGAAAT-GGTCTAGACAGAGTGGATTCCTTCTTCCATTTCGAATCA 542 Query 563 CTTTCTTCCTTGCAAAATTCTACACCCTCTTCTACTTCTTCTCCCAGACGGATGAGAATC 622 |||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| Sbjct 543 CTTTCTTCCTTGCAAAATTCTATACCCTCTTCTACTTCTTTTCCCAGACGGATGAGAATC 602 Query 623 TGAAGAATCCTGCACTGGAAGCTATAGGGTATTGCATCGATGGGACAGAGAGAAGTAGCA 682 |||||||||||||| ||||| |||||||||||||| ||||||||| ||| | | |||||| Sbjct 603 TGAAGAATCCTGCATTGGAAACTATAGGGTATTGCCTCGATGGGATAGAAACATGTAGCA 662 Query 683 ACAAGAAGAGTGAAGCAGATGAGA-AGCGACGACCTCTAGAGAAAGGGATCATTGAAACT 741 |||||||||||||||||||||||| | || ||||||||||||| |||||||||||| ||| Sbjct 663 ACAAGAAGAGTGAAGCAGATGAGAGA-CGGCGACCTCTAGAGACAGGGATCATTGAGACT 721 Query 742 ATGCATGAGAGTGACGTAACCATCACACAATCTCTAACTGAAAAAGGTGTTCATGTTGCT 801 | ||||||| ||||| ||||||||||||||||||||| || |||||||||||||||||| Sbjct 722 AGGCATGAGCGTGACATAACCATCACACAATCTCTAATTGGAAAAGGTGTTCATGTTGCG 781 Query 802 AGAGACGATGGTGACAATGTGTACAGGATCAGATGCGATGCGGTTGTTGTAGGCTCAGGA 861 ||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||| Sbjct 782 AGAGACGATGGTGACAATGTGCATAGGATCAGATGCGATGCGGTTATTGTAGGCTCAGGA 841 Query 862 AGTGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTGAAAGTCTTGGTTCTA 921 || ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 842 AGCGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTCAAAGTCTTGGTTCTT 901 Query 922 GAGAAAGGAAACTACTTTACAGCTCATGACTATTCGGGTCTAGAAGTTCCGTCTATGCTC 981 ||||||||||| |||||| || |||| || |||||||||||||||| ||||||||||||| Sbjct 902 GAGAAAGGAAATTACTTTGCACCTCAGGATTATTCGGGTCTAGAAGGTCCGTCTATGCTC 961 Query 982 GAGTTATACGAAAAAGGCGGCCTTTTGACTACGGTTGATGGGAAATTTATGCTCTTGGCT 1041 || ||||||||||| |||| |||||||| |||||||||||||||||||||||||||||| Sbjct 962 GAACTATACGAAAAAAGCGGGCTTTTGACGACGGTTGATGGGAAATTTATGCTCTTGGCT 1021 Query 1042 GGTTC-AGCTGTTGGAGGAGGTACAGCTGTTAATTGGTCTGCATCTATAAGGACACCGGA 1100 ||||| | |||| |||||||||||||| |||||||||||||||||||||||||| ||||| Sbjct 1022 GGTTCGA-CTGTGGGAGGAGGTACAGCGGTTAATTGGTCTGCATCTATAAGGACGCCGGA 1080 Query 1101 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATCAAGTTTTTTGGTAGCCAAGAATA 1160 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1081 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATTAAGTTTTTCGGTAGCCAAGAATA 1140 Query 1161 TCAGTCTGCAATGGATGAAGTTACGATAAGGATTGGTGTCACGGAAAGATGTGTCAAACA 1220 ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| | Sbjct 1141 CCAGTCTGCAATGGATGAAGTTACGAAAAGGATCGGTGTCACGGAAAGATGTGTCAAAGA 1200 Query 1221 CGGGTTTCAGAATCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAATC 1280 ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1201 CGGGTTTCAAAACCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAGTC 1260 Query 1281 AGTTCCAAGGAACTCACCAGAGGATCATTACTGTGGCTTGTGCGGGTATGGATGTAGAGC 1340 ||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||| Sbjct 1261 AGTTCCAAGGAACTCACCAGAAGATCATTATTGCGGCTTGTGCGGGTATGGATGTAGAGC 1320 Query 1341 AGGAGCCAAGAACGGGACAGATCAAACCTGGTTGGTTGATGCTGTAGAGAATGGTGCAGT 1400 ||||||||||||||||||||| | ||||||| ||||||||||||||||||| |||||||| Sbjct 1321 AGGAGCCAAGAACGGGACAGACCGAACCTGGCTGGTTGATGCTGTAGAGAACGGTGCAGT 1380 Query 1401 GATCCTGACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGTAGTAGCAA 1460 |||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1381 GATCCTAACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGCAGTAGCAA 1440 Query 1461 TGAGAGAAAGAAACGATGTGTGGGAGTGTTTGCTAGCTCTGTTGGAGGAAAGATTGGGAA 1520 |||||||||||||||||||||||||||| |||| || ||||||||||||||||||||||| Sbjct 1441 TGAGAGAAAGAAACGATGTGTGGGAGTGATTGCGAGTTCTGTTGGAGGAAAGATTGGGAA 1500 Query 1521 GAAGTTTATTATCGAAGCTCGAGTAACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1580 ||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1501 GAAATTTATTATCGAAGCTCGAGTGACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1560 Query 1581 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGAACATTGGAAGGAACTTAAAGCTGCACCC 1640 ||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| Sbjct 1561 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGCACATTGGGAGGAACTTAAAGCTGCACCC 1620 Query 1641 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1700 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1621 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1680 Query 1701 TGAGGGAGGGATCATCACGTCCGTCCATCATATGAATGATACTGAATCTGGATGCA-AAG 1759 ||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| || Sbjct 1681 CGAGGGAGGGATCATCACGTCCGTCCATCACATGAATGATGCTGAATCAGGATGCAGAA- 1739 Query 1760 CAATACTGGAGAATCCACTGATAGGACCAGCTTCTTACGCAGGGTTGAGCCCGTGGGTTT 1819 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 1740 CAATACTGGAGAATCCACTGATAGGACCAGCTTCGTATGCGGGGTTGAGCCCGTGGGTTT 1799 Query 1820 CAGGACCAGACCTTAAAGAGAGGATGATTAAGTACGGAAGAACAGCTCATCTTTTTGCTC 1879 ||||| |||||||||| ||| ||||||||||||||||||||||||||||| | ||||||| Sbjct 1800 CAGGAGCAGACCTTAAGGAGCGGATGATTAAGTACGGAAGAACAGCTCATGTGTTTGCTC 1859 Query 1880 TGGTTCGGGACTTAGGGTCAGGTGAGGTTATGATGGAAAACGAAGTTACATACAGGACAA 1939 ||||||||||| | |||||||||||||| |||| |||| |||||||||||||||||||| Sbjct 1860 TGGTTCGGGACATCGGGTCAGGTGAGGTCATGAAAGAAAGCGAAGTTACATACAGGACAA 1919 Query 1940 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTAGACAAGCTTTGCGGGTTTCGGTTG 1999 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1920 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTCGACAAGCTTTGCGGGTTTCGGTTG 1979 Query 2000 CAGCTGGTGCAGTTGAAGTCGGAACATATAGGAGTGATGGACAGAAGA-TGAAGTGTGAG 2058 |||| || ||||||||||| || |||||||||||||||||||||| || ||||||||||| Sbjct 1980 CAGCAGGCGCAGTTGAAGTTGGGACATATAGGAGTGATGGACAGA-GAATGAAGTGTGAG 2038 Query 2059 GCAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCTGTTGGTGGGGTT 2118 | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 2039 GGAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCGGTTGGTGGGGTT 2098 Query 2119 GGCACAAAAGGAGAGTATTGGACGACGTACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2178 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2099 AGCACAAAAGGAGAGTATTGGACGACATACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2158 Query 2179 ATGGGAGTCACCGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2238 ||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2159 ATGGGAGCCAACGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2218 Query 2239 GGGTTGTTTGTTTGTGATGGAAGTATATTGCCATCAGCTGTTGGGGTTAACCCAATGATC 2298 || |||||||| |||||||||||| ||||||| |||||||||||||| |||||||||||| Sbjct 2219 GGATTGTTTGTCTGTGATGGAAGTGTATTGCCTTCAGCTGTTGGGGTAAACCCAATGATC 2278 Query 2299 ACCATTCAGTCTACTGCTTACTGCATCTCCTCAAAGATAGTTGACTCGCTGCAAAACAAA 2358 |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 2279 ACCATTCAGTCTACCGCTTACTGCATTTCCTCAAAGATAGTTGACTCGCTCCAAAACAAA 2338 Query 2359 ACAAAAGTATAGAGAAGTaaaaaaaGAAAGAACTGAAACCATCCCATTAGTATTCATATC 2418 | ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || Sbjct 2339 AGAAAAGTATAGAGAAGTAAAAA--GAAAGAACTCAAACCATCCCATTAGTATTCATGTC 2396 Query 2419 GAA-TAAATA-TGTTTTTCCTTGCAAGACAAATTTTGTTTAAGAATCATGGAATA--ACT 2474 ||| |||||| | |||||||||| |||||| |||||||| | ||||||||||||| ||| Sbjct 2397 GAAATAAATAAT-TTTTTCCTTGTAAGACAGATTTTGTT-ATGAATCATGGAATAGTACT 2454 Query 2475 T-A---T---CTTGACGACAACAAAGATGTAAACAAATGATATAT 2512 | | | |||||| |||| |||||||||| |||||||||||| Sbjct 2455 TCAGCATTATCTTGACCACAATAAAGATGTAAGCAAATGATATAT 2499 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103643556645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5