BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28570.1
Length=2747
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491906 jgi|Araly1|491906|fgenesh2_kg.7__1339__AT4G28570.1 3688 0.0
> Ahg491906 jgi|Araly1|491906|fgenesh2_kg.7__1339__AT4G28570.1
Length=2499
Score = 3688 bits (1997), Expect = 0.0
Identities = 2340/2505 (93%), Gaps = 26/2505 (1%)
Strand=Plus/Plus
Query 24 AGACTTGTCTGATTCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTAATCCAATCAT 83
|||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 5 AGACTTGTCTGAATCTTCAATAAGCTCACGGATTTCTCCTCAAAATCCTGATCCAATCAT 64
Query 84 TTCTCCAATTCTCCAAGGAGTTTGGTAATACACAAATAACATGGAAGACGTTAGAAGAAG 143
| ||||||||||||| || ||||||||| ||||||||||||||||| | |||||||||
Sbjct 65 TAGTCCAATTCTCCAACTAG-TTGGTAATAGACAAATAACATGGAAGAAGATAGAAGAAG 123
Query 144 AAACAGAGGACATCCTCTGCTCAGATCCAAGAAGAGAGGAGAAGGCTACAACCATGGCTT 203
||||||||||||||||||| | |||||||||||||||| ||| |||||||||||||||||
Sbjct 124 AAACAGAGGACATCCTCTGTTGAGATCCAAGAAGAGAGAAGACGGCTACAACCATGGCTT 183
Query 204 CTCACCGTCTCAGATTCAATCTCTTGCCGTCATCTGTCAAACTTTCCTCCCTCCGGAGAC 263
|||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 184 CTCACCGTCTCAGATTCAATCTCTCGCCGTCATCTGTCAAACTCTCCTCCCTCCGGAGAC 243
Query 264 CACGTCGGAACAGCAAGCTGTTAATTCCTTCCACGTAGCCTCCTCTACTCAACCACCATT 323
|||| | || ||||||||| | |||||||| |||||||||||||||||| |||||||||
Sbjct 244 CACGGCAGAGCAGCAAGCTCTGAATTCCTTTAACGTAGCCTCCTCTACTCTACCACCATT 303
Query 324 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGATCAGAAGCAGTCAAAGTTTT 383
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 304 CACTGATGAGGTGGCGGAGATGATAGTGAAAAACGGACGACCAGAAGCAGTCAAGGTTTT 363
Query 384 GAGAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 443
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 GAAAATCATATTGATGATTTTGTCATTCAGATTTGGAACTTTGTTGCTTTGTGGGTCTCT 423
Query 444 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGATAAAAG 503
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 424 CTGTCTTGATAAGAGTTGGCCTTTTGTTCTTAAATTCTCTCAACTTCCATTGGTTAAAAG 483
Query 504 AGAAGCGATCTTGAG-AAATTGGTCTAGACAAAGTGGATTCCTTCTTCCATTTCGTATCA 562
||||| ||||||||| |||| |||||||||| ||||||||||||||||||||||| ||||
Sbjct 484 AGAAGAGATCTTGAGGAAAT-GGTCTAGACAGAGTGGATTCCTTCTTCCATTTCGAATCA 542
Query 563 CTTTCTTCCTTGCAAAATTCTACACCCTCTTCTACTTCTTCTCCCAGACGGATGAGAATC 622
|||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||
Sbjct 543 CTTTCTTCCTTGCAAAATTCTATACCCTCTTCTACTTCTTTTCCCAGACGGATGAGAATC 602
Query 623 TGAAGAATCCTGCACTGGAAGCTATAGGGTATTGCATCGATGGGACAGAGAGAAGTAGCA 682
|||||||||||||| ||||| |||||||||||||| ||||||||| ||| | | ||||||
Sbjct 603 TGAAGAATCCTGCATTGGAAACTATAGGGTATTGCCTCGATGGGATAGAAACATGTAGCA 662
Query 683 ACAAGAAGAGTGAAGCAGATGAGA-AGCGACGACCTCTAGAGAAAGGGATCATTGAAACT 741
|||||||||||||||||||||||| | || ||||||||||||| |||||||||||| |||
Sbjct 663 ACAAGAAGAGTGAAGCAGATGAGAGA-CGGCGACCTCTAGAGACAGGGATCATTGAGACT 721
Query 742 ATGCATGAGAGTGACGTAACCATCACACAATCTCTAACTGAAAAAGGTGTTCATGTTGCT 801
| ||||||| ||||| ||||||||||||||||||||| || ||||||||||||||||||
Sbjct 722 AGGCATGAGCGTGACATAACCATCACACAATCTCTAATTGGAAAAGGTGTTCATGTTGCG 781
Query 802 AGAGACGATGGTGACAATGTGTACAGGATCAGATGCGATGCGGTTGTTGTAGGCTCAGGA 861
||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||
Sbjct 782 AGAGACGATGGTGACAATGTGCATAGGATCAGATGCGATGCGGTTATTGTAGGCTCAGGA 841
Query 862 AGTGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTGAAAGTCTTGGTTCTA 921
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 842 AGCGGAGGAGGTGTTGCAGCTGCAAACCTAGCTAAAGCTGGATTCAAAGTCTTGGTTCTT 901
Query 922 GAGAAAGGAAACTACTTTACAGCTCATGACTATTCGGGTCTAGAAGTTCCGTCTATGCTC 981
||||||||||| |||||| || |||| || |||||||||||||||| |||||||||||||
Sbjct 902 GAGAAAGGAAATTACTTTGCACCTCAGGATTATTCGGGTCTAGAAGGTCCGTCTATGCTC 961
Query 982 GAGTTATACGAAAAAGGCGGCCTTTTGACTACGGTTGATGGGAAATTTATGCTCTTGGCT 1041
|| ||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 962 GAACTATACGAAAAAAGCGGGCTTTTGACGACGGTTGATGGGAAATTTATGCTCTTGGCT 1021
Query 1042 GGTTC-AGCTGTTGGAGGAGGTACAGCTGTTAATTGGTCTGCATCTATAAGGACACCGGA 1100
||||| | |||| |||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1022 GGTTCGA-CTGTGGGAGGAGGTACAGCGGTTAATTGGTCTGCATCTATAAGGACGCCGGA 1080
Query 1101 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATCAAGTTTTTTGGTAGCCAAGAATA 1160
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1081 TCATGTTTTGCAGGAATGGTCTGAAGGGAGTAAGATTAAGTTTTTCGGTAGCCAAGAATA 1140
Query 1161 TCAGTCTGCAATGGATGAAGTTACGATAAGGATTGGTGTCACGGAAAGATGTGTCAAACA 1220
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| |
Sbjct 1141 CCAGTCTGCAATGGATGAAGTTACGAAAAGGATCGGTGTCACGGAAAGATGTGTCAAAGA 1200
Query 1221 CGGGTTTCAGAATCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAATC 1280
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1201 CGGGTTTCAAAACCAGGTTCTGCGGAAAGGGTGCGAGAGACTCGGTTTGCAGGTAGAGTC 1260
Query 1281 AGTTCCAAGGAACTCACCAGAGGATCATTACTGTGGCTTGTGCGGGTATGGATGTAGAGC 1340
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct 1261 AGTTCCAAGGAACTCACCAGAAGATCATTATTGCGGCTTGTGCGGGTATGGATGTAGAGC 1320
Query 1341 AGGAGCCAAGAACGGGACAGATCAAACCTGGTTGGTTGATGCTGTAGAGAATGGTGCAGT 1400
||||||||||||||||||||| | ||||||| ||||||||||||||||||| ||||||||
Sbjct 1321 AGGAGCCAAGAACGGGACAGACCGAACCTGGCTGGTTGATGCTGTAGAGAACGGTGCAGT 1380
Query 1401 GATCCTGACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGTAGTAGCAA 1460
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1381 GATCCTAACAGGGATCAAAGCTGAGAGATTTGTATTAGTAGACAACACTAGCAGTAGCAA 1440
Query 1461 TGAGAGAAAGAAACGATGTGTGGGAGTGTTTGCTAGCTCTGTTGGAGGAAAGATTGGGAA 1520
|||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||
Sbjct 1441 TGAGAGAAAGAAACGATGTGTGGGAGTGATTGCGAGTTCTGTTGGAGGAAAGATTGGGAA 1500
Query 1521 GAAGTTTATTATCGAAGCTCGAGTAACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1580
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1501 GAAATTTATTATCGAAGCTCGAGTGACGGTTTCATCCGCTGGATCGCTGTTAACACCGCC 1560
Query 1581 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGAACATTGGAAGGAACTTAAAGCTGCACCC 1640
||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct 1561 TCTGATGCTTTCGAGTGGGCTAAAGAACCCGCACATTGGGAGGAACTTAAAGCTGCACCC 1620
Query 1641 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1700
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1621 GGTTCTGATGACATGGGGATACTTCCCGGAGAAAGATTCTGAGTTCTCCGGGAAAATGTA 1680
Query 1701 TGAGGGAGGGATCATCACGTCCGTCCATCATATGAATGATACTGAATCTGGATGCA-AAG 1759
||||||||||||||||||||||||||||| ||||||||| ||||||| ||||||| ||
Sbjct 1681 CGAGGGAGGGATCATCACGTCCGTCCATCACATGAATGATGCTGAATCAGGATGCAGAA- 1739
Query 1760 CAATACTGGAGAATCCACTGATAGGACCAGCTTCTTACGCAGGGTTGAGCCCGTGGGTTT 1819
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 1740 CAATACTGGAGAATCCACTGATAGGACCAGCTTCGTATGCGGGGTTGAGCCCGTGGGTTT 1799
Query 1820 CAGGACCAGACCTTAAAGAGAGGATGATTAAGTACGGAAGAACAGCTCATCTTTTTGCTC 1879
||||| |||||||||| ||| ||||||||||||||||||||||||||||| | |||||||
Sbjct 1800 CAGGAGCAGACCTTAAGGAGCGGATGATTAAGTACGGAAGAACAGCTCATGTGTTTGCTC 1859
Query 1880 TGGTTCGGGACTTAGGGTCAGGTGAGGTTATGATGGAAAACGAAGTTACATACAGGACAA 1939
||||||||||| | |||||||||||||| |||| |||| ||||||||||||||||||||
Sbjct 1860 TGGTTCGGGACATCGGGTCAGGTGAGGTCATGAAAGAAAGCGAAGTTACATACAGGACAA 1919
Query 1940 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTAGACAAGCTTTGCGGGTTTCGGTTG 1999
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1920 CCAAGAAAGATAGAGAGAATCTGAGGGCAGGTCTTCGACAAGCTTTGCGGGTTTCGGTTG 1979
Query 2000 CAGCTGGTGCAGTTGAAGTCGGAACATATAGGAGTGATGGACAGAAGA-TGAAGTGTGAG 2058
|||| || ||||||||||| || |||||||||||||||||||||| || |||||||||||
Sbjct 1980 CAGCAGGCGCAGTTGAAGTTGGGACATATAGGAGTGATGGACAGA-GAATGAAGTGTGAG 2038
Query 2059 GCAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCTGTTGGTGGGGTT 2118
| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 2039 GGAATTACTAAAGAAGCCATGGAAGAGTTTCTAGACGAAGTTGATGCGGTTGGTGGGGTT 2098
Query 2119 GGCACAAAAGGAGAGTATTGGACGACGTACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2178
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2099 AGCACAAAAGGAGAGTATTGGACGACATACTTCTCGGCTCACCAGATGGGTAGTTGTAGG 2158
Query 2179 ATGGGAGTCACCGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2238
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2159 ATGGGAGCCAACGCGGAGGAAGGTGCGTTGGATGAGAATGGTGAGAGCTGGGAAGCAGAG 2218
Query 2239 GGGTTGTTTGTTTGTGATGGAAGTATATTGCCATCAGCTGTTGGGGTTAACCCAATGATC 2298
|| |||||||| |||||||||||| ||||||| |||||||||||||| ||||||||||||
Sbjct 2219 GGATTGTTTGTCTGTGATGGAAGTGTATTGCCTTCAGCTGTTGGGGTAAACCCAATGATC 2278
Query 2299 ACCATTCAGTCTACTGCTTACTGCATCTCCTCAAAGATAGTTGACTCGCTGCAAAACAAA 2358
|||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 2279 ACCATTCAGTCTACCGCTTACTGCATTTCCTCAAAGATAGTTGACTCGCTCCAAAACAAA 2338
Query 2359 ACAAAAGTATAGAGAAGTaaaaaaaGAAAGAACTGAAACCATCCCATTAGTATTCATATC 2418
| ||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 2339 AGAAAAGTATAGAGAAGTAAAAA--GAAAGAACTCAAACCATCCCATTAGTATTCATGTC 2396
Query 2419 GAA-TAAATA-TGTTTTTCCTTGCAAGACAAATTTTGTTTAAGAATCATGGAATA--ACT 2474
||| |||||| | |||||||||| |||||| |||||||| | ||||||||||||| |||
Sbjct 2397 GAAATAAATAAT-TTTTTCCTTGTAAGACAGATTTTGTT-ATGAATCATGGAATAGTACT 2454
Query 2475 T-A---T---CTTGACGACAACAAAGATGTAAACAAATGATATAT 2512
| | | |||||| |||| |||||||||| ||||||||||||
Sbjct 2455 TCAGCATTATCTTGACCACAATAAAGATGTAAGCAAATGATATAT 2499
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103643556645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5