BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28580.1
Length=1276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491905 jgi|Araly1|491905|fgenesh2_kg.7__1338__AT4G28580.1 1770 0.0
Ahg487791 jgi|Araly1|487791|fgenesh2_kg.6__925__AT5G09690.1 58.4 1e-07
> Ahg491905 jgi|Araly1|491905|fgenesh2_kg.7__1338__AT4G28580.1
Length=1252
Score = 1770 bits (958), Expect = 0.0
Identities = 1183/1285 (92%), Gaps = 42/1285 (3%)
Strand=Plus/Plus
Query 1 ATGGGATCACTTCGCCGTAGTACGAGCAACCG-CAGCCGGAAGAAGGGTACGGCGGTGAA 59
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGGGATCACTTCGCCGTAGTACGAGCAACCGCCA-CCGGAAGAAGGGTACGGCGGTGAA 59
Query 60 GATGAATAGGATGCCTTCATCTCTATCGCCTCCT-----AC-TCCGCCTTGT-AGTGCAA 112
||||| ||||| ||||||||||||| |||||||| | |||||| | | | |||||
Sbjct 60 GATGACTAGGACGCCTTCATCTCTACCGCCTCCTCCGCCTCTTCCGCC-TATCAATGCAA 118
Query 113 TCGTGGGAGGGACGGGGAAGTCAAAGAAGAGAAGAGGAGGAGTCTGTCTATGGACGAGGT 172
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 119 TCGTGGGAGGGACGGGGAAGTCGAAGAAGAGAAGGGGAGGAGTCTGTCTATGGACGAGGT 178
Query 173 TTGATCGGACTGGATTCATGGAAGTGGCTGGATGTGACAAGAGCACCATCATCGAACGTT 232
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 179 TTGATCGGACTGGATTCATGGAAGTGGTTGGATGTGACAAGAGCACCATCATCGAACGTT 238
Query 233 CTTCTGTTTCGGCTAAGGATTTAAGAACTGCCTTCTCGCACTCTTCTAAAATTCTAGCCA 292
|||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 239 CTTCTGTTTCGGCTAAGGATTTAAGAACTGGTTTCTCTCACTCTTCTAAAATTCTAGCCA 298
Query 293 GAGAGAAAGCTATTGTCCTGAATTTAGAGGTCATAAAGGCGGTAATTACTTCAGAACAAG 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 299 GAGAGAAAGCTATTGTCCTGAATTTAGAGGTCATAAAGGCGGTAATTACTTCAGAAGAAG 358
Query 353 TTATGTTGTTGGATTCTCTCCGTCCTGAAGTTCTTACACTCACTGACCGACTAAAGCATC 412
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 359 TTATGTTGTTGGATTCTCTCCGTCCTGAAGTTCTTACACTCACTAACCGACTAAAGCATC 418
Query 413 ACTTTCCTCGGAAGGATGGTCCTGAAAATATATTGCAAGCTTCTTCTCATGGTCATCAAG 472
||||||||||||||||||||||||||| | | | | ||||| || |||| ||||||
Sbjct 419 ACTTTCCTCGGAAGGATGGTCCTGAAA-T-TGCT-C---CTTCT-CT--TGGTGATCAAG 469
Query 473 AAGGTGGAGAAGAGGGTTTGAAGAGTAAGCTTCCTTTTGAATTTCGGGTACTAGAGATTG 532
|||||||||||||||| ||| ||| |||||||||||||||||||| ||||||||||||||
Sbjct 470 AAGGTGGAGAAGAGGGCTTGGAGAATAAGCTTCCTTTTGAATTTCAGGTACTAGAGATTG 529
Query 533 CATTCGAGGTCTTCTGCTCATTTGTTGATAGCAATGTGGTAGACCTTGAGACACAAGCTT 592
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 530 CACTCGAGGTCGTCTGCTCATTTGTTGATAGCAATGTGGTAGACCTTGAGACACAAGCTT 589
Query 593 GGTCTATTCTTGATGAACTAACCAAGAAAGTCAGCAATGAGAATCTTAAAGACCTAAGAA 652
|||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |||
Sbjct 590 GGTCTATTCTTGATGAACTAACCAAGAAGGTCACCAATGAGAATCTTAAAGACCTACGAA 649
Query 653 GTTTAAAAACTAGTCTCACCCA-CTTGCTAGCCCGTGTACAAAAGGTGAGAGATGAAATC 711
||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 650 GTTTAAAAAGTAGTCTCACC-ATCTTGCTAGCCCGTGTACAAAAGGTGAGAGATGAAATC 708
Query 712 GAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTATACTTAACGAGGAAATGGATT 771
||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||
Sbjct 709 GAACATTTCTTAGATGACAAGGAAGACATGGAAGACTTACACTTAACAAGGAAATGTATT 768
Query 772 CAAAACCAACAAACCGAGGCAGCATCAAATAGCATTGTCTCCCAACCAAATCTTCAACGG 831
||||||||||||||||||||| ||||||||||||||||| ||| | || || ||
Sbjct 769 CAAAACCAACAAACCGAGGCACCATCAAATAGCATTGTC-CCC--C-AA-TC---AA--- 817
Query 832 CACACATCAAACAGAATAAGCACCAGTATGGTGACGGAGGAAGATGACATTGATGATATG 891
| | | || ||| || |||||||||||||||||||||||||| |||||||| ||
Sbjct 818 -A-AGA--AA---GAA---GCGCCAGTATGGTGACGGAGGAAGATGACGTTGATGATTTG 867
Query 892 GAGATGTTGCTTGAGGCATACTTCATGCAACTAGAGGGAATGCGGAACAAAATTCTTTTG 951
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 868 GAGATGTTGCTTGAGGCATACTTCATGCAACTAGAGGGAATGCAGAACAAAATTCTTATG 927
Query 952 ATGAAGGAGCATATTGACAGCACAGAAGCCTACGTGAAGATACTACAGAATAGTAGACGT 1011
||||||||||| ||||| || ||||||| ||||||||||||||||||||||||||||||
Sbjct 928 ATGAAGGAGCACATTGATGGCGCAGAAGCATACGTGAAGATACTACAGAATAGTAGACGT 987
Query 1012 AACGGACTGATCCACCTAATGATGCTTGTGAATATAGGCAATTATGCAATAACTGCAGGG 1071
||||||||| |||||||||||||| | |||||||||| ||||||||||||||| ||||||
Sbjct 988 AACGGACTGTTCCACCTAATGATGGTGGTGAATATAGCCAATTATGCAATAACAGCAGGG 1047
Query 1072 ACAGTGGTGGTCAACTTGTTCGGTATGAATATACCAATTGGATTGTATAGCACACCTGAC 1131
||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct 1048 ACAGTGGTGGTCAACTTGTTCGGTATGAACATACAAATTGGATTGTATAGCACACCTGAC 1107
Query 1132 ATCTTTGGTTACGTTGTGTGGGCTGTCGTTGCGCTTTGCATTGTGCTTTTCATAGTCACC 1191
|||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1108 ATCTTTGGTTACGTGGTGTGGGCTGTTGTTGCGCTTTGCATTGTGCTTTTCATGGTCACC 1167
Query 1192 GTTGGTTACGCCAAGTGGAAGAAGCTACTTGACTGATAAGAGACTAAACACATTAGGTTT 1251
|||||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 1168 CTTGGTTACGCCAAGCGTAAGAAGCTGCTTGACTGATCAGAGACTAAACACATTAGGTTT 1227
Query 1252 AGTCATTATGAGATTAGCTTTGTGG 1276
|||| |||| ||||||| |||||||
Sbjct 1228 AGTCTTTATAAGATTAGGTTTGTGG 1252
> Ahg487791 jgi|Araly1|487791|fgenesh2_kg.6__925__AT5G09690.1
Length=1474
Score = 58.4 bits (31), Expect = 1e-07
Identities = 52/62 (84%), Gaps = 1/62 (2%)
Strand=Plus/Plus
Query 860 TGGTGACGGAGGAAGATGACATTGATGATATGGAGATGTTGCTTGAGGCATACTTCATGC 919
||| ||| || ||| |||| |||| || | ||||||||||||||||||||||||||||
Sbjct 963 TGGGGAC-GATGAAAATGATGTTGAAGAGCTTGAGATGTTGCTTGAGGCATACTTCATGC 1021
Query 920 AA 921
||
Sbjct 1022 AA 1023
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47691769167
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5