BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28590.1
Length=1141
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491904 jgi|Araly1|491904|fgenesh2_kg.7__1337__AT4G28590.1 1565 0.0
> Ahg491904 jgi|Araly1|491904|fgenesh2_kg.7__1337__AT4G28590.1
Length=1128
Score = 1565 bits (847), Expect = 0.0
Identities = 1000/1071 (93%), Gaps = 22/1071 (2%)
Strand=Plus/Plus
Query 1 GAGAGAAATGAGTTTCTTCGCTGTTGCTTGCTCCGCGCCAAGATCTTCTATGCTTCTCAC 60
||||||||||||||||||| ||| ||||||||| |||||||||||||| |||||||||||
Sbjct 1 GAGAGAAATGAGTTTCTTCCCTGCTGCTTGCTCTGCGCCAAGATCTTCCATGCTTCTCAC 60
Query 61 CGGCTTGAATTCGAGCTTCTCTGATATGCATCGCAGCCCACTATTTGTTTTCCCGGT-GA 119
||||||||||||||||||||| ||| |||||||||| ||||||| ||||| || || ||
Sbjct 61 CGGCTTGAATTCGAGCTTCTCCGATGTGCATCGCAGTCCACTATCGGTTTTTCC-GTCGA 119
Query 120 CTATATCATCCCGGAGCGTGAAA----C-----GCTTCGCCGCTGTTTCGTCTGATTCCG 170
||||||||||||||||| |||| | || ||||||||||||||||||||||||
Sbjct 120 GTATATCATCCCGGAGCGGGAAATCTCCGGTATGCCTCGCCGCTGTTTCGTCTGATTCCG 179
Query 171 TA--CTA-GACCCTGAATCCAAAAATCAAACTCGGTCCCGTCGCAAAAATAAGGAAGCAG 227
|| | | || |||| |||||||||||||||||||||||||||| |||| ||||||| |
Sbjct 180 TACCCGACGAACCTGGATCCAAAAATCAAACTCGGTCCCGTCGCCAAAAGAAGGAAGTTG 239
Query 228 TTACGCCAATTGCTGAAACCGAGAACAATGAAAAGTTTCCGACAAAGGTCCCGCGTAAAT 287
| | || ||||||||||||||||||||||| ||||||||||| ||||||| ||||||||
Sbjct 240 TCGCACCGATTGCTGAAACCGAGAACAATGACAAGTTTCCGACGAAGGTCCGGCGTAAAT 299
Query 288 CGAAGCGTGGGCGGCGGAGTGAAGCAGACGCTGTGGAAGATTACGTGAGAAGCTCCCTCG 347
||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 300 CGAAGCGCGGGCGGCGGAGCGAAGCAGACGCCGTGGAAGATTACGTGAGAAGCTCCCTCG 359
Query 348 AGCGTACTTTCTCCACCATAAAG-GAGCAGAATCCGGAGGTTTTTGAGAACAAGGAGAAG 406
|| |||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||
Sbjct 360 AGAAAACTTTCTCCACCAT-AAGAGAGCAGAATCCGGAGGTTTTTGAGAACAAAGAGAAG 418
Query 407 GCGAATTTCATCAAAGACAGAGGCGTTGATg-a-a-gaagaggaagaagaagaagagatg 463
||||||||||||||||||||||||||||||| | | ||||| ||||||||||||||||||
Sbjct 419 GCGAATTTCATCAAAGACAGAGGCGTTGATGAAGAGGAAGAAGAAGAAGAAGAAGAGATG 478
Query 464 gtggtggaagaggaagaTCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GTGGTGGAAGAGGAAGATCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 538
Query 524 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGATGATGGGAGTGAG 583
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct 539 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGAAGATGGGACTGAG 598
Query 584 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 658
Query 644 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTTGTATTCGAGCGATACAAAAGA 703
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 659 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTCGTATTCGAGCGATACAAAAGG 718
Query 704 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 763
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 719 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 778
Query 764 GCGAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 823
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 779 GCAAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 838
Query 824 GCATATGCTCTTAAAGCTAAGGAATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 883
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 839 GCATATGCTCTTAAAGCTAAGGCATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 898
Query 884 CTGTACAGGGAGAAAGACTTTCGCACGGCGGATGAATTGGTTCATATGATTGCGCATTTC 943
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 899 CTGTATAGGGAGAAAGACTTTCGCACAGCGGATGAATTGGTTCATATGATTGCGCATTTC 958
Query 944 TACTATAAAGCGAAGAGGCCTTCGTGTGTCGACAAGGCTAATGTAACCCCGTACTGTTAG 1003
||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||
Sbjct 959 TACTATAAAGCGAAGAGACCTTCGTGGGTTGACAAGGCTAATGTAACCCCGTACTGTTAG 1018
Query 1004 TTTGTAACGGG--CATAGAGTAGTTTCACTCAAAAGGTCAGTCTAGGAAAA 1052
|||| | |||| || |||||||||||||||||| ||||||||||||||||
Sbjct 1019 TTTGCAGCGGGAACAGAGAGTAGTTTCACTCAAA-GGTCAGTCTAGGAAAA 1068
Score = 91.6 bits (49), Expect = 1e-17
Identities = 59/63 (94%), Gaps = 3/63 (5%)
Strand=Plus/Plus
Query 1081 AACATTTTTGTATGTTCTATGCAAATATAAACTTG-TTCCCAAGTAATGGATTTT-ACTC 1138
||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| ||||
Sbjct 1067 AACATTTTTGTATGTTCTATGCAAATATAAAGTTGGTTCCCAAGTAATG-ATTTTTACTC 1125
Query 1139 GTC 1141
|||
Sbjct 1126 GTC 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42545175372
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5