BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28590.1 Length=1141 Score E Sequences producing significant alignments: (Bits) Value Ahg491904 jgi|Araly1|491904|fgenesh2_kg.7__1337__AT4G28590.1 1565 0.0 > Ahg491904 jgi|Araly1|491904|fgenesh2_kg.7__1337__AT4G28590.1 Length=1128 Score = 1565 bits (847), Expect = 0.0 Identities = 1000/1071 (93%), Gaps = 22/1071 (2%) Strand=Plus/Plus Query 1 GAGAGAAATGAGTTTCTTCGCTGTTGCTTGCTCCGCGCCAAGATCTTCTATGCTTCTCAC 60 ||||||||||||||||||| ||| ||||||||| |||||||||||||| ||||||||||| Sbjct 1 GAGAGAAATGAGTTTCTTCCCTGCTGCTTGCTCTGCGCCAAGATCTTCCATGCTTCTCAC 60 Query 61 CGGCTTGAATTCGAGCTTCTCTGATATGCATCGCAGCCCACTATTTGTTTTCCCGGT-GA 119 ||||||||||||||||||||| ||| |||||||||| ||||||| ||||| || || || Sbjct 61 CGGCTTGAATTCGAGCTTCTCCGATGTGCATCGCAGTCCACTATCGGTTTTTCC-GTCGA 119 Query 120 CTATATCATCCCGGAGCGTGAAA----C-----GCTTCGCCGCTGTTTCGTCTGATTCCG 170 ||||||||||||||||| |||| | || |||||||||||||||||||||||| Sbjct 120 GTATATCATCCCGGAGCGGGAAATCTCCGGTATGCCTCGCCGCTGTTTCGTCTGATTCCG 179 Query 171 TA--CTA-GACCCTGAATCCAAAAATCAAACTCGGTCCCGTCGCAAAAATAAGGAAGCAG 227 || | | || |||| |||||||||||||||||||||||||||| |||| ||||||| | Sbjct 180 TACCCGACGAACCTGGATCCAAAAATCAAACTCGGTCCCGTCGCCAAAAGAAGGAAGTTG 239 Query 228 TTACGCCAATTGCTGAAACCGAGAACAATGAAAAGTTTCCGACAAAGGTCCCGCGTAAAT 287 | | || ||||||||||||||||||||||| ||||||||||| ||||||| |||||||| Sbjct 240 TCGCACCGATTGCTGAAACCGAGAACAATGACAAGTTTCCGACGAAGGTCCGGCGTAAAT 299 Query 288 CGAAGCGTGGGCGGCGGAGTGAAGCAGACGCTGTGGAAGATTACGTGAGAAGCTCCCTCG 347 ||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||| Sbjct 300 CGAAGCGCGGGCGGCGGAGCGAAGCAGACGCCGTGGAAGATTACGTGAGAAGCTCCCTCG 359 Query 348 AGCGTACTTTCTCCACCATAAAG-GAGCAGAATCCGGAGGTTTTTGAGAACAAGGAGAAG 406 || |||||||||||||| ||| ||||||||||||||||||||||||||||| |||||| Sbjct 360 AGAAAACTTTCTCCACCAT-AAGAGAGCAGAATCCGGAGGTTTTTGAGAACAAAGAGAAG 418 Query 407 GCGAATTTCATCAAAGACAGAGGCGTTGATg-a-a-gaagaggaagaagaagaagagatg 463 ||||||||||||||||||||||||||||||| | | ||||| |||||||||||||||||| Sbjct 419 GCGAATTTCATCAAAGACAGAGGCGTTGATGAAGAGGAAGAAGAAGAAGAAGAAGAGATG 478 Query 464 gtggtggaagaggaagaTCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 479 GTGGTGGAAGAGGAAGATCCAGATTGGCCAGTAGATACAGACGTTGGATGGGGAATCAAA 538 Query 524 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGATGATGGGAGTGAG 583 ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| Sbjct 539 GCTTCGGAGTATTTCGATACACATCCAATCAAAAACGTGGTTGGAGAAGATGGGACTGAG 598 Query 584 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 599 ATTGATTGGGAAGGTGAGATTGATGATAGTTGGGTCAAGGAGATCAATTGTTTGGAATGG 658 Query 644 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTTGTATTCGAGCGATACAAAAGA 703 |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 659 GAAAGCTTTGCTTTTCATCCTAGTCCACTCGTTGTCCTCGTATTCGAGCGATACAAAAGG 718 Query 704 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 763 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 719 GCTAGTGATAACTGGAAGACATTGAAGGAGCTTGAGAAAGCTATCAAAGTTTATTGGGAT 778 Query 764 GCGAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 823 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 779 GCAAAAGATCGATTACCTCCACGGGCGGTTAAGATTGACCTGAACATCGAGACAGATTTG 838 Query 824 GCATATGCTCTTAAAGCTAAGGAATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 883 |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 839 GCATATGCTCTTAAAGCTAAGGCATGCCCACAGATTCTCTTCTTACGCGGAAACCGGATT 898 Query 884 CTGTACAGGGAGAAAGACTTTCGCACGGCGGATGAATTGGTTCATATGATTGCGCATTTC 943 ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 899 CTGTATAGGGAGAAAGACTTTCGCACAGCGGATGAATTGGTTCATATGATTGCGCATTTC 958 Query 944 TACTATAAAGCGAAGAGGCCTTCGTGTGTCGACAAGGCTAATGTAACCCCGTACTGTTAG 1003 ||||||||||||||||| |||||||| || |||||||||||||||||||||||||||||| Sbjct 959 TACTATAAAGCGAAGAGACCTTCGTGGGTTGACAAGGCTAATGTAACCCCGTACTGTTAG 1018 Query 1004 TTTGTAACGGG--CATAGAGTAGTTTCACTCAAAAGGTCAGTCTAGGAAAA 1052 |||| | |||| || |||||||||||||||||| |||||||||||||||| Sbjct 1019 TTTGCAGCGGGAACAGAGAGTAGTTTCACTCAAA-GGTCAGTCTAGGAAAA 1068 Score = 91.6 bits (49), Expect = 1e-17 Identities = 59/63 (94%), Gaps = 3/63 (5%) Strand=Plus/Plus Query 1081 AACATTTTTGTATGTTCTATGCAAATATAAACTTG-TTCCCAAGTAATGGATTTT-ACTC 1138 ||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||| |||| Sbjct 1067 AACATTTTTGTATGTTCTATGCAAATATAAAGTTGGTTCCCAAGTAATG-ATTTTTACTC 1125 Query 1139 GTC 1141 ||| Sbjct 1126 GTC 1128 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42545175372 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5