BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28600.1 Length=2731 Score E Sequences producing significant alignments: (Bits) Value Ahg328837 jgi|Araly1|328837|fgenesh1_pm.C_scaffold_7001064 3469 0.0 > Ahg328837 jgi|Araly1|328837|fgenesh1_pm.C_scaffold_7001064 Length=2220 Score = 3469 bits (1878), Expect = 0.0 Identities = 2108/2222 (95%), Gaps = 4/2222 (0%) Strand=Plus/Plus Query 312 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGT-AAACTAAGAAAAAGTTT 370 |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| Sbjct 1 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGTGAAA-TAAGAAAAAGTTT 59 Query 371 GAGGAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAACAAATGAGGCATAGAGAAGAAGA 430 ||| |||||||||||||||||||||||||||||||| |||||||| | |||||| || || Sbjct 60 GAGAAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAGCAAATGAGACTTAGAGAGGATGA 119 Query 431 AGACAAGAAATCTGAGGTTGGAGTTGGTAGAGACTACAATGGAAGCTCAGCTTTATCGAC 490 ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || Sbjct 120 AGACAAGAAATCTGACCTTGGAGTTGGCAGAGACTACAATGGAAGCTCAGCTTTATCCAC 179 Query 491 CGCAGAAAGCGAGAATGCTAAGAAACTAGATAATGGAAATATCGAAGAAGCCGAGTTATC 550 |||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| Sbjct 180 CGCAGACAGCGAGAATGCCAAGAAACTAGATAATGGGAATATTGAAGAAGCCGAGTTATC 239 Query 551 TCTGCGTGAGACGAGTTCATTGAACTACGAGGAGGCGAGAGCGCTTTTGGGAAGAATTGA 610 |||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 240 TCTGCGTGAGACGAGTTCGTTGAACTACGAGGAGGCGAGAGCACTTTTGGGAAGAATTGA 299 Query 611 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 670 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 300 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 359 Query 671 TATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGAAGACCGGAAACATAGAAGACG 730 |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||| Sbjct 360 GATCACAATAAAGATGAAAACCACTCTAACCGTTAGAGAAGAACGGAAACATAGAAGACG 419 Query 731 GTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCTAAACATGCTGTTAGTTT 790 |||||||||||||||| || || ||||| | ||| | ||||||||||||||||||||||| Sbjct 420 GTCTAAAGGCGGCTTTGCTGCTACTCCTCCGCCTTCGATGTCTAAACATGCTGTTAGTTT 479 Query 791 ACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTGGAAGGTTCCAAGA 850 |||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||| Sbjct 480 GCTTTTCGAAGCTATTTTTCTCAAAGCAAAATCTCTCCAGCGTCTTGGAAGGTTTCAAGA 539 Query 851 AGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 910 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 540 AGCTGCGCAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 599 Query 911 GTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTTGAGCT 970 |||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 600 GTCGGATAATGTGACTGGCGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTCGAGCT 659 Query 971 GCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAAG 1030 ||||||||| |||||||||||||||||||| || ||||||||||||||||| |||||||| Sbjct 660 GCTTCCTGAATTGTGGAAGCTTGCTGATTCGCCGCGTGATGCTATTTTGTCATATAGAAG 719 Query 1031 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTA 1090 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 720 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATCCAGAAAGAGTA 779 Query 1091 CGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGAC 1150 || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 780 TGCCGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCACCAAACCTACGTTCTCAGAC 839 Query 1151 TGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACT 1210 ||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 840 TGAAGGCTCGTTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTAATGTTACT 899 Query 1211 TCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC 1270 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 900 TCTCAGGAAAGTTAATCTGAAAAGAATCTCGTGGGATGCGGCAATCTTGGACCATCTCTC 959 Query 1271 GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAG 1330 |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| Sbjct 960 GTTCGCTCTTACAATCGCAGGCGATCTAACTGCTCTGGCTAAGCAATTTGAAGAGCTTAG 1019 Query 1331 TCCTGAGCTCT-TGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTG 1389 ||| ||||||| || ||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct 1020 TCCCGAGCTCTATG-ATCAGAGGGAACTTTATCATACATTGTCTCTCTGTTATCAAGGTG 1078 Query 1390 CAGGAGAAGGTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1449 |||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||| Sbjct 1079 CAGGAGAAGGTCTTGTCGCGCTCGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1138 Query 1450 CAAACAGGACTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTG 1509 | ||| | | ||||||||||||||||||||||||||||||||||||||| |||||||| | Sbjct 1139 CTAACCGAATTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGATCTGGTCTCG 1198 Query 1510 CTGAGGAAGGGTTAGATTATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTC 1569 |||||||||| |||||||||||||||| ||| ||||| ||||||||||| |||||||||| Sbjct 1199 CTGAGGAAGGATTAGATTATGCCCGGAGAGCAATCGGGAACTTGGGGAACGAATGCAGTC 1258 Query 1570 AATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGG 1629 | ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 1259 AGTTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACACTCACGGAAAGCTCGAGAATGG 1318 Query 1630 CTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTG 1689 ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 1319 CTGTTACAGAGACTGAGCGGATAGCTAGGCAATCCGAGGGGATTCAGGCTCTGGAATCTG 1378 Query 1690 CAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1749 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1379 CTGATATGACAAACCCGAGAGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1438 Query 1750 AACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAGCAGAGTCTGATC 1809 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 1439 AACTGGATTCTGCATTAGCATATGCTAAACAGGCGTTGAAACTTGGAGCGGAGTCTGATC 1498 Query 1810 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTCAGACGCGG 1869 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1499 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCGCAGAAGCGGTTTTCAGACGCAG 1558 Query 1870 AGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1929 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1559 AGACCATTGTGGATGCGGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1618 Query 1930 GTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA 1989 |||||||||||||| |||| ||||||||||| ||||||||||||||||||| |||||||| Sbjct 1619 GTTTGAAGGCAAAGATTCGCTTAGCTAAAGGGGAAGTGAAAGATGCGATTACGACTTACA 1678 Query 1990 CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 2049 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 1679 CACAACTTCTAGCACTCCTTCAGGTTCAGAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 1738 Query 2050 CTAAGGGATATGTAAAGGAATTGATGAGTCTGGAGCTTGGGACGTGGCACGATCTGGCTC 2109 |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||||||||| Sbjct 1739 CTAAGGGATATGTAGAGGAATTGAGGAGTCTGGAGCTTGGTACGTGGCACGATCTGGCTC 1798 Query 2110 ATATTTACATAAACCTCTCGCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 2169 |||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1799 ATATCTACATAAACCTCTCTCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 1858 Query 2170 TCATTGCACCTTACTCTTCTGTTAGATACCACATTGAAGGTGTACTGTACAATAGACGGG 2229 ||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| || Sbjct 1859 TCATTGCGCCTTACTCTTCTGTTAGATACCACACTGAAGGTGTACTGCACAATAGACAGG 1918 Query 2230 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGACATAGATCCGATGCACG 2289 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1919 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGATATAGATCCGATGCACG 1978 Query 2290 TCCCAAGCTTAACATCGAAGGCTGAGATACTGCTGGAGGTCGGTAACCGATCAGGCATAG 2349 | |||||||||| ||||||||||||||| |||||||| |||| || ||||||||||||| Sbjct 1979 TTCCAAGCTTAATATCGAAGGCTGAGATCCTGCTGGAACTCGGGAATCGATCAGGCATAG 2038 Query 2350 CGGTTGTTAGAAGCTTTCTAATGGAGGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2409 ||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 2039 CGGTTGTAAGAAGCTTTCTAATGGAAGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2098 Query 2410 GGTACAATCTTGGAAAGATGTTCAAAGCTGAAGGGTCCGTCTCGTCGATGCAAGAAGCCG 2469 |||| ||||||||||||||||||||||||||||| || |||||||| ||||||||||||| Sbjct 2099 GGTATAATCTTGGAAAGATGTTCAAAGCTGAAGGATCTGTCTCGTCAATGCAAGAAGCCG 2158 Query 2470 TTGAGTGTTTTCAAGCCGCCGTTACTTTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2529 | ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| Sbjct 2159 TCGAGTGTTTTCAAGCCGCTGTTACACTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2218 Query 2530 GA 2531 || Sbjct 2219 GA 2220 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 103034112725 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5