BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28600.1
Length=2731
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328837 jgi|Araly1|328837|fgenesh1_pm.C_scaffold_7001064 3469 0.0
> Ahg328837 jgi|Araly1|328837|fgenesh1_pm.C_scaffold_7001064
Length=2220
Score = 3469 bits (1878), Expect = 0.0
Identities = 2108/2222 (95%), Gaps = 4/2222 (0%)
Strand=Plus/Plus
Query 312 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGT-AAACTAAGAAAAAGTTT 370
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct 1 ATGAAGAACAGCGAGATTAGGCCTGAGAAGTTGCATTTACGTGAAA-TAAGAAAAAGTTT 59
Query 371 GAGGAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAACAAATGAGGCATAGAGAAGAAGA 430
||| |||||||||||||||||||||||||||||||| |||||||| | |||||| || ||
Sbjct 60 GAGAAAGATCAGAATGAAGTGTTTGTGTTCTGGTGAGCAAATGAGACTTAGAGAGGATGA 119
Query 431 AGACAAGAAATCTGAGGTTGGAGTTGGTAGAGACTACAATGGAAGCTCAGCTTTATCGAC 490
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 120 AGACAAGAAATCTGACCTTGGAGTTGGCAGAGACTACAATGGAAGCTCAGCTTTATCCAC 179
Query 491 CGCAGAAAGCGAGAATGCTAAGAAACTAGATAATGGAAATATCGAAGAAGCCGAGTTATC 550
|||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||
Sbjct 180 CGCAGACAGCGAGAATGCCAAGAAACTAGATAATGGGAATATTGAAGAAGCCGAGTTATC 239
Query 551 TCTGCGTGAGACGAGTTCATTGAACTACGAGGAGGCGAGAGCGCTTTTGGGAAGAATTGA 610
|||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 TCTGCGTGAGACGAGTTCGTTGAACTACGAGGAGGCGAGAGCACTTTTGGGAAGAATTGA 299
Query 611 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 670
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTATCAGAAAGGAAATATAGAGGCGGCATTGCGAGTCTTTGAAGGGATAGATATCAATGG 359
Query 671 TATCACAGTAAAGATGAAAACCGCTCTAACCGTTAGAGAAGACCGGAAACATAGAAGACG 730
|||||| |||||||||||||| ||||||||||||||||||| |||||||||||||||||
Sbjct 360 GATCACAATAAAGATGAAAACCACTCTAACCGTTAGAGAAGAACGGAAACATAGAAGACG 419
Query 731 GTCTAAAGGCGGCTTTTCTACTGCTCCTTCACCTGCCATGTCTAAACATGCTGTTAGTTT 790
|||||||||||||||| || || ||||| | ||| | |||||||||||||||||||||||
Sbjct 420 GTCTAAAGGCGGCTTTGCTGCTACTCCTCCGCCTTCGATGTCTAAACATGCTGTTAGTTT 479
Query 791 ACTTTTCGAAGCTATTTTTCTCAAAGCCAAGTCTCTCCAGCGTCTTGGAAGGTTCCAAGA 850
|||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 480 GCTTTTCGAAGCTATTTTTCTCAAAGCAAAATCTCTCCAGCGTCTTGGAAGGTTTCAAGA 539
Query 851 AGCTGCGGAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 910
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 AGCTGCGCAGTCTTGCAGAGTTATTCTTGATATAGTCGAGACTTCTTTAGCAGAAGGTGC 599
Query 911 GTCGGATAATGTGACTGGAGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTTGAGCT 970
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 600 GTCGGATAATGTGACTGGCGATATTAAGTTGCAGGAGACACTGACAAAAGCGGTCGAGCT 659
Query 971 GCTTCCTGAGTTGTGGAAGCTTGCTGATTCACCTCGTGATGCTATTTTGTCGTATAGAAG 1030
||||||||| |||||||||||||||||||| || ||||||||||||||||| ||||||||
Sbjct 660 GCTTCCTGAATTGTGGAAGCTTGCTGATTCGCCGCGTGATGCTATTTTGTCATATAGAAG 719
Query 1031 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATACAGAAAGAGTA 1090
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 AGCGCTTCTCAATCACTGGAAACTCGATCCAGAAACCACGGCGAGGATCCAGAAAGAGTA 779
Query 1091 CGCAGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCGCCAAACCTACGTTCTCAGAC 1150
|| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 780 TGCCGTGTTTCTCCTCTATTCCGGGGAAGAAGCAGTGCCACCAAACCTACGTTCTCAGAC 839
Query 1151 TGAGGGCTCATTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTGATGTTACT 1210
||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 840 TGAAGGCTCGTTCATTCCGAGGAACAATGTGGAAGAAGCTATTCTTCTTCTAATGTTACT 899
Query 1211 TCTCAGGAAAGTTAATCTGAAAAGAATCTCATGGGATGCGGCAATCTTGGACCATCTCTC 1270
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 900 TCTCAGGAAAGTTAATCTGAAAAGAATCTCGTGGGATGCGGCAATCTTGGACCATCTCTC 959
Query 1271 GTTCGCTCTTACAATCGCAGGCGATCTAACCGCTCTGGCTAAGCAGTTTGAAGAGCTTAG 1330
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 960 GTTCGCTCTTACAATCGCAGGCGATCTAACTGCTCTGGCTAAGCAATTTGAAGAGCTTAG 1019
Query 1331 TCCTGAGCTCT-TGGATCAGAGGGAACTTTATCATACATTGTCTTTGTGTTACCAAGGTG 1389
||| ||||||| || ||||||||||||||||||||||||||||| | ||||| |||||||
Sbjct 1020 TCCCGAGCTCTATG-ATCAGAGGGAACTTTATCATACATTGTCTCTCTGTTATCAAGGTG 1078
Query 1390 CAGGAGAAGGTCTTGTTGCGTTAGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1449
|||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1079 CAGGAGAAGGTCTTGTCGCGCTCGGTTTACTGAGGAAGCTATTTTCAGAACGAGAGGATC 1138
Query 1450 CAAACAGGACTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGGTCTGGTCTTG 1509
| ||| | | ||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1139 CTAACCGAATTTCGGGTTTGCTGATGGCTTCCAAAATATGCGGTGAGAGATCTGGTCTCG 1198
Query 1510 CTGAGGAAGGGTTAGATTATGCCCGGAAAGCTATCGGAAACTTGGGGAAGGAATGCAGTC 1569
|||||||||| |||||||||||||||| ||| ||||| ||||||||||| ||||||||||
Sbjct 1199 CTGAGGAAGGATTAGATTATGCCCGGAGAGCAATCGGGAACTTGGGGAACGAATGCAGTC 1258
Query 1570 AATTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACGCTCACGGAAAGCTCTAGAATGG 1629
| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 1259 AGTTAGATGGAGCAGCGCGTTTCGTTTTAGGGATCACACTCACGGAAAGCTCGAGAATGG 1318
Query 1630 CTGTTACAGAGACTGAGAGGATAGCTAGGCAATCCGAGGGGATTCAGGCCCTGGAATCTG 1689
||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1319 CTGTTACAGAGACTGAGCGGATAGCTAGGCAATCCGAGGGGATTCAGGCTCTGGAATCTG 1378
Query 1690 CAGATATGACAAACCCGAGGGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1749
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1379 CTGATATGACAAACCCGAGAGTTGTGCACCGTCTTGCGTTGGAGAATGCAGAACAGAGGA 1438
Query 1750 AACTGGATTCTGCATTAGCATATGCTAAAGAGGCGTTGAAACTTGGAGCAGAGTCTGATC 1809
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 1439 AACTGGATTCTGCATTAGCATATGCTAAACAGGCGTTGAAACTTGGAGCGGAGTCTGATC 1498
Query 1810 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCACAGAAGCGGTTTTCAGACGCGG 1869
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1499 TTGAAGTATGGTTACTTTTGGCTCGGGTTTTATCTGCGCAGAAGCGGTTTTCAGACGCAG 1558
Query 1870 AGACCATTGTGGATGCAGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1929
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1559 AGACCATTGTGGATGCGGCGCTTAACGAGACAGGGAAATGGGAACAGGGGAAGCTGTTAC 1618
Query 1930 GTTTGAAGGCAAAGCTTCGTTTAGCTAAAGGAGAAGTGAAAGATGCGATTAAGACTTACA 1989
|||||||||||||| |||| ||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1619 GTTTGAAGGCAAAGATTCGCTTAGCTAAAGGGGAAGTGAAAGATGCGATTACGACTTACA 1678
Query 1990 CACAACTTCTAGCACTCCTTCAGGTTCAAAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 2049
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1679 CACAACTTCTAGCACTCCTTCAGGTTCAGAGCAAAAGCTTCAATTCTGCAAAGAAGCTGC 1738
Query 2050 CTAAGGGATATGTAAAGGAATTGATGAGTCTGGAGCTTGGGACGTGGCACGATCTGGCTC 2109
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1739 CTAAGGGATATGTAGAGGAATTGAGGAGTCTGGAGCTTGGTACGTGGCACGATCTGGCTC 1798
Query 2110 ATATTTACATAAACCTCTCGCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 2169
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1799 ATATCTACATAAACCTCTCTCAATGGCGTGACGCAGAGTCATGTCTCTCGAGATCAAGAC 1858
Query 2170 TCATTGCACCTTACTCTTCTGTTAGATACCACATTGAAGGTGTACTGTACAATAGACGGG 2229
||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||| ||
Sbjct 1859 TCATTGCGCCTTACTCTTCTGTTAGATACCACACTGAAGGTGTACTGCACAATAGACAGG 1918
Query 2230 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGACATAGATCCGATGCACG 2289
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1919 GGCAATTAGAAGAAGCAATGGAGGCGTTCACAACCGCTCTTGATATAGATCCGATGCACG 1978
Query 2290 TCCCAAGCTTAACATCGAAGGCTGAGATACTGCTGGAGGTCGGTAACCGATCAGGCATAG 2349
| |||||||||| ||||||||||||||| |||||||| |||| || |||||||||||||
Sbjct 1979 TTCCAAGCTTAATATCGAAGGCTGAGATCCTGCTGGAACTCGGGAATCGATCAGGCATAG 2038
Query 2350 CGGTTGTTAGAAGCTTTCTAATGGAGGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2409
||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2039 CGGTTGTAAGAAGCTTTCTAATGGAAGCTCTTAGGATTGATAGGCTGAACCACTCGGCTT 2098
Query 2410 GGTACAATCTTGGAAAGATGTTCAAAGCTGAAGGGTCCGTCTCGTCGATGCAAGAAGCCG 2469
|||| ||||||||||||||||||||||||||||| || |||||||| |||||||||||||
Sbjct 2099 GGTATAATCTTGGAAAGATGTTCAAAGCTGAAGGATCTGTCTCGTCAATGCAAGAAGCCG 2158
Query 2470 TTGAGTGTTTTCAAGCCGCCGTTACTTTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2529
| ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 2159 TCGAGTGTTTTCAAGCCGCTGTTACACTGGAGGAAACAATGCCAGTGGAGCCATTCAGAT 2218
Query 2530 GA 2531
||
Sbjct 2219 GA 2220
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 103034112725
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5