BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28610.1
Length=1693
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491902 jgi|Araly1|491902|fgenesh2_kg.7__1335__AT4G28610.1 2137 0.0
> Ahg491902 jgi|Araly1|491902|fgenesh2_kg.7__1335__AT4G28610.1
Length=1548
Score = 2137 bits (1157), Expect = 0.0
Identities = 1443/1571 (92%), Gaps = 59/1571 (4%)
Strand=Plus/Plus
Query 147 AGGACAACAATGGAGGCTCGTCCAGTTCATAGATCAGGTTC------G---AG-AG--AC 194
|||||| |||||||||||||||| || || ||||||||||| | || || ||
Sbjct 1 AGGACAGCAATGGAGGCTCGTCCGGTACAGAGATCAGGTTCGAGAGAGCTCAGTAGTAAC 60
Query 195 CTCACACGCACTTCTTCAATCCCATCTACACAAAAACCTTCACCAGTAGAAGATAGTTTC 254
||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 61 CTCGCACGCACTTCTTCAATCCCATCTACACAAAAACCTTCAGCAGCAGAAGATAGTTTT 120
Query 255 ATGAGATCAGATAACAACAGTCAGTTAATGTCTAGACCA-TTAGGACAAACCTACCATTT 313
|| ||| |||| ||||||| |||||||||||| || || ||||||||| ||||||||||
Sbjct 121 ATCAGACCAGAGAACAACACTCAGTTAATGTCGAG-GCAGTTAGGACAATCCTACCATTT 179
Query 314 ACTTTCATCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCAT-C--TGG 370
|||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 180 ACTTTCCTCTAGTAACGGTGGAGCTGTTGGACATATATGTTCTTCTTCATCATCCGGTGG 239
Query 371 TTT-TGC-AACCAATCTCCATTACTCAACTATGGTATCTCATGAGAAACAACAACACTAC 428
||| | | || ||||||||||||||| |||||||||||||||||| | | ||||| |||
Sbjct 240 TTTCT-CGAA-CAATCTCCATTACTCGACTATGGTATCTCATGAG--A-AGCAACATTAC 294
Query 429 ACAGGAAGCAGCAGTAATAATGCTGTGCAGACACCAAGCAACAACGATAGTGCTTGGTGT 488
||||||||||||| | |||||| ||||||||| | | |||||||||| ||||||||
Sbjct 295 GCAGGAAGCAGCAG---TCATGCTGCGCAGACACC--G-AGCAACGATAGTTCTTGGTGT 348
Query 489 CATGATTCATTGCC---AGGAGGGTTTCTTGACTTCCATG-AAAC--CAACCCGGCGATT 542
|||||||||||||| ||||||||||||||| ||||||| |||| |||||| || |||
Sbjct 349 CATGATTCATTGCCAGGAGGAGGGTTTCTTGATTTCCATGAAAACAACAACCCTGCCATT 408
Query 543 CAAAACAACTGTCAGATTGAGGATGGTGGCATTGCGGCTGCTTTTGATGACATTCAAAAA 602
||||||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 409 CAAAACAACAGTCAAATTGAGGATGGTGGCATTGCTGCTGCCTTTGATGACATTCAAAAA 468
Query 603 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACTGATGATGATCCTTTGATGTCT 662
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 469 CGAAGTGATTGGCATGAATGGGCTGACCATTTGATCACCGATGAAGATCCTTTGATGTCT 528
Query 663 ACTAACTGGAATGATCTCTTGCTTGAAACAAATTCCAATTCAGATTCAAAGGACCAGAAG 722
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 529 ACTAACTGGAATGATCTCTTGCTTGAAACAAGTTCCAATTCAGATTCAAAGGACCAGAA- 587
Query 723 A-CACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCTCCGTCTGTGGAATT 781
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 588 ATCACTGCAAATTCCGCAACCTCAGATTGTTCAGCAGCAACCTTCGCCGTCTGTGGAATT 647
Query 782 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGCAAGGCACGAATGCG 841
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 648 GCGACCTGTTAGCACAACATCTTCAAACAGCAATAACGGAACGGGTAAGGCACGTATGCG 707
Query 842 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAACAGTCTTGGCGGTAGTGA 901
|||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 708 TTGGACGCCAGAGCTTCACGAGGCTTTTGTTGAGGCTGTCAATAGTCTTGGTGGCAGTGA 767
Query 902 AAGAGCTACTCCTAAAGGGGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATATATCA 961
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||
Sbjct 768 AAGAGCTACTCCTAAAGGCGTACTGAAGATTATGAAAGTTGAAGGCTTGACTATTTATCA 827
Query 962 TGTTAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 1021
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 828 TGTCAAAAGCCATTTACAGAAATATAGGACAGCTAGATATCGGCCAGAACCATCAGAAAC 887
Query 1022 TGGTTCGCCAGA-AAGGAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 1080
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 888 TGGTTCGCCAGAGAA-GAAGTTGACACCGCTTGAACATATAACATCTCTTGATTTGAAAG 946
Query 1081 GTGGGATAGGTATTACAGAGGCTCTACGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1140
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 947 GTGGGATAGGTATTACAGAGGCTCTGCGACTTCAGATGGAAGTACAGAAGCAACTCCATG 1006
Query 1141 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1007 AGCAGCTCGAGATTCAAAGAAACCTGCAACTCCGAATAGAAGAACAAGGCAAGTACCTGC 1066
Query 1201 AAATGATGTTCGAGAAGCAAAACTCTGG-TCTTACCAAAGGGACAGCCTCAACATCAGAT 1259
|||||||||||||||| |||||||| || |||| |||||||||||||||| |||||||||
Sbjct 1067 AAATGATGTTCGAGAAACAAAACTC-GGATCTTGCCAAAGGGACAGCCTCGACATCAGAT 1125
Query 1260 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAGACTGCTGATTCGAAGGAGGTTC-CAGA 1318
|||||||||||||||||||||||||||||||| ||||||||| | |||||| | | ||
Sbjct 1126 TCCGCAGCCAAATCTGAACAAGAAGACAAGAAAACTGCTGATACAAAGGAGCT-CGCATC 1184
Query 1319 AGAAGAAACCAGGAAATGTGAGGAACTAGAATCTCCACAGCCAAAGCGTCCCAAAATCGA 1378
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 1185 AGAAGAAACCAGGAAATGTGAGGAACCAGAATCTCCACAGCCAAAGCGTCCCAAAACCGA 1244
Query 1379 TAATTGAAAGTATTGGTCTTTTGCTGGATAATCTCGGAGTTTCAGAGTT-AACAGTGATA 1437
|||||||||| ||| || |||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1245 TAATTGAAAGAATTAGTGTTTTGCTGGATAATCTTGGAGTTTCAGAGTTTAACAGTGAGA 1304
Query 1438 GAGAGA-ACGAGCTCTTATCTTGAGGTTCTTCAGGACTTCTCTCTTTACTGTTTAACTAT 1496
|||||| | |||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 1305 GAGAGAGA-GAGCTCTTATCTTGAG---CTTCAGGACTTCTCTCGCTACTGTTTAACTAT 1360
Query 1497 TTTTCTGATGGAAGACTCTC--AACTCAGCTGTGTAGACAAA-CAACAGATCCCCAAGGA 1553
|||||||||||||||||||| |||||||||||||||||||| |||||||||||| || |
Sbjct 1361 TTTTCTGATGGAAGACTCTCTCAACTCAGCTGTGTAGACAAAACAACAGATCCCCGAGAA 1420
Query 1554 AGaaacaaaacaaaaataaaaaGTT-AGTTTGGGAGAATCTTCATCATTC-AGTGTAATC 1611
|||||||||||||||||||| |||| |||||||||||||||||||||||| | |||||||
Sbjct 1421 AGAAACAAAACAAAAATAAAGAGTTTAGTTTGGGAGAATCTTCATCATTCGAATGTAATC 1480
Query 1612 TAAATGCTTAACTCATCATTAGTTTTACAGCTACAGATTTCTTATGTTAA-TCTTTTTTA 1670
|||||||||||||||| | |||||||| | ||||||||||||||||||| |||||||||
Sbjct 1481 TAAATGCTTAACTCAT--T-AGTTTTACCGATACAGATTTCTTATGTTAAATCTTTTTTA 1537
Query 1671 GAATATCAAAC 1681
|||||| ||||
Sbjct 1538 GAATATTAAAC 1548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63496438415
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5