BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28620.1
Length=2043
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1 2305 0.0
Ahg491901 jgi|Araly1|491901|fgenesh2_kg.7__1334__AT4G28620.1 1664 0.0
> Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1
Length=2107
Score = 2305 bits (1248), Expect = 0.0
Identities = 1633/1821 (90%), Gaps = 18/1821 (1%)
Strand=Plus/Plus
Query 235 AAAATCAACAGGACGTCGTCGGAGAATATCCTTCGGATGATTTCAAGCTATCTATGGATG 294
|||||||||| ||||||||| | || ||||| || | ||||||||||||||||||||||
Sbjct 244 AAAATCAACACGACGTCGTCTCAAAAGATCCTCCGCACGATTTCAAGCTATCTATGGATG 303
Query 295 AAAGACAACCCAAAACTCTGTTTCAGAGTCATCTCTGCTTTTGCGTGTCTCGTGGGAGCT 354
|||||||||||| ||||| | |||||||||||| ||||||| |||||||| | ||||||
Sbjct 304 AAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCTATTAGGAGCT 363
Query 355 AAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAAGTAGCTATAGATTGGCTCTCTTCA 414
|||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||
Sbjct 364 AAGTTCTTGAATGTTCAATTTCCTTTCCTCTTCAAAGTAGCTATCGATTTACTCTCTTCA 423
Query 415 TCTTCAT------TCGTTGATTCAAACCCTTACCTAGTTGCTGCTTTCGCTACTCCTTCC 468
||||||| ||| ||||||||| | ||| || ||||||||||||||||||||||
Sbjct 424 TCTTCATCAACAATCGCTGATTCAAATCTTTATCTTCTTGCTGCTTTCGCTACTCCTTCT 483
Query 469 TCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGTTCTTCTGCTTTCAACGAGCTTCGT 528
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 484 TCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCTGCTTTTAACGAGCTTCGT 543
Query 529 ACTAG-TGTTTTCTCCAAAGTAGCTCTCCGCACCATACGAACCATCTCTAGAAAAGTTCT 587
| | | ||||||||| ||||||||||||||||| |||||| || | ||| | ||||| ||
Sbjct 544 AGT-GCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTTCTCGTAAAGTGCT 602
Query 588 CTCGCGTTTACACGATCTCGATCTTCGTTACCATCTAAATAGAGACACAGGTGCTTTGAA 647
||||| |||||||||||| ||||||||||||||| | ||| |||| ||||| ||||||||
Sbjct 603 CTCGCATTTACACGATCTTGATCTTCGTTACCATTTGAATCGAGAAACAGGAGCTTTGAA 662
Query 648 CAGAATCATTGATCGTGGAAGCCGCGCTATAAACACGATTCTCTCAGCTATGGTTTTCAA 707
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 663 TAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAGCTATGGTTTTCAA 722
Query 708 CATTATGCCCACGATCTTGGAGATATCAATGGTCTCATGTATATTAGCATACAAATTTGG 767
|| | || ||||||||||||||||| |||||| || |||||||||||||||| |||||
Sbjct 723 TGTTGTTCCAACGATCTTGGAGATATCTATGGTCACAGGTATATTAGCATACAATTTTGG 782
Query 768 AGCTGTTTATGCATTGATTACTTGTCTTTCTGTTGGATCATATATAGCATTCACGTTGGC 827
| |||||| ||| ||||| |||| |||||| ||||||||||| || || ||||| ||||
Sbjct 783 ACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTGCTTTCACATTGGT 842
Query 828 TATGACGCAGTGGAGAATC-AAGATTAGAAAAGCTATGAATGAAGCTGAAAACGATGCTA 886
| |||| || ||||||| | ||| ||||| |||||||||| ||||||| || |||||||
Sbjct 843 TGTGACACAATGGAGAA-CTAAGTTTAGATTAGCTATGAATAAAGCTGATAATGATGCTA 901
Query 887 GCACCAGAGCCATTGACTCTCTCATAAACTACGAGACTGTTAAGTATTTCAACAACGAAG 946
|||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||||
Sbjct 902 GCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATTTCAATAACGAAG 961
Query 947 ATTACGAAGCTCGAAAGTACGATCAGTTACACGAAA-ATTACGAAGATGCTGCATTGCAA 1005
||||||||| ||||||||||| | |||| ||||| | || |||||||||||||||| |
Sbjct 962 ATTACGAAGGGAGAAAGTACGATGATTTACTCGAAAGA-TATGAAGATGCTGCATTGCGA 1020
Query 1006 AGTCGGAAAAGCT-TTGCCTTATTAAATTTTGGACAGAGTTTTATATTTAGTACAGCTTT 1064
| || |||||| | ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 1021 ACTCAGAAAAG-TCTTGCCTTTTTAGATTTTGGACAGAGTTTTATATTTAGTACAGCTTT 1079
Query 1065 GTCAACAGCAATGGTGTTGTGTTCTCAGGGGATTATGAATGGTCAGATGACAGTTGGTGA 1124
||||||| ||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 1080 GTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGACAGTTGGTGA 1139
Query 1125 TTTGGTGATGGTGAATGGTCTCCTCTTTCAACTGTCTCTTCCTCTTTACTTTCTCGG-GG 1183
||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || ||
Sbjct 1140 TTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTTGGTGG 1199
Query 1184 TTGTTTACAGCGACACCGTTCAGGGACTTGTCGACATGAAATCGATGTTTAAGTTTCTAG 1243
| |||||| |||| ||||||||| | ||| | || |||||||| ||||| |||| ||||
Sbjct 1200 T-GTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCCAGTTGCTAG 1258
Query 1244 AGGAGAGATCTGATATCGGAGATAAAGATATAGACAGGAAGCTCCCTCCTCTTGTTCTGA 1303
|||||||||| ||||||||||||||||||| | | | ||||| |||| |||||||||||
Sbjct 1259 AGGAGAGATCCGATATCGGAGATAAAGATACAAATACAAAGCTTCCTCTTCTTGTTCTGA 1318
Query 1304 AAGGTGGAAGCATTAGTTTTGAGAATGTACATTTTAGTTATCTACCGGAGAGAAAGATTT 1363
|||||||||| |||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1319 AAGGTGGAAGTATTAGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGAGGAAGATTT 1378
Query 1364 TAGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTGGCGATTGTCGGTAGTAGCG 1423
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 1379 TAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGGTAGTAGCG 1438
Query 1424 GAAGCGGAAAATCGACTATTCTTAGAATGATATTCAGGTTCTTTGATGTAGATTCCGGAA 1483
|||||||||||||||| ||||||||||||||||| || |||||||| |||||||||||
Sbjct 1439 GAAGCGGAAAATCGACGATTCTTAGAATGATATTTAGATTCTTTGACACAGATTCCGGAA 1498
Query 1484 ATGTAAAAATTGATGGTCAGGATATAAAGGAAGTGAGACTAGAGAGTCTTAGAAGCTCCA 1543
||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 1499 ATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTTCGAAGCTCCA 1558
Query 1544 TTGGAGTTGTCCCTCAAGATACTGTGCTCTTTAACGACACTATATTTCACAACATTCACT 1603
||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct 1559 TTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAACATTCACT 1618
Query 1604 ATGGAAACCTTTCAGCAACAGAGGAAGAGGTGTAC-AATGCAGCTCGACGAGCAGCGATT 1662
||||||| ||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1619 ATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAA-GCAGCTCGGCGAGCAGCGATT 1677
Query 1663 CACGATACGATCATGAAATTCCCTGATAAATATTCGACCGCGGTGGGAGAAAGAGGGCTG 1722
||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||
Sbjct 1678 CACGATACGATCATGAAATTCCCGGATAAATATAGGACCGCGGTGGGAGAAAGAGGGTTG 1737
Query 1723 ATGCTGAGTGGTGGAGAGAAACAGAGGGTGGCACTTGCTCGTGCATTTCTGAAATCACCA 1782
||||||||||||||||||||||| || |||||||| |||||||| ||||||||||||||
Sbjct 1738 ATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCCTTTCTGAAATCACCT 1797
Query 1783 GCAATCCTATTGTGTGACGAAGCAACAAGTGCACTCGACAGTAAAACCGAGGCAGAGATA 1842
|||||||| ||||||||||||||||| ||||| || ||||||||||| ||||||||||||
Sbjct 1798 GCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAGAGGCAGAGATA 1857
Query 1843 ATGAAAACGCTGAGGTCGCTAGCGAGTAACAGGACTTGCATTTTCATTGCACATAGACTG 1902
||||||||||| || ||| ||||||||||||| |||||| | |||||||||||||| |||
Sbjct 1858 ATGAAAACGCTCAGATCGTTAGCGAGTAACAGAACTTGCGTCTTCATTGCACATAGGCTG 1917
Query 1903 ACCACTGCAATGCAATGTGATGAGATATTAGTAATGGAGAAAGGAAAAGTGGTGGAAAAA 1962
|||||||| |||||||||||||| ||| |||||||||||||||| ||||| |||||||||
Sbjct 1918 ACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAAGGGAAAGTAGTGGAAAAA 1977
Query 1963 GGGACACACGAAGTGTTGTTGGGGAAATCTGGCAGATACGCTAAATTATGGACACAACAA 2022
||||||||| |||||||||||||||||||||| |||||||| || || ||||||||||||
Sbjct 1978 GGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGCCAATTTGTGGACACAACAA 2037
Query 2023 AACAGTAAATTGGAGGTGTGA 2043
|||||||||||||||||||||
Sbjct 2038 AACAGTAAATTGGAGGTGTGA 2058
> Ahg491901 jgi|Araly1|491901|fgenesh2_kg.7__1334__AT4G28620.1
Length=2025
Score = 1664 bits (901), Expect = 0.0
Identities = 1127/1230 (92%), Gaps = 39/1230 (3%)
Strand=Plus/Plus
Query 1 ATGATGAGAGTT-TCTCAACTCCAACTCTGTCGCACTTCTCTTTCGTACCGTCTTCGCTC 59
||||||||| || || || ||||||||||||| ||||||||| || ||||||||||||||
Sbjct 1 ATGATGAGA-TTATCGCAGCTCCAACTCTGTCACACTTCTCTGTCTTACCGTCTTCGCTC 59
Query 60 TGGTTatcatcatcatcatcatcTTCACCACAGTTTCTTCAAGCTCATCAAACGTAACTC 119
||| | | |||||||||||||| |||| |||||||||| || ||||||||||||||||||
Sbjct 60 TGG-T-T-ATCATCATCATCATGTTCATCACAGTTTCTCCAGGCTCATCAAACGTAACTC 116
Query 120 AATTCTTGAATCTCCACCTACT-AATGCATCTCA-TC-AATCTCCATCCCCGATTACTCC 176
||||||||||||| |||||| | ||||||| | | || || |||||| ||||| |||||
Sbjct 117 AATTCTTGAATCTGCACCTA-TCAATGCATATAACTCTAA--TCCATCTCCGATCACTCC 173
Query 177 TATGGTCAACGCACGCGTCATGTTCTTCTCCACTTCAACTTCAGCTCC--A-C---AT-- 228
||||||||||||||||| ||||||||||| ||||||||||||||||| | | ||
Sbjct 174 AATGGTCAACGCACGCGTTATGTTCTTCTCAACTTCAACTTCAGCTCCAAATCAAGATCA 233
Query 229 ------C-C---A---GA-GA--AAATCAACAGGACGTCGTCGGAGAATATCCTTCGGAT 272
| | | || | ||||||||| ||||||||||||||| ||||| || ||
Sbjct 234 GACCACCTCTAAACCTGATAATCAAATCAACACGACGTCGTCGGAGAAGATCCTCCGCAT 293
Query 273 GATTTCAAGCTATCTATGGATGAAAGACAACCCAAAACT-CTGTTTCAGAGTCATCTCTG 331
|||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||
Sbjct 294 GATTTCAAGCTACCTATGGATGAAAGACAACCCAAAACTAC-GTTTCAGAGTCATCACTG 352
Query 332 CTTTTGCGTGTCTCGTGGGAGCTAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAAG 391
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 353 CTTTAGCGTGTCTCGTGGGAGCCAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAAG 412
Query 392 TAGCTATAGATTGGCTCTCTTCATCTTCATTCGTTGATTCAAACCCTTACCTAGTTGCTG 451
||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 413 TAGCTATAGATTGGCTCTCTTCATCTTCATTTGTTGATTCAAATCCTTTTCTAGTTGCTG 472
Query 452 CTTTCGCTACTCCTTCCTCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGTTCTTCTG 511
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 473 CTTTCGCTACTCCTTCCTCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCCG 532
Query 512 CTTTCAACGAGCTTCGTACTAGTGTTTTCTCCAAAGTAGCTCTCCGCACCATACGAACCA 571
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 533 CTTTTAACGAGCTTCGTACTAGTGTTTTCTCCAAAGTAGCTCTCCACACCATACGAACCA 592
Query 572 TCTCTAGAAAAGTTCTCTCGCGTTTACACGATCTCGATCTTCGTTACCATC-TAAATAGA 630
||||||||||||| ||||||||||||||||||||||||||||||||||| | | ||| ||
Sbjct 593 TCTCTAGAAAAGTGCTCTCGCGTTTACACGATCTCGATCTTCGTTACCA-CTTGAATCGA 651
Query 631 GACACAGGTGCTTTGAACAGAATCATTGATCGTGGAAGCCGCGCTATAAACACGATTCTC 690
|| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 652 GAAACAGGAGCTTTGAACAGAATCATTGATCGTGGTAGCCGCGCTATAAACACGATTCTC 711
Query 691 TCAGCTATGGTTTTCAACATTATGCCCACGATCTTGGAGATATCAATGGTCTCATGTATA 750
||||||||||||||||||||| | ||||||||||||||||||||||||||||||| || |
Sbjct 712 TCAGCTATGGTTTTCAACATTGTTCCCACGATCTTGGAGATATCAATGGTCTCATTTACA 771
Query 751 TTAGCATACAAATTTGGAGCTGTTTATGCATTGATTACTTGTCTTTCTGTTGGATCATAT 810
|||||||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||
Sbjct 772 TTAGCATACAAATTCGGAGTTGTCTATGCATTGATTACTTGTCTTTCTGTTGGATCATAT 831
Query 811 ATAGCATTCACGTTGGCTATGACGCAGTGGAGAATCAAGATTAGAAAAGCTATGAATGAA 870
||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 832 ATAGCTTTCACATTGGCTTTGACACAGTGGAGAATCAAGATTAGAAAAGCTATGAATGAA 891
Query 871 GCTGAAAACGATGCTAGCACCAGAGCCATTGACTCTCTCATAAACTACGAGACTGTTAAG 930
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 892 GCCGAAAACGATGCTAGCACAAGAGCCATTGACTCTCTCATAAACTACGAGACTGTTAAG 951
Query 931 TATTTCAACAACGAAGATTACGAAGCTCGAAAGTACGATCAGTTACACGAAAATTACGAA 990
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 952 TATTTCAACAACGAAGATTACGAAGCTCGAAAGTATGATCAGTTACACGAAAATTACGAA 1011
Query 991 GATGCTGCATTGCAAAGTCGGAAAAGCTTTGCCTTATTAAATTTTGGACAGAGTTTTATA 1050
|||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||
Sbjct 1012 GATGCTGCATTGCAAAGTCGGAAAAGTTTTGCCTTGTTAAATTTTGGACAGAGTGTTATA 1071
Query 1051 TTTAGTACAGCTTTGTCAACAGCAATGGTGTTGTGTTCTCAGGGGATTATGAATGGTCAG 1110
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1072 TTTAGCACAGCTTTGTCAACAGCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGTCAG 1131
Query 1111 ATGACAGTTGGTGATTTGGTGATGGTGAATGGTCTCCTCTTTCAACTGTCTCTTCCTCTT 1170
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1132 ATGACAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTT 1191
Query 1171 TACTTTCTCGGGGTTGTTTACAGCGACACC 1200
|| |||||||| |||||||| |||||||||
Sbjct 1192 TATTTTCTCGGTGTTGTTTATAGCGACACC 1221
Score = 1192 bits (645), Expect = 0.0
Identities = 753/806 (93%), Gaps = 4/806 (0%)
Strand=Plus/Plus
Query 1240 CTAGAGGAGAGATCTGATATCGGAGATAAAGATATAGACAGGAAGCTCCCTCCTCTTGTT 1299
|||||||| ||||| |||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1222 CTAGAGGAAAGATCCGATATCGGAGATAAAGATATAGACAGGAAGTTCCCTACTCTTGTT 1281
Query 1300 CTGAAAGGTGGAAGCATTAGTTTTGAGAATGTACATTTTAGTTATCTACCGGAGAGAAAG 1359
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 1282 CTGAAAGGTGGAAGCATTAGTTTTGAGAATGTACACTTTAGTTATCTGCCGGAGAGAAAG 1341
Query 1360 ATTTTAGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTGGCGATTGTCGGTAGT 1419
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 1342 ATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGGTAGT 1401
Query 1420 AGCGGAAGCGGAAAATCGACTATTCTTAGAATGATATTCAGGTTCTTTGATGTAGATTCC 1479
||||| |||||||||||||| |||||||||||||||||||| |||||||| |||||||
Sbjct 1402 AGCGGGAGCGGAAAATCGACGATTCTTAGAATGATATTCAGATTCTTTGACACAGATTCC 1461
Query 1480 GGAAATGTAAAAATTGATGGTCAGGATATAAAGGAAGTGAGACTAG-AGAGTCTTAGAAG 1538
||||||||||| |||||||||||| |||||||||||||||| | | |||||||| ||||
Sbjct 1462 GGAAATGTAAAGATTGATGGTCAGAATATAAAGGAAGTGAG-TTTGAAGAGTCTTCGAAG 1520
Query 1539 CTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTTAACGACACTATATTTCACAACAT 1598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1521 CTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAACGACACTATATTTCACAACAT 1580
Query 1599 TCACTATGGAAACCTTTCAGCAACAGAGGAAGAGGTGTACAATGCAGCTCGACGAGCAGC 1658
||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||
Sbjct 1581 TCACTATGGAAACCTTTCAACAACAGAGGAAGAGGTGTACGATGCAGCTCGGCGAGCAGC 1640
Query 1659 GATTCACGATACGATCATGAAATTCCCTGATAAATATTCGACCGCGGTGGGAGAAAGAGG 1718
||||||||| | ||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 1641 GATTCACGACATGATCATGAAATTCCCGGATAAATATTCAACCGCGGTGGGAGAAAGAGG 1700
Query 1719 GCTGATGCTGAGTGGTGGAGAGAAACAGAGGGTGGCACTTGCTCGTGCATTTCTGAAATC 1778
|||||||||||||||||||||||||||||| || |||||||||||||||||||| |||||
Sbjct 1701 GCTGATGCTGAGTGGTGGAGAGAAACAGAGAGTAGCACTTGCTCGTGCATTTCTAAAATC 1760
Query 1779 ACCAGCAATCCTATTGTGTGACGAAGCAACAAGTGCACTCGACAGTAAAACCGAGGCAGA 1838
||||| || | |||||||||||||| || ||||| |||||||||||||||||||||||
Sbjct 1761 ACCAGTGATTATGTTGTGTGACGAAGCGACTAGTGCGCTCGACAGTAAAACCGAGGCAGA 1820
Query 1839 GATAATGAAAACGCTGAGGTCGCTAGCGAGTAACAGGACTTGCATTTTCATTGCACATAG 1898
|||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1821 GATAATGAAATCGCTGAGGTCGCTAGCGAGTAACAGAAATTGCATTTTCATTGCACATAG 1880
Query 1899 ACTGACCACTGCAATGCAATGTGATGAGAT-ATTAGTAATGGAGAAAGGAAAAGTGGTGG 1957
||||||||||| |||||||||||||||||| || ||||||||||||||| ||||||||||
Sbjct 1881 ACTGACCACTGTAATGCAATGTGATGAGATTAT-AGTAATGGAGAAAGGGAAAGTGGTGG 1939
Query 1958 AAAAAGGGACACACGAAGTGTTGTTGGGGAAATCTGGCAGATACGCTAAATTATGGACAC 2017
||||||||||||| ||||| ||||||| |||||||| |||||||| |||||||||||||
Sbjct 1940 GAAAAGGGACACACCAAGTGCTGTTGGGAAAATCTGGAAGATACGCCAAATTATGGACAC 1999
Query 2018 AACAAAACAGTAAATTGGAGGTGTGA 2043
||||||||||||||||||||||||||
Sbjct 2000 AACAAAACAGTAAATTGGAGGTGTGA 2025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76828024165
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5