BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28630.1
Length=2276
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1 2852 0.0
Ahg495937 jgi|Araly1|495937|fgenesh2_kg.8__1753__AT5G58270.1 1408 0.0
Ahg491901 jgi|Araly1|491901|fgenesh2_kg.7__1334__AT4G28620.1 1125 0.0
> Ahg491900 jgi|Araly1|491900|fgenesh2_kg.7__1333__AT4G28630.1
Length=2107
Score = 2852 bits (1544), Expect = 0.0
Identities = 1945/2131 (91%), Gaps = 57/2131 (3%)
Strand=Plus/Plus
Query 64 ATGATGAGGGGATCTCGGTTTCTCCTCTCTCGCGCTTCTCTGTATCACCGTCTTCGCTCT 123
||||||||||| ||||||||||||||||||||||||||||| | | | ||||||||||||
Sbjct 1 ATGATGAGGGGGTCTCGGTTTCTCCTCTCTCGCGCTTCTCTTTCTTATCGTCTTCGCTCT 60
Query 124 GATCATCACCATCACAGTTTCTCCAGTTTTATCAAACGTAGCTCAATTCAGAGATCACCA 183
||| ||| |||||| | || ||| |||||||||||||||| ||| |||||||||
Sbjct 61 GATTTTCATCATCAC-----C-ACAATTTCATCAAACGTAGCTCAAGTCAAAGATCACCA 114
Query 184 GCTATCAATGCATTCTTCACCGATCCATCTCCATCTCCATCTCCAGTCAACGCACGAGTC 243
||||||||||||||| || |||||||||||||||||||||||| ||||||||||| |||
Sbjct 115 GCTATCAATGCATTCCTCTCCGATCCATCTCCATCTCCATCTCTGGTCAACGCACGCGTC 174
Query 244 TTCTTCTTCTCAACTTCAACTTCAACT-C----CAA-ATCAAGAT----------C-AAA 286
| |||||||| ||||||||||||||| | ||| |||| ||| | |||
Sbjct 175 GTGTTCTTCTCCACTTCAACTTCAACTCCAAATCAAGATCAGGATCAAACCACCACTAAA 234
Query 287 -C-C-------AA--AACA-G-CATCATCT-AAGAAGATCCTCCGCACGATTTCAAGCTA 332
| | || |||| | | || ||| || ||||||||||||||||||||||||||
Sbjct 235 TCTCATAAAAAAATCAACACGACGTCGTCTCAA-AAGATCCTCCGCACGATTTCAAGCTA 293
Query 333 TCTATGGATGAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCT 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TCTATGGATGAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCT 353
Query 393 CA-TAGGAGCTAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAATTATCTATCGATT 451
| |||||||||||||||||||||||||| ||||||||||||||||| || |||||||||
Sbjct 354 -ATTAGGAGCTAAGTTCTTGAATGTTCAATTTCCTTTCCTCTTCAAAGTAGCTATCGATT 412
Query 452 TACTCTCTTCATATTCATCTTCAACAATCACTGATTCAAATCCTTATCTACTTGCTGCTT 511
|||||||||||| |||| ||||||||| |||||||||||| |||||| ||||||||||
Sbjct 413 TACTCTCTTCATCTTCA---TCAACAATCGCTGATTCAAATCTTTATCTTCTTGCTGCTT 469
Query 512 TCGCTACTCCTTCTTCCGTTCTCATTGGCTATGGCATTGCTCGATCTGGATCTTCAGCTT 571
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 470 TCGCTACTCCTTCTTCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCTGCTT 529
Query 572 TTAACGAGCTTCGTACTGCTGTTTTCTCCAAAGTATCTCTCCGCACAATACGATCTGTTT 631
||||||||||||||| |||||||||||| |||||| ||||||||||||||||||| ||||
Sbjct 530 TTAACGAGCTTCGTAGTGCTGTTTTCTCTAAAGTAGCTCTCCGCACAATACGATCCGTTT 589
Query 632 CTCGTAAAGTGCTCTCGCATTTACATGATCTTGATCTTCGTTACCATTTGAATCGAGAAA 691
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 590 CTCGTAAAGTGCTCTCGCATTTACACGATCTTGATCTTCGTTACCATTTGAATCGAGAAA 649
Query 692 CAGGAGCTTTGAATAGAATCATTGACCGTGGAAGTCGCGCGATTAACACGATCCTCTCTG 751
||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||| |
Sbjct 650 CAGGAGCTTTGAATAGAATCATTGATCGTGGAAGCCGCGCTATTAACACGATCCTCTCAG 709
Query 752 CTATGGTTTTCAATGTTGTTCCAACGATCTTGGAGATATCAATGGTCACAGGTATATTAG 811
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 710 CTATGGTTTTCAATGTTGTTCCAACGATCTTGGAGATATCTATGGTCACAGGTATATTAG 769
Query 812 CATACAATTTTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATAG 871
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 770 CATACAATTTTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATTG 829
Query 872 CTTTCACATTGGTTGTGACACAGTATAGAACTAAGTTTAGAAAAGCTATGAACCAAGCTG 931
|||||||||||||||||||||| | ||||||||||||||| ||||||||| ||||||
Sbjct 830 CTTTCACATTGGTTGTGACACAATGGAGAACTAAGTTTAGATTAGCTATGAATAAAGCTG 889
Query 932 ATAATGATGCAAGCACAAGAGCTATTGATTCTCTTGTAAACTACGAGACTGTTAAGTATT 991
|||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 890 ATAATGATGCTAGCACAAGAGCTATTGATTCTCTTATAAACTACGAGACTGTTAAGTATT 949
Query 992 TTAACAACGAAGATTACGAAGCGAGAAAGTACGATGATTTACTCGGAAGATATGAAGATG 1051
| || |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 950 TCAATAACGAAGATTACGAAGGGAGAAAGTACGATGATTTACTCGAAAGATATGAAGATG 1009
Query 1052 CTGCATTGCAAACTCAGAAGAGTCTTGCGTTTTTAGATTTTGGACAGAGTTTTATATTTA 1111
||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 1010 CTGCATTGCGAACTCAGAAAAGTCTTGCCTTTTTAGATTTTGGACAGAGTTTTATATTTA 1069
Query 1112 GTACAGCTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGA 1171
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1070 GTACAGCTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGA 1129
Query 1172 CAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACT 1231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1130 CAGTTGGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACT 1189
Query 1232 TTCTCGGTGGTGTTTACCGTGAAACCGTTCAGGGTCTTGTTGATATGAAATCATTGTTCC 1291
|||| |||||||||||||| |||||||||||| | ||| | |||||||||||| ||||||
Sbjct 1190 TTCTTGGTGGTGTTTACCGCGAAACCGTTCAGAGCCTTATGGATATGAAATCAATGTTCC 1249
Query 1292 AGTTGCTAGAGGAGAGATCCGATATTGGAGATAAAGATACAGAGACAAAGCTACCTCCTC 1351
||||||||||||||||||||||||| ||||||||||||||| | |||||||| |||| ||
Sbjct 1250 AGTTGCTAGAGGAGAGATCCGATATCGGAGATAAAGATACAAATACAAAGCTTCCTCTTC 1309
Query 1352 TTGTTCTGAGAGGTGGAAGCATCAGTTTTGAGAATGTACATTTTAGTTATCTGCCAGAGA 1411
||||||||| ||||||||| || ||||||||||||||||| ||||||||||| || ||||
Sbjct 1310 TTGTTCTGAAAGGTGGAAGTATTAGTTTTGAGAATGTACACTTTAGTTATCTACCGGAGA 1369
Query 1412 GAAAGATTTTGGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTAGCGATTGTTG 1471
| |||||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 1370 GGAAGATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTG 1429
Query 1472 GTAGTAGCGGAAGCGGCAAATCGACGATTCTTAGAATGAT-TTTCAGGTTCTTTGACACA 1530
|||||||||||||||| ||||||||||||||||||||||| ||| || ||||||||||||
Sbjct 1430 GTAGTAGCGGAAGCGGAAAATCGACGATTCTTAGAATGATATTT-AGATTCTTTGACACA 1488
Query 1531 GATTCTGGTAATGTTAGGATTGATGGTCAAGATATAAAGGAAGTGACACTAGAGAGTCTT 1590
||||| || ||||| | |||||||||||| |||||||||||||||| | |||||||||||
Sbjct 1489 GATTCCGGAAATGTAAAGATTGATGGTCAGGATATAAAGGAAGTGAGATTAGAGAGTCTT 1548
Query 1591 CGAAGCTGCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCAC 1650
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1549 CGAAGCTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCAC 1608
Query 1651 AACATTCACTATGGAAACCTTTCAGCAACAGAAGAAGAGGTGTACGATGCAGCTAGGCGA 1710
||||||||||||||||| |||||||||||||| |||||||||||||| |||||| |||||
Sbjct 1609 AACATTCACTATGGAAATCTTTCAGCAACAGAGGAAGAGGTGTACGAAGCAGCTCGGCGA 1668
Query 1711 GCAGTGATTCACGATACGATCATGAAATTTCCGGATAAATATTCGACCGCGGTGGGAGAA 1770
|||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 1669 GCAGCGATTCACGATACGATCATGAAATTCCCGGATAAATATAGGACCGCGGTGGGAGAA 1728
Query 1771 AGAGGGCTGATGCTGAGTGGTGGAGAAAAACAAAGAGTGGCACTTGCTCGTGCCTTTCTG 1830
|||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 1729 AGAGGGTTGATGCTGAGTGGTGGAGAGAAACAAAGAGTGGCACTGGCTCGTGCCTTTCTG 1788
Query 1831 AAATCACCAGCGATTCTCTTGTGTGACGAAGCAACGAATGCGCTTGATAGTAAAACCGAG 1890
|||||||| || || || ||||||||||||||||||| ||||||||| |||||||| |||
Sbjct 1789 AAATCACCTGCAATCCTGTTGTGTGACGAAGCAACGAGTGCGCTTGACAGTAAAACAGAG 1848
Query 1891 GCAGAGATAATGAAAACGTTCAGGTCGCTAGCGAGTAACAGAACATGCATTTTCATTGCA 1950
|||||||||||||||||| |||| ||| |||||||||||||||| ||| | |||||||||
Sbjct 1849 GCAGAGATAATGAAAACGCTCAGATCGTTAGCGAGTAACAGAACTTGCGTCTTCATTGCA 1908
Query 1951 CATAGGCTGACCACTGCGATGCAATGTGATGAGATAATAGTAATGGAGAAAGGGAAAGTG 2010
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1909 CATAGGCTGACCACTGCGATGCAATGTGATGAAATAATAGTAATGGAGAAAGGGAAAGTA 1968
Query 2011 GTGGAAAAAGGGACACACCAAGTGTTGTTGGAGAAATCTGGCAGATACGCTAAATTATGG 2070
||||||||||||||||||||||||||||||| ||||||||| |||||||| || || |||
Sbjct 1969 GTGGAAAAAGGGACACACCAAGTGTTGTTGGGGAAATCTGGGAGATACGCCAATTTGTGG 2028
Query 2071 ACACAACAAAACAGTACACTGGAGGTGTGAATCTCAAGAGCTAGACAGCTAGTGTTTGGG 2130
|||||||||||||||| | |||||||||||| |||||| | | | | || | |||
Sbjct 2029 ACACAACAAAACAGTAAATTGGAGGTGTGAA----AAGAGC-A-A--G-T-GT-TG-GGG 2076
Query 2131 TTCTGTTTTCGCCTCACTAATTCtttttttt 2161
|||||||||||||| | ||||||||||||||
Sbjct 2077 TTCTGTTTTCGCCTAATTAATTCTTTTTTTT 2107
> Ahg495937 jgi|Araly1|495937|fgenesh2_kg.8__1753__AT5G58270.1
Length=2340
Score = 1408 bits (762), Expect = 0.0
Identities = 1478/1818 (81%), Gaps = 72/1818 (4%)
Strand=Plus/Plus
Query 306 GAAGATCCTCCGCACGATTTCAAGCTATCTATGGATGAAAGACAACCCAGAACTCCGATT 365
|||||| ||||||||| || | ||||| | ||||||| |||||| |||||| |||| ||
Sbjct 386 GAAGATTCTCCGCACGCTTGCTGGCTATTTGTGGATGAGAGACAATCCAGAATTCCGTTT 445
Query 366 CAGAGTCATCGCTGCTTTAGCG-TGTCTCA-TAGGAGCTAA-GTTCTTGAATGTTCAAGT 422
|| |||||||||||||| | | | ||| | | || ||||| ||| |||||||| |||||
Sbjct 446 GAGGGTCATCGCTGCTTT-GGGTTTTCT-AGTGGGTGCTAAGGTT-TTGAATGTCCAAGT 502
Query 423 TCCTTTCCTCTTCAAATTATCTATCGATTTACTCT-CTTCA--TA----TTC---A---T 469
|||||||||||||||||| || | |||| || | ||||| | | | | |
Sbjct 503 CCCTTTCCTCTTCAAATTAGCTGTTGATTGGCT-TGCTTCAGCCACCGGTACAGGAGCCT 561
Query 470 CT-T--CAACAATCACTGATTCAAATCCTTA-TCTACTTGCTGCTTTCGCTACTCCTTCT 525
|| | | || || ||| | |||| || || ||| ||| ||| ||| ||||||||| ||
Sbjct 562 CTCTGACCACCTTCGCTGCTACAAA-CCCTACTCTTCTTACTGTTTTTGCTACTCCTGCT 620
Query 526 TCCGTTCTCATTGGCTATGGCATTGCTC-GATCTGGATCTTCAGCTTTTAACGAGCTTCG 584
| || |||||||| ||||||||||||| || | |||||||| |||||||| || |||||
Sbjct 621 GCTGTCCTCATTGGATATGGCATTGCTCGGA-CGGGATCTTCTGCTTTTAATGAACTTCG 679
Query 585 TACTGCTGTTTTCTCCAAAGTATCTCTCCGCACAATACGATCTGTTTCTCGTAAA-GTGC 643
||||||||| ||||| || || ||||||| |||||||||||||||||| | ||| |||
Sbjct 680 TACTGCTGTGTTCTCTAAGGTGGCTCTCCGAACAATACGATCTGTTTCTAG-AAAGGTGT 738
Query 644 TCTCGCATTTACATGATCTTGATCTTCGTTACCATTTGAA-TCGAGAAACAGGAGCTTTG 702
|||| ||||||||||||||||| ||||||||||| | || |||||||||||| || |||
Sbjct 739 TCTCACATTTACATGATCTTGACCTTCGTTACCACCT-AAGTCGAGAAACAGGTGCCTTG 797
Query 703 AATAGAATCATTGACCGTGGAAGTCGCGCGATTAACACGATCCTCTCTGCTATGGTTTTC 762
|| ||||| ||||| ||||| || || ||||| || |||||||| ||||||||||||
Sbjct 798 AACAGAATTATTGATCGTGGTAGCCGTGCGATAAATTTTATCCTCTCAGCTATGGTTTTC 857
Query 763 AATGTTGTTCCAACGATCTTGGAGATATCAATGGTCA-CAGGTATATTAGCATACAATTT 821
||||||||||| || || ||||||||||| ||||| | |||||||| |||||||||| ||
Sbjct 858 AATGTTGTTCCTACCATATTGGAGATATCTATGGT-ATCAGGTATACTAGCATACAAGTT 916
Query 822 TGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATAGCTTTCACATT 881
||| ||| |||||| | ||| ||||| || || ||||||||||| || | |||||||||
Sbjct 917 CGGAGCTGCTTTTGCCTGGATTACTTCCCTCTCTGTTGGATCATATATCGTTTTCACATT 976
Query 882 GGTTGTGACACAGTATAGAACTAAGTTTAGAAAAGCTATGAACCAAGCTGATAATGATGC 941
| ||||||||||| |||| ||||||||||| ||||||||| ||||||||||||||||
Sbjct 977 AGCTGTGACACAGTGGCGAACCAAGTTTAGAAAGGCTATGAACAAAGCTGATAATGATGC 1036
Query 942 AAGCACAAGAGCTATTGATTCTCTTG-TAAACTACGAGACTGTTAAGTATTTTAACAACG 1000
|||||||| || |||||||||| || |||| || |||||||| || ||||||||||| |
Sbjct 1037 TAGCACAAGGGCCATTGATTCTC-TGATAAATTATGAGACTGTCAAATATTTTAACAATG 1095
Query 1001 AAGATTACGAAGC-GAGAAAGTACGATGATTTACTCG-GAAGATATGAAGATGCTGCATT 1058
||| ||| ||||| || |||||| || | || || | || ||||||||||||||| |
Sbjct 1096 AAGGTTATGAAGCTGA-AAAGTATGACCAGTTCCT-GAAAAAATATGAAGATGCTGCCCT 1153
Query 1059 GCAAACTCAGAAG-AGTCTTGCGTTTTTAGATTTTGGACAGAGTTTTATATTTAGTACAG 1117
||||||||| ||| |||||||| |||||| | |||||||| ||| | |||||||||||||
Sbjct 1154 GCAAACTCA-AAGAAGTCTTGCTTTTTTAAACTTTGGACAAAGTATCATATTTAGTACAG 1212
Query 1118 CTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGG-ATTATGAATGGAGAGATGACAGTT 1176
|| |||||||| ||||||||||||| |||| |||| || |||||||| ||||||||||
Sbjct 1213 CTCTGTCAACAGCAATGGTGTTGTGCTCTC-AGGGCATCATGAATGGCCAGATGACAGTC 1271
Query 1177 GGTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTC 1236
||||| ||||| ||||||||||| ||||||||||| |||||||||||||| ||||| |
Sbjct 1272 GGTGACTTGGTTATGGTGAATGGACTTCTCTTTCAGTTGTCTCTTCCTCTAAACTTTTTG 1331
Query 1237 GGTGGTGTTTACCGTGAAACCGTTCAGGGTCTTGTTGATATGAAATCATTGTTCCAGTTG 1296
||| ||||||||||||||||| ||||| | ||||| || ||||||||| |||||||||||
Sbjct 1332 GGTAGTGTTTACCGTGAAACCATTCAGAGCCTTGTGGACATGAAATCAATGTTCCAGTTG 1391
Query 1297 CTAGAGGAGAGATCCGATATTGGAGATAAAGATACAGA-GACAAAGCTACCTCCTCTTGT 1355
|||||||||| ||| || | | | || ||||||| ||| || | ||||||||
Sbjct 1392 CTAGAGGAGAAATCTGACA-T---CA-CAA-ATACAGATGAC---GC-AAAGCCTCTTGT 1441
Query 1356 TCTGAGAGGTGGAAGCA-TCAGTTTTGAGAATGTACATTTTAGTTATCTGCCAGAGAGAA 1414
|||| ||||||||||| | || ||||| |||||||| || ||||| || ||||||||||
Sbjct 1442 ACTGAAAGGTGGAAGCATTGAG-TTTGAAAATGTACACTTCAGTTACCTTCCAGAGAGAA 1500
Query 1415 AGATTTTGGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTAGCGATTGTTGGTA 1474
| || || ||||| ||||| |||| ||||||||||| |||||||| || || |||||||
Sbjct 1501 AAATATTAGATGGAATTTCCTTTGTCGTACCGGCAGGAAAAAGTGTGGCAATCGTTGGTA 1560
Query 1475 GTAGCGGAAGCGGCAAATCGACGATTCTTAGAATGATTTTCAGGTTCTTTGACACAGATT 1534
|||||| |||||||| || || |||||||||||| | ||||| ||||| ||||||||||
Sbjct 1561 CTAGCGGGAGCGGCAAGTCAACAATTCTTAGAATGCTATTCAGATTCTTCGACACAGATT 1620
Query 1535 CTGGTAATGTTAGGATTGATGGTCAAGATATAAAGGAAGTGACACTAGAGAGTCTTCGAA 1594
| || ||||| |||||||| || ||||||||||||||||||| |||||| || || ||||
Sbjct 1621 CCGGAAATGTAAGGATTGACGGGCAAGATATAAAGGAAGTGAGACTAGATAGCCTCCGAA 1680
Query 1595 GCTGCATTGGAGTTGT-CCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAAC 1653
||| ||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1681 GCTCCATAGGAGTTGTGCCC-CAAGATACTGTGCTCTTCAATGACACAATATTTCACAAC 1739
Query 1654 ATTCACTATGGAAACCTTTCAGCAACAGAAGAAGAGGTGTACGATGCAGCTAGGCGAGCA 1713
|| || |||||| || ||||| ||| |||||||||||||||| || ||| |||| ||
Sbjct 1740 ATACATTATGGACGTCTCTCAGCTACAAAAGAAGAGGTGTACGAGGCTGCTCGGCGTGCT 1799
Query 1714 GTGATTCACGATACGATCATGAAATTTCCG-GATAAATATTCGACCG--CGGTGGGAGAA 1770
| ||||| || ||||||| | ||||||| ||||||||||| || | || |||| |||
Sbjct 1800 GCAATTCATGAAACGATCA-GTAATTTCCCTGATAAATATTCCAC-GATCGTTGGG-GAA 1856
Query 1771 AGAGGGC-TGATGCTGAGTGGTGGAGAAAAACAAAGAGTGGCACTTGCTCGTGCCTTTCT 1829
|| |||| | | | | ||||||||||| ||||||||||||||||||||||| || ||| |
Sbjct 1857 AG-GGGCCTCAAGTTAAGTGGTGGAGAGAAACAAAGAGTGGCACTTGCTCGGGCTTTTTT 1915
Query 1830 GAAATCACCAGCGATTCTCTTGTGTGACGAAGCAACGAATGCGCTTGATAGTAAAACCGA 1889
|||||| || |||||||| |||||||| || ||||| | |||||| || || | ||| ||
Sbjct 1916 GAAATCCCCTGCGATTCTGTTGTGTGATGAGGCAACCAGTGCGCTAGACAGCACAACAGA 1975
Query 1890 GGCAGAGATAATGAAAACGTTCA-GGTCGCTAGCGAGTAACAGAACATGCAT-TTTCATT 1947
|||||||||| |||| | ||| || | || || |||||||| |||| ||| ||| |||
Sbjct 1976 GGCAGAGATACTGAACGCACTCAAGG-CACTGGCTAGTAACAGGACATCCATCTTT-ATT 2033
Query 1948 GCACATAGGCTGACCACTGCGATGCAATGTGATGAGATAATAGTAATGGAGAAA-GGGAA 2006
|| || |||||||||||||||||||||||||| ||||| | ||| |||| ||| |||||
Sbjct 2034 GCCCACAGGCTGACCACTGCGATGCAATGTGACGAGATCGTTGTACTGGA-AAACGGGAA 2092
Query 2007 AGTGGTGGAAAAAGGGACACACCAAGTGTTGTTGGAGAAATCTGGCAGATACGCTAAATT 2066
||||||||| |||| | ||| | | | | |||| |||||| || ||||| || | |
Sbjct 2093 GGTGGTGGAACAAGGCCCCCACGACGAGCTATTGGGGAAATCAGGGAGATATGCGCAGCT 2152
Query 2067 ATGGACACAACAAAACAG 2084
||||||||||||||||||
Sbjct 2153 ATGGACACAACAAAACAG 2170
> Ahg491901 jgi|Araly1|491901|fgenesh2_kg.7__1334__AT4G28620.1
Length=2025
Score = 1125 bits (609), Expect = 0.0
Identities = 979/1150 (85%), Gaps = 55/1150 (5%)
Strand=Plus/Plus
Query 133 CATCACAGTTTCTCCAGTTTTATCAAACGTAGCTCAATTC-AGAGATCACCAGCTATCAA 191
||||||||||||||||| | |||||||||| |||||||| || ||| || |||||||
Sbjct 82 CATCACAGTTTCTCCAGGCTCATCAAACGTAACTCAATTCTTGA-ATCTGCACCTATCAA 140
Query 192 TGCATTCTTCAC-C-GATCCATCTCCATCTCCATCTCC-A--GTCAACGCACGAGTCT-T 245
|||| | | || | |||||||||| | || |||| | ||||||||||| || | |
Sbjct 141 TGCA-T-ATAACTCTAATCCATCTCC-GAT-CA-CTCCAATGGTCAACGCACGCGT-TAT 194
Query 246 CTTCTTCTCAACTTCAACTTCAACTCCAAATCAAGATCA-A--A-C-C---A----A-AA 292
||||||||||||||||||||| |||||||||||||||| | | | | | | ||
Sbjct 195 GTTCTTCTCAACTTCAACTTCAGCTCCAAATCAAGATCAGACCACCTCTAAACCTGATAA 254
Query 293 -C--AGC-A-TC-A--TC-T--AAGAAGATCCTCCGCACGATTTCAAGCTATCTATGGAT 341
| | | | | | || | ||||||||||||||| |||||||||||| ||||||||
Sbjct 255 TCAAATCAACACGACGTCGTCGGAGAAGATCCTCCGCATGATTTCAAGCTACCTATGGAT 314
Query 342 GAAAGACAACCCAGAACTCCGATTCAGAGTCATCGCTGCTTTAGCGTGTCTCATAGGAGC 401
||||||||||||| |||| || |||||||||||| ||||||||||||||||| | |||||
Sbjct 315 GAAAGACAACCCAAAACTACGTTTCAGAGTCATCACTGCTTTAGCGTGTCTCGTGGGAGC 374
Query 402 TAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAATTATCTATCGATTTACTCTCTTC 461
|||||||||||||||||||||||||||||||||||| || |||| |||| ||||||||
Sbjct 375 CAAGTTCTTGAATGTTCAAGTTCCTTTCCTCTTCAAAGTAGCTATAGATTGGCTCTCTTC 434
Query 462 ATATTCATCTTCAACAATCACTGATTCAAATCCTTATCTACTTGCTGCTTTCGCTACTCC 521
|| ||||| || | |||||||||||||| |||| |||||||||||||||||||
Sbjct 435 ATCTTCAT-TT-----GT---TGATTCAAATCCTTTTCTAGTTGCTGCTTTCGCTACTCC 485
Query 522 TTCTTCCGTTCTCATTGGCTATGGCATTGCTCGATCTGGATCTTCAGCTTTTAACGAGCT 581
||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 486 TTCCTCTGTTCTCATTGGTTATGGCATTGCTCGATCTGGATCTTCCGCTTTTAACGAGCT 545
Query 582 TCGTACT-GCTGTTTTCTCCAAAGTATCTCTCCGCACAATACGATCTGTTTCTCGTAAAG 640
||||||| | |||||||||||||||| |||||| ||| |||||| | | ||| | ||||
Sbjct 546 TCGTACTAG-TGTTTTCTCCAAAGTAGCTCTCCACACCATACGAACCATCTCTAGAAAAG 604
Query 641 TGCTCTCGCATTTACATGATCTTGATCTTCGTTACCATTTGAATCGAGAAACAGGAGCTT 700
||||||||| |||||| ||||| |||||||||||||| ||||||||||||||||||||||
Sbjct 605 TGCTCTCGCGTTTACACGATCTCGATCTTCGTTACCACTTGAATCGAGAAACAGGAGCTT 664
Query 701 TGAATAGAATCATTGACCGTGGAAGTCGCGCGATTAACACGATCCTCTCTGCTATGGTTT 760
|||| ||||||||||| ||||| || ||||| || |||||||| ||||| ||||||||||
Sbjct 665 TGAACAGAATCATTGATCGTGGTAGCCGCGCTATAAACACGATTCTCTCAGCTATGGTTT 724
Query 761 TCAATGTTGTTCCAACGATCTTGGAGATATCAATGGTCACAGGTATATTAGCATACAATT 820
|||| ||||||| |||||||||||||||||||||||| || || |||||||||||| |
Sbjct 725 TCAACATTGTTCCCACGATCTTGGAGATATCAATGGTCTCATTTACATTAGCATACAAAT 784
Query 821 TTGGACCTGTTTTTGCTTTGATCACTTCTCTTTCCGTTGGATCATACATAGCTTTCACAT 880
| ||| ||| | ||| ||||| |||| |||||| ||||||||||| |||||||||||||
Sbjct 785 TCGGAGTTGTCTATGCATTGATTACTTGTCTTTCTGTTGGATCATATATAGCTTTCACAT 844
Query 881 TGG-TTGTGACACAGTATAGAACT-AAGTTTAGAAAAGCTATGAACCAAGCTGATAATGA 938
||| || ||||||||| |||| | ||| |||||||||||||||| |||| || || ||
Sbjct 845 TGGCTT-TGACACAGTGGAGAA-TCAAGATTAGAAAAGCTATGAATGAAGCCGAAAACGA 902
Query 939 TGCAAGCACAAGAGCTATTGATTCTCTTGTAAACTACGAGACTGTTAAGTATTTTAACAA 998
||| ||||||||||| ||||| ||||| ||||||||||||||||||||||||| |||||
Sbjct 903 TGCTAGCACAAGAGCCATTGACTCTCTCATAAACTACGAGACTGTTAAGTATTTCAACAA 962
Query 999 CGAAGATTACGAAGCGAGAAAGTACGATGATTTACTCGGAAGA-TATGAAGATGCTGCAT 1057
||||||||||||||| ||||||| ||| | |||| | ||| | || |||||||||||||
Sbjct 963 CGAAGATTACGAAGCTCGAAAGTATGATCAGTTACAC-GAAAATTACGAAGATGCTGCAT 1021
Query 1058 TGCAAACTCAGAAGAGTCTTGCGTTTTTAGATTTTGGACAGAGTTTTATATTTAGTACAG 1117
|||||| || ||| ||| |||| || ||| |||||||||||||| |||||||||| ||||
Sbjct 1022 TGCAAAGTCGGAAAAGTTTTGCCTTGTTAAATTTTGGACAGAGTGTTATATTTAGCACAG 1081
Query 1118 CTTTGTCAACATCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGAGAGATGACAGTTG 1177
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1082 CTTTGTCAACAGCAATGGTGTTGTGTTCTCAAGGGATTATGAATGGTCAGATGACAGTTG 1141
Query 1178 GTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTACTTTCTCG 1237
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1142 GTGATTTGGTGATGGTGAATGGTCTTCTCTTTCAATTGTCTCTTCCTCTTTATTTTCTCG 1201
Query 1238 GTGGTGTTTA 1247
||| ||||||
Sbjct 1202 GTGTTGTTTA 1211
Score = 1086 bits (588), Expect = 0.0
Identities = 736/808 (91%), Gaps = 8/808 (1%)
Strand=Plus/Plus
Query 1297 CTAGAGGAGAGATCCGATATTGGAGATAAAGATACAGAGACAAAGCTACCTCCTCTTGTT 1356
|||||||| ||||||||||| ||||||||||||| ||| | ||| | ||| ||||||||
Sbjct 1222 CTAGAGGAAAGATCCGATATCGGAGATAAAGATATAGACAGGAAGTTCCCTACTCTTGTT 1281
Query 1357 CTGAGAGGTGGAAGCATCAGTTTTGAGAATGTACATTTTAGTTATCTGCCAGAGAGAAAG 1416
|||| |||||||||||| ||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1282 CTGAAAGGTGGAAGCATTAGTTTTGAGAATGTACACTTTAGTTATCTGCCGGAGAGAAAG 1341
Query 1417 ATTTTGGATGGGATTTCATTTGAGGTACCGGCAGGGAAAAGTGTAGCGATTGTTGGTAGT 1476
||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||
Sbjct 1342 ATTTTAGATGGGATTTCATTTGAGGTACCGGCGGGGAAAAGTGTGGCGATTGTTGGTAGT 1401
Query 1477 AGCGGAAGCGGCAAATCGACGATTCTTAGAATGATTTTCAGGTTCTTTGACACAGATTCT 1536
||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 1402 AGCGGGAGCGGAAAATCGACGATTCTTAGAATGATATTCAGATTCTTTGACACAGATTCC 1461
Query 1537 GGTAATGTTAGGATTGATGGTCAAG-ATATAAAGGAAGTGACACTAG-AGAGTCTTCGAA 1594
|| ||||| | ||||||||||| || ||||||||||||||| | | ||||||||||||
Sbjct 1462 GGAAATGTAAAGATTGATGGTC-AGAATATAAAGGAAGTGA-GTTTGAAGAGTCTTCGAA 1519
Query 1595 GCTGCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAATGACACAATATTTCACAACA 1654
||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1520 GCTCCATTGGAGTTGTCCCTCAAGATACTGTGCTCTTCAACGACACTATATTTCACAACA 1579
Query 1655 TTCACTATGGAAACCTTTCAGCAACAGAAGAAGAGGTGTACGATGCAGCTAGGCGAGCAG 1714
|||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||
Sbjct 1580 TTCACTATGGAAACCTTTCAACAACAGAGGAAGAGGTGTACGATGCAGCTCGGCGAGCAG 1639
Query 1715 TGATTCACGATACGATCATGAAATTTCCGGATAAATATTCGACCGCGGTGGGAGAAAGAG 1774
||||||||| | |||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 1640 CGATTCACGACATGATCATGAAATTCCCGGATAAATATTCAACCGCGGTGGGAGAAAGAG 1699
Query 1775 GGCTGATGCTGAGTGGTGGAGAAAAACAAAGAGTGGCACTTGCTCGTGCCTTTCTGAAAT 1834
|||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||| ||||
Sbjct 1700 GGCTGATGCTGAGTGGTGGAGAGAAACAGAGAGTAGCACTTGCTCGTGCATTTCTAAAAT 1759
Query 1835 CACCAGCGATTCTCTTGTGTGACGAAGCAACGAATGCGCTTGATAGTAAAACCGAGGCAG 1894
|||||| |||| | |||||||||||||| || | |||||| || ||||||||||||||||
Sbjct 1760 CACCAGTGATTATGTTGTGTGACGAAGCGACTAGTGCGCTCGACAGTAAAACCGAGGCAG 1819
Query 1895 AGATAATGAAAACGTTCAGGTCGCTAGCGAGTAACAGAACAT-GCATTTTCATTGCACAT 1953
||||||||||| || | |||||||||||||||||||||| || |||||||||||||||||
Sbjct 1820 AGATAATGAAATCGCTGAGGTCGCTAGCGAGTAACAGAA-ATTGCATTTTCATTGCACAT 1878
Query 1954 AGGCTGACCACTGCGATGCAATGTGATGAGATAATAGTAATGGAGAAAGGGAAAGTGGTG 2013
|| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1879 AGACTGACCACTGTAATGCAATGTGATGAGATTATAGTAATGGAGAAAGGGAAAGTGGTG 1938
Query 2014 GAAAAAGGGACACACCAAGTGTTGTTGGAGAAA-TCTGGCAGATACGCTAAATTATGGAC 2072
| ||||||||||||||||||| |||||| |||| ||||| |||||||| |||||||||||
Sbjct 1939 GGAAAAGGGACACACCAAGTGCTGTTGG-GAAAATCTGGAAGATACGCCAAATTATGGAC 1997
Query 2073 ACAACAAAACAGTACACTGGAGGTGTGA 2100
|||||||||||||| | |||||||||||
Sbjct 1998 ACAACAAAACAGTAAATTGGAGGTGTGA 2025
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85703051250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5