BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28650.1
Length=3474
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328832 jgi|Araly1|328832|fgenesh1_pm.C_scaffold_7001059 4686 0.0
> Ahg328832 jgi|Araly1|328832|fgenesh1_pm.C_scaffold_7001059
Length=3048
Score = 4686 bits (2537), Expect = 0.0
Identities = 2883/3053 (94%), Gaps = 12/3053 (0%)
Strand=Plus/Plus
Query 257 TGAAGATGAAGATGAAGATAATAGTTCTCTTCCTTTACTACTGTTACATTGGTTCTACTT 316
||||| ||||||||||||| || ||||||||||| |||||||||||||||||||||||||
Sbjct 2 TGAAGTTGAAGATGAAGATTATGGTTCTCTTCCTCTACTACTGTTACATTGGTTCTACTT 61
Query 317 CCTCTGTTTTAGCTTCCATCGACAATGTCAACGAGCTCTCTGTTTTGCTGTCGGTGAAAT 376
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||
Sbjct 62 CCTCTGTTTTAGCTTCCATCGACAATGTCAACGAGCTCTCTATTTTGCTCTCGGTAAAAT 121
Query 377 CAACTCTTGTGGATCCTCTCAACTTTCTCAAAGACTGGAAGCTTTCAGACACCAGCGATC 436
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 122 CAACTCTTGTGGATCCTCTCAACTTTCTCAAAGACTGGAAGCTTTCAGAAACTGGCGATC 181
Query 437 ACTGTAATTGGACCGGTGTTCGGTGCAACTCAAATGGCAATGTTGAGAAGCTCGACCTGG 496
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 182 ACTGTAACTGGACCGGTGTTCGGTGCAACTCCCATGGCTTTGTTGAGAAGCTCGACCTGT 241
Query 497 CGGGGATGAATCTCACAGGCAAAATCTCAGATTCGATCAGCCAGCTGAGTAGCCTTGTCT 556
|||||||||||||||| || |||||||||||||||||||| ||||||| |||||||| |
Sbjct 242 CGGGGATGAATCTCACGGGTAAAATCTCAGATTCGATCAGGCAGCTGACAAGCCTTGTTT 301
Query 557 CGTTTAACATATCATGCAACGGATTCGAGTCGCTGCTCCCGAAATCAATCCCTCCGTTGA 616
| |||||||| |||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct 302 CATTTAACATCTCATGCAACGGATTCGAGTCGCTGCTACCGAAATCGATCCCTCCGTTGA 361
Query 617 AATCTATTGACATCAGCCAGAATTCATTCTCAGGGAGTCTTTTTCTATTTAGCAATGAAT 676
| ||||| |||||||||||||||||||||||||||||||||||||||||| | || ||||
Sbjct 362 ACTCTATAGACATCAGCCAGAATTCATTCTCAGGGAGTCTTTTTCTATTTGGTAACGAAT 421
Query 677 CACTTGGGCTTGTTCACCTCAATGCTTCAGGGAACAATCTC-TCCGGAAATCTCACGGAG 735
||||||| || |||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 422 CACTTGGACTCGTTCACCTCAATGCTTCAGGGAACAATCTCAT-TGGAAATCTCACCGAG 480
Query 736 GATCTCGGGAACTTAGTCTCTTTAGAAGTTCTTGATCTCCGAGGGAATTTCTTTCAAGGG 795
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 GATCTCGGGAACTTAGTCTCTTTAGAAGTTCTTGATCTCCGAGGGAATTTCTTTCAAGGG 540
Query 796 TCACTTCCAAGTTCATTCAAGAATCTACAGAAGCTGAGATTTCTCGGATTATCCGGAAAC 855
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TCACTTCCAAGTTCATTCAAGAATCTACAGAAGCTGAGATTTCTCGGATTATCCGGAAAC 600
Query 856 AATCTCACCGGCGAGTTACCAAGCGTTCTCGGCCAGCTCCCTTCACTTGAAACCGCCATT 915
|||||||| || |||||||||||| |||||||| |||||| |||||||||||||||||||
Sbjct 601 AATCTCACTGGTGAGTTACCAAGCCTTCTCGGCGAGCTCCTTTCACTTGAAACCGCCATT 660
Query 916 CTTGGTTACAACGAATTCAAAGGTCCGATTCCACCGGAATTTGGAAACATAAACAGCCTC 975
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 661 CTTGGTTACAACGAATTCAAAGGTCCGATTCCACCGGAATTTGGAAACATAATCAGCCTC 720
Query 976 AAGTACCTTGATTTGGCCATCGGAAAGCTCAGTGGTGAGATTCCGTCAGAGCTTGGGAAG 1035
|||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 721 AAGTACCTCGATTTGGCCATCGGAAAGCTCAGTGGTGAGATTCCGTCGGAGCTCGGGAAG 780
Query 1036 CTCAAGTCACTCGAGACGCTTCTCCTGTACGAGAATAACTTCACCGGAACAATTCCAAGA 1095
||||||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||
Sbjct 781 CTCAAGTCACTCGAGACGCTTCTTCTGTACGAGAATAACTTCACCGGAAAAATCCCAAGA 840
Query 1096 GAGATAGGAAGCATTACCACGCTAAAGGTTCTTGATTTCTCCGATAATGCGTTAACCGGC 1155
||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 841 GAGATCGGAAACATTACCACGCTAAAGGTTCTTGATTTCTCCGATAATGCCTTAACCGGC 900
Query 1156 GAGATTCCAATGGAGATAACAAAGCTCAAGAACCTCCAGCTACTGAACCTGATGCGCAAC 1215
||||||||| |||||||||| ||||| ||||| || ||||||||||||||||||||||||
Sbjct 901 GAGATTCCAGTGGAGATAACCAAGCTGAAGAATCTGCAGCTACTGAACCTGATGCGCAAC 960
Query 1216 AAACTCTCAGGCTCCATTCCTCCCGCCATCAGCAGTCTAGCA-CAGTTACAAGTCCTCGA 1274
|||||||| ||||| |||||||||| ||||||| ||||| | |||||||||||||||||
Sbjct 961 AAACTCTCCGGCTCTATTCCTCCCGGGATCAGCAATCTAG-AGCAGTTACAAGTCCTCGA 1019
Query 1275 GCTCTGGAACAACACGCTCTCCGGCGAGTTACCAAGCGATCTCGGGAAGAATTCTCCATT 1334
||||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||| |
Sbjct 1020 GCTCTGGAACAACACACTCTCCGGCGAGTTGCCAAGCGATCTTGGGAAGAATTCTCCACT 1079
Query 1335 ACAATGGCTTGACGTTTCTTCAAACTCCTTCTCAGGCGAGATTCCTTCAACTCTATGCAA 1394
||||||||||||||||||||||||||||||||||||| |||||||||| || ||||||||
Sbjct 1080 ACAATGGCTTGACGTTTCTTCAAACTCCTTCTCAGGCAAGATTCCTTCGACCCTATGCAA 1139
Query 1395 CAAGGGAAATCTAACCAAGCTCATTCTCTTCAACAACACCTTCACCGGTCAGATTCCAGC 1454
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1140 CAAGGGAAATCTAACCAAGCTCATTCTGTTCAACAACACCTTCACCGGTCAGATTCCAGC 1199
Query 1455 GACTCTTTCCACTTGCCAATCACTAGTTCGTGTTAGAATGCAGAACAATCTACTAAACGG 1514
|||||| ||||||||||| |||||||||||||| || ||||| |||||||||||||||||
Sbjct 1200 GACTCTATCCACTTGCCAGTCACTAGTTCGTGTCAGGATGCAAAACAATCTACTAAACGG 1259
Query 1515 ATCAATTCCTATCGGCTTTGGCAAGCTTGAGAAGCTACAGAGACTCGAACTAGCCGGAAA 1574
|||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 1260 TTCAATTCCCATCGGCTTTGGCAAGCTTGAGAAGCTACAAAGACTCGAATTAGCCGGAAA 1319
Query 1575 TCGTCTCAGCGGAGGGATCCCTGGAGACATCTCCGATTCAGTTTCACTTTCTTTCATTGA 1634
|||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||||
Sbjct 1320 TCGTCTCACCGGAGGGATCCCCAGAGACATCTCGGATTCAGTTTCGCTTTCTTTCATTGA 1379
Query 1635 TTTCTCAAGAAACCAGATCCGATCATCTCTCCCTTCCACAATCCTCTCAATTCACAACCT 1694
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 1380 TTTCTCAAGAAACCAGATCCGATCATCCCTCCCTTCCACAATCCTCTCAATTCACAATCT 1439
Query 1695 ACAGGCGTTTTTAGTCGCCGATAACTTTATCTCCGGCGAAGTTCCAGACCAATTCCAGGA 1754
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CCAGGCGTTTTTAGTCGCCGAGAACTTTATCTCCGGCGAAGTTCCAGACCAATTCCAGGA 1499
Query 1755 TTGTCCTTCACTCTCTAATCTCGATCTCTCATCAAACACTCTCACTGGCACTATCCCTTC 1814
||||||||||||||| |||||||||||||||||||| |||||||| || |||||||||||
Sbjct 1500 TTGTCCTTCACTCTCGAATCTCGATCTCTCATCAAATACTCTCACAGGAACTATCCCTTC 1559
Query 1815 AAGCATTGCTTCATGCGAGAAGCTCGTAAGCCTCAACCTAAGAAATAATAACCTCACCGG 1874
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1560 CAGCATTGCTTCATGCGAGAAGCTTGTAAGCCTCAACCTAAGAAACAATAACCTCACCGG 1619
Query 1875 CGAAATCCCTAGACAGATCACGACAATGTCTGCATTAGCAGTGCTAGATCTCTCCAACAA 1934
|| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 1620 AGAGATCCCTAGACAGATCACGACAATGTCTGCATTAGCTGTGCTCGATCTCTCCAACAA 1679
Query 1935 TTCCTTAACCGGAGTACTACCAGAGAGCATCGGAACATCTCCAGCTCTGGAACTCCTAAA 1994
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1680 TTCCTTAACCGGAGTACTCCCAGAGAGCATCGGAACATCTCCAGCTCTGGAACTCCTAAA 1739
Query 1995 CGTCTCATACAACAAGCTCACAGGTCCAGTCCCTATCAACGGCTTTCTCAAAACCATAAA 2054
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1740 TGTCTCCTACAACAAGCTCACAGGTCCAGTCCCTATCAACGGCTTTCTCAAAACCATAAA 1799
Query 2055 TCCAGATGATCT-AAGAGGAAACTCCGGTCTCTGCGGCGGCGTTCTACCACCGTGTAGTA 2113
|||||||||||| || |||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1800 TCCAGATGATCTGAA-AGGAAACTCCGGACTCTGCGGCGGCGTTCTTCCACCGTGTAGCA 1858
Query 2114 AATTCCAAAGAGCAACATCGAG-TCACA-GTAGCCTCCACGGGAAACGAATTGTCGCCGG 2171
|||||||| |||||||||| || ||||| | ||| ||||||||||||| |||||||||||
Sbjct 1859 AATTCCAAGGAGCAACATC-AGGTCACAAG-AGCTTCCACGGGAAACGGATTGTCGCCGG 1916
Query 2172 ATGGTTGATTGGGATAGCATCGGTTCTAGCTCTAGGGATTCTCACCATTGTTACGAGAAC 2231
|||||| ||||||||||||||||||||||||||||||||||||||||| ||| | |||||
Sbjct 1917 ATGGTTAATTGGGATAGCATCGGTTCTAGCTCTAGGGATTCTCACCATCGTTGCCAGAAC 1976
Query 2232 TCTGTACAAGAA-ATGGTATTCTAACGGATTCTGCGGCGACGAGACGGCGAGCAAAGGTG 2290
||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1977 TCTATACAA-AAGATGGTATTCCAACGGATTCTGCGGCGACGAGACGGCGAGCAAAGGTG 2035
Query 2291 AATGGCCTTGGAGATTAATGGCGTTTCATAGATTAGGGTTTACAGCTTCCGATATCTTGG 2350
|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2036 AATGGCCTTGGAGACTAATGGCGTTTCATAGATTAGGGTTCACAGCTTCCGATATCTTGG 2095
Query 2351 CATGTATCAAAGAATCAAACATGATCGGAATGGGAGCAACCGGAATCGTGTACAAAGCAG 2410
|||||||||||||||| |||||||| ||||||||||| || |||||||| ||||||||||
Sbjct 2096 CATGTATCAAAGAATCGAACATGATAGGAATGGGAGCTACAGGAATCGTATACAAAGCAG 2155
Query 2411 AAATGTCACGATCAAGCACAGTTCTCGCCGTGAAGAAGCTCTGGAGATCTGCCGCGGATA 2470
||||||||||||| |||||||| ||||||||||||||||| |||||||| ||||| ||||
Sbjct 2156 AAATGTCACGATCGAGCACAGTACTCGCCGTGAAGAAGCTTTGGAGATCCGCCGCCGATA 2215
Query 2471 TTGAAGATGGAACCACCGGAGATTTCGTAGGCGAAGTTAACCTCCTCGGGAAATTGAGAC 2530
| |||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 2216 TCGAAGATGGAACCACCGGAGATTTCGTCGGCGAAGTAAACCTCCTCGGGAAATTGAGAC 2275
Query 2531 ACAGAAACATAGTGAGGCTCCTAGGGTTCTTATACAACGACAAAAACATGATGATCGTAT 2590
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2276 ACAGAAACATCGTGAGGCTCCTAGGGTTCTTATACAACGACAAAAACATGATGATCGTAT 2335
Query 2591 ATGAATTCATGCTCAACGGAAACCTTGGTGATGCGATTCACGGCAAAAACGCCGCCGGGA 2650
| ||||||||||||||||||||||| || || ||||||||||||||||||||||||||||
Sbjct 2336 ACGAATTCATGCTCAACGGAAACCTCGGCGACGCGATTCACGGCAAAAACGCCGCCGGGA 2395
Query 2651 GACTTCTCGTTGATTGGGTTTCGCGTTACAACATCGCGTTAGGTGTAGCTCACGGCCTCG 2710
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2396 GGCTTCTCGTTGATTGGGTTTCGCGTTACAACATCGCGTTAGGTGTAGCTCACGGCCTAG 2455
Query 2711 CTTACCTCCACCATGATTGTCATCCTCCGGTGATTCACAGAGACATCAAATCCAACAATA 2770
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2456 CTTACCTCCACCATGATTGTCATCCTCCAGTGATTCACAGAGACATCAAATCCAACAATA 2515
Query 2771 TCTTGCTCGACGCGAATCTCGACGCCAGAATCGCCGATTTTGGCCTCGCCAGGATGATGG 2830
||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||
Sbjct 2516 TCTTGCTCGACGCGAATCTCGACGCCAGAATCGCCGACTTTGGCCTCGCGAGGATGATGG 2575
Query 2831 CGAGGAAGAAAGAAACCGTTTCAATGGTCGCCGGTTCTTACGGTTACATTGCTCCCGAGT 2890
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2576 CGAGGAAGAAAGAAACCGTTTCAATGGTCGCCGGTTCTTACGGTTACATTGCTCCCGAGT 2635
Query 2891 ATGGATACACTTTGAAGGTGGATGAGAAGATAGACATATACAGCTACGGCGTCGTACTAT 2950
| |||||||| ||||||||||||||||||||||| |||||||| |||||||||||| | |
Sbjct 2636 ACGGATACACATTGAAGGTGGATGAGAAGATAGATATATACAGTTACGGCGTCGTATTGT 2695
Query 2951 TGGAGCTGTTAACCGGAAGAAGACCATTGGAACCGGAGTTTGGAGAATCAGTAGACATTG 3010
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 2696 TGGAGCTGTTAACCGGAAGAAGACCATTGGAGCCGGAGTTCGGAGAATCAGTAGACATAG 2755
Query 3011 TGGAGTGGGTGAGAAGGAAGATAAGAGACAACATATCACTAGAAGAAGCATTAGATCCTA 3070
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 2756 TGGAGTGGGTGAGAAGGAAGATAAGAGACAATATATCACTAGAAGAAGCATTAGATCCTG 2815
Query 3071 ACGTAGGAAACTGCAGATATGTGCAAGAAGAGATGCTTTTAGTTCTACAGATTGCTCTTC 3130
| |||||||||||||||||||| |||||||||||||||||||||||||| || |||||||
Sbjct 2816 ATGTAGGAAACTGCAGATATGTTCAAGAAGAGATGCTTTTAGTTCTACAAATCGCTCTTC 2875
Query 3131 TCTGCACTACAAAGCTCCCGAAAGACAGACCTTCGATGAGAGATGTGATATCGATGCTCG 3190
| ||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2876 TATGCACCACGAAGCTCCCGAAAGACAGACCTTCGATGAGAGACGTGATATCGATGCTCG 2935
Query 3191 GAGAGGCTAAACCGAGGAGGAAAAGTAATAGTAATGAAGAGAACACTAGTCGTAGCTTGG 3250
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2936 GAGAGGCTAAACCGAGGAGGAAAAGTAATAGTAATGAAGAGAACACTAGTCGTAGCTTGG 2995
Query 3251 CCGAGAAACATTCATCGGTTTTTAGTACTTCACCTGTAAATGGCCTTCTTTAG 3303
||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct 2996 CCGAGAAACATACATCGGTTTTTAATACTTCACCTGTAAATGGCCTTCTTTAG 3048
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 131184454131
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5