BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28660.2
Length=890
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945162 jgi|Araly1|945162|scaffold_701391.1 743 0.0
> Ahg945162 jgi|Araly1|945162|scaffold_701391.1
Length=593
Score = 743 bits (402), Expect = 0.0
Identities = 464/494 (94%), Gaps = 4/494 (1%)
Strand=Plus/Plus
Query 243 GGCATTGTCTTATCTTCATGCTCTGTTCTTCCCATCAAAAGCTCATCTTTCACTGGATCC 302
|||||||||||||||||||||||| |||||||||||||| |||| ||||||||||| |||
Sbjct 91 GGCATTGTCTTATCTTCATGCTCTCTTCTTCCCATCAAAGGCTCCTCTTTCACTGGCTCC 150
Query 303 CCTGTTTCTCTCCCGCGGGCTCAACCATCATCCCGAACAGCTCTAAGACCGATGAAACCC 362
|||||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||||
Sbjct 151 CCTGTTTCTCTCCCGCGGGCTCAACCCTCATCCCGAACAGCTCTGAGACCGAGGAAACCC 210
Query 363 GTCTCTATCACGATGATGGTAAAGCCGGCGCTCCAATTCATCCAAGGGACGGATGAGATG 422
||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||
Sbjct 211 GTCTCTATCACGATGATGGTAAAACCGACGCTCCAATTCATTCAAGGGACGGATGAGATG 270
Query 423 ACAATCCCTGATGTTAAGCTGACTCGATCAAGAGACGGAAGC-AACGGAATGGCACTGTT 481
|| ||||||||||||||||||||||| ||||||||||| | | |||||||||||||| ||
Sbjct 271 ACCATCCCTGATGTTAAGCTGACTCGGTCAAGAGACGG-ATCTAACGGAATGGCACTCTT 329
Query 482 CTCTTTCGACCAACCATCCGTTTTCGACTCGAGCGGTGAAGTCGGAGAGATTACAGGATT 541
|||||| || || ||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 330 CTCTTTTGATCAGCCATCGGTTTTCGACTCGAGCGGTGAAGTCGGGGAGATTACAGGATT 389
Query 542 GTACATGATTGATGAGGAAGGTGTGATTCAGTCGACGGATGTGAACGCGAGATTCGTGAA 601
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 390 GTACATGATCGATGAGGAAGGTGTGATTCAGTCGACGGATGTAAACGCGAGATTCGTGAA 449
Query 602 TGGGAAACCGGAAGGGATTGTGGCGAAGCACATAATGCGATCG-CCGAAAGAATGGGACA 660
||||||||||||||||||||||||||| ||||| |||||| | ||||||||||||||||
Sbjct 450 TGGGAAACCGGAAGGGATTGTGGCGAAACACATTATGCGAA-GTCCGAAAGAATGGGACA 508
Query 661 GGTTCATGAGGTTTATGGAGCGATACTCGGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 720
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 509 GGTTCATGAGGTTTATGGAGCGATACTCAGACCAGAATGGCTTGCAGTTTGTTAAGAAGC 568
Query 721 AATGAGGTTGGAGA 734
|||||||| |||||
Sbjct 569 AATGAGGTGGGAGA 582
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32976323205
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5