BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28670.1
Length=1878
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889268 jgi|Araly1|889268|Al_scaffold_0007_1254 2904 0.0
> Ahg889268 jgi|Araly1|889268|Al_scaffold_0007_1254
Length=1878
Score = 2904 bits (1572), Expect = 0.0
Identities = 1783/1885 (95%), Gaps = 14/1885 (1%)
Strand=Plus/Plus
Query 1 ATGGCATCGACGTTAATCTCTTCTTTGGCCGTTGTCTTGCCGTTAACGTTACTAGCTCCG 60
|||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||
Sbjct 1 ATGGCAGCGACGTTAATCTCTTCTTTGGCCGTTCTCTTACCGTTAACGTTACTAGCTCCG 60
Query 61 TCAATGTCCATGAAAATCTCTCGAATCGACGTCCTCGGATATATTTGTAACAACGGCACC 120
||||| ||||||||||||||||||||||||||| |||| | ||||||||||||||||||
Sbjct 61 TCAATTTCCATGAAAATCTCTCGAATCGACGTCATCGGTTGGATTTGTAACAACGGCACC 120
Query 121 GTCTC-CAACGAGGAGGCTTACCGGAGATCATATCAGATTAACCTCGACGCGATCAGAGG 179
||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 121 GTCTCTC-ACGAGGAGGCTTACCGGAGATCTTATCAGATTAACCTCGACGCGATCAGAGA 179
Query 180 TGATATGAGGCATGTCAAGTTTGGAACTCATGAACATGGAGATCCTCCGGAGAGAATGTA 239
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 180 TGATATGAGGCATGTCAAGTTTGGAACTCATGAACATGGAGATTCTCCGCAGAGAATGTA 239
Query 240 CGTTTTGTCGCAGTGTGTTAGCGATCTCTCATCCGACGAATGTAGTTTATGTTGGTCACG 299
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 240 CGTTTTGTCGCAGTGTGTTAGCGATCTCTCATCCGACGAATGCAGTTTGTGTTGGTCGCG 299
Query 300 TGCTACCGATCTCCTCTCTCAATGTTTCCCGGCCACCGGTGGTTGGTTTCACCTCGACGG 359
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 300 TGCTACCGATCTCCTCTCTCAATGTTTTCCGGCCACCGGTGGTTGGTTTCACCTTGACGG 359
Query 360 TTGTTTCGTTAGAGCTGATAATTACAGCTTCTATCAAGAACCTGTTTCTCATCAGGACAC 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGTTTCGTTAGAGCTGATAATTACAGCTTCTATCAAGAACCTGTTTCTCATCAGGACAC 419
Query 420 CAAGATATGTGCTAGTGATAAGGAGAAGTCTGCAGAATTCAAAGGTTTAGTAAAGGAAGT 479
|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct 420 CAAGATATGTGCTAGTGACAAGGAGAAGTCTGCAGAATTGAAAGGTTTAGTAAAGGAAGT 479
Query 480 GACCAAATCCATTGTTGAGGCGGCTCCATATAGTCGAGGTTTCTCGGTGGCTAAAATGGG 539
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 480 GACCAAATCCATTGTTGAGACGGCTCCATATAGTCAAGGTTTCTCGGTGGCTAAAATGGG 539
Query 540 AATCCG-GGATTTAACGGTTTACGGGTTGGGAGTATGCTGGCGAACGCTAAATGATGAGT 598
|| ||| || |||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 540 AACCCGTGG-TTTAACGGTTTACGGGTTGGGAATATGCTGGCGAACGCTAGATGATGAGT 598
Query 599 TGTGCAAATTATGCTTAGCAGATGGAGCTTTATCGGT-TACGAGCTGCT-TACCATCCAA 656
||||||||||||||||||||||||||||||||||||| | | ||||| | ||||||||||
Sbjct 599 TGTGCAAATTATGCTTAGCAGATGGAGCTTTATCGGTCT-CTAGCTG-TGTACCATCCAA 656
Query 657 AGAAGGTTTTGCCTTGAATGCAGGATGCTACTTGCGTTACTCTAACTATACCTTCTATAA 716
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 657 AGAAGGTTTTGCCTTGAATGCAGGCTGCTACTTGCGTTACTCTAACTATACCTTTTATAA 716
Query 717 TGAACGTGGATTGCTTGCTATGAGCTTCACTAAAGAAAACCTTACGTATATATTTGTTAT 776
||||||||||||||| |||||| || || |||||||| || | ||||||| ||| |
Sbjct 717 CGAACGTGGATTGCTTTCTATGAATTTAACAAAAGAAAATTTTGTGCATATATTCGTTCT 776
Query 777 TTCCATGGTGGGTGTGTTGGCTATTGCAGCTGGATTTTGGTGTGGAAAATGCTTCTATAT 836
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 777 TTCTATGGTGGGTGTGTTGGCTATTGCAGCTGGATTTTGGTGTGGAAAATGCATCTATAT 836
Query 837 GCGAACTAGTCCAAAGAAGAAGATTAAAGGAACTAAGACTAAAAAGTTTCATTTGTTTGG 896
||||||||||||||||||||| ||||||||||||||| |||||||| ||| ||||||||
Sbjct 837 ACGAACTAGTCCAAAGAAGAAGCTTAAAGGAACTAAGATTAAAAAGTCTCACTTGTTTGG 896
Query 897 ACATCTAAGGATAGAGAAAGAGTCAGAGTCAATATGTACTGAGTCACACTTGATGAGCTT 956
|||||||||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||
Sbjct 897 ACATCTAAGGATAGAGAAGGAGTCAGAGTCTATATGTAATGACTCACACTTGATGAGCTT 956
Query 957 TGAGTATTCAACTCTTAAAAAAGCAACCAACAACTTCAATGAGAGTTGCAAGCTTGGTGT 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 957 TGAGTATTCAACTCTTAAAAAAGCAACCAACAACTTCAATGAGAGTTGCAAGCTTGGTGT 1016
Query 1017 TGGTGGATATGGTGAAGTCTTCAAGGGAACTCTGTCTGACGGTAGAGAAATTGCGATTAA 1076
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1017 TGGTGGATATGGGGAAGTCTTCAAGGGAACTCTGTCTGACGGTAGAGAAATTGCGATTAA 1076
Query 1077 ACGACTACATGTATCAGGAAAGAAGCCACGGGATGAGATCCATAATGAAATAGATGTGAT 1136
||| || ||| || ||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1077 ACGGCTGCATATAACAGGAAAGAAGCCACGGGACGAGATCCATAATGAAATAGATGTAAT 1136
Query 1137 TAGTAGATGCCAACACAAGAACTTGGTTAGGCTCTTAGGTTGCTGCTTCACTAACATGAA 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 TAGTAGATGCCAACACAAGAACTTGGTTAGGCTCTTAGGTTGCTGCTTCACTAACATGAA 1196
Query 1197 TAGTTTCATTGTTTATGAGTTCCTCGCCAATACAAGCCTTGATCATA-TCTTGTTTAACC 1255
|||||||||||||||||||||||||||||| |||||||| ||||| | |||| || ||||
Sbjct 1197 TAGTTTCATTGTTTATGAGTTCCTCGCCAACACAAGCCTAGATCA-AGTCTTATTCAACC 1255
Query 1256 CGGAGAAGAAGAAAGAGCTTGACTGGAAGAAGAGGCGAACCATAATCTTAGGAACAGCTG 1315
| ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||
Sbjct 1256 CCGAGAAGAAGAAAGAGCTCGACTGGAAGAAGAGGCGGACAATAATCTTAGGAACAGCTG 1315
Query 1316 AAGGGTTAGAGTATCTTCACGAAACGTGCAAGATCATTCACAGAGATATCAAAGCAAGCA 1375
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1316 AAGGTTTAGAATATCTTCATGAAACGTGCAAGATCATTCACAGAGATATCAAAGCAAGCA 1375
Query 1376 ACATTCTGTTAGACTTAAAGTACAAACCTAAAATATCAGATTTTGGATTAGCCAAGTTTT 1435
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1376 ACATTCTGTTAGACTTAAAGTACAAACCCAAAATTTCAGATTTTGGATTAGCCAAGTTTT 1435
Query 1436 ATCCAGAAGGTGGCAAAGACATCCCTGCTTCTTCTCTTTCTCCTTCTTCAATTGCGGGCA 1495
||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||
Sbjct 1436 ATCCAGAAGGTGGCAAAGACATCCCTGCTCCTTCTCCTTCTCCTTCTTCAATCGCGGGCA 1495
Query 1496 CTCTAGGATATATGGCTCCTGAATACATTAGCAAGGGAAGACTAAGCAATAAAATCGATG 1555
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1496 CTCTAGGATATATGGCTCCTGAATACATTAGCAAGGGAAGACTAAGCAATAAAATCGATG 1555
Query 1556 CTTATAGCTTCGGAGTTCTTGTTCTCGAAATAACCAGCGGTTTTCGAAACAATAAGTTCC 1615
|||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||||
Sbjct 1556 CTTATAGCTTCGGAGTCCTTGTTCTCGAGATAACCAGCGGTTTTCGAAACAACAAATTCC 1615
Query 1616 GGTCTGATAACTCCCTTGAAACCTTAGTTACTCAAGTTTGGAAATGTTTTGCTTCAAACA 1675
| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 1616 GCTCTGATAACTCCCTTGAAACCTTAGTCACTCAAGTTTGGAAATGTTTTGCTTCAGACA 1675
Query 1676 AGATGGAAGAGATGATAGACAAAGATATGGGAGAAGATACAGATAAGCA-AGAAATGAAG 1734
||||||| ||||||||||||||||||||||||||||| ||||||||| | |||| |||||
Sbjct 1676 AGATGGAGGAGATGATAGACAAAGATATGGGAGAAGAAACAGATAAG-AGAGAAGTGAAG 1734
Query 1735 AGAGTGA-TGCAGATCGGTTTGTTGTGCACACAAGAGTCTCCACAACTTCGTCCAACAAT 1793
||||| | ||||||| ||||||||||| ||||||||||||||||| ||||||||||| ||
Sbjct 1735 AGAGT-ACTGCAGATTGGTTTGTTGTGTACACAAGAGTCTCCACAGCTTCGTCCAACGAT 1793
Query 1794 GTCTAAGGTTATACAAATGGTTAGTTCCACAGATATTGTATTGCCCACTCCTACTAAACC 1853
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1794 GTCTAAGGTTATACAAATGGTTAGTTCCACAGATATTGTATTGCCCACTCCTACTAAACC 1853
Query 1854 ACCTTTCCTTCATGATTCCATGTAA 1878
|||||||||||||||||||||||||
Sbjct 1854 ACCTTTCCTTCATGATTCCATGTAA 1878
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70543133740
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5