BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28680.2
Length=1814
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491894 jgi|Araly1|491894|fgenesh2_kg.7__1327__AT4G28680.1 2532 0.0
> Ahg491894 jgi|Araly1|491894|fgenesh2_kg.7__1327__AT4G28680.1
Length=1725
Score = 2532 bits (1371), Expect = 0.0
Identities = 1620/1736 (93%), Gaps = 33/1736 (2%)
Strand=Plus/Plus
Query 1 ATG-TTTAAACCCCAACATATGTATGACAGGGAATTTGGTACCGGCAACGGCTACAGCAA 59
||| |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 1 ATGTTTTAAA-CCCAACATATGCATGACAGGGAATTTGGTAACGGCAACGGCTACAGCAA 59
Query 60 CGGGAACGGCTACACCAATGGAAACGGC--C-AC-AC--CAACGG----A--AACGGCAA 107
||| |||||||||||||| || |||||| | || || |||||| | ||||||||
Sbjct 60 CGGCAACGGCTACACCAACGGCAACGGCAACAACAACGGCAACGGCTACACCAACGGCAA 119
Query 108 ---TTACA--A-CGGCAATGGCCACGTTAATGGTAACGGAAAAGCTAACGGAGCCAAGGT 161
||| | |||||||||| ||||||||| ||||||| ||||||||||||| |||||
Sbjct 120 CGGCAACAGCATCGGCAATGGCAACGTTAATGTTAACGGAGAAGCTAACGGAGCGAAGGT 179
Query 162 GGTAAAGATGAAACCAATGGACAGTGAGTTGCTGAGAGAGCAAGGTCACATAATGGTTGA 221
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 GATAAAGATGAAACCAATGGACAGTGAGTTGCTGAGAGAGCAAGGTCACATAATGGTCGA 239
Query 222 TTTTATTGCTGATTATTACAAAAACCTTCAAGACTCGCCTCAAGATTTCCCTGTTCTGTC 281
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 240 TTTTATTGCTGATTATTACAAAAACCTTCAAGACTCGCCTCAAGATTTCCCTGTTCTTTC 299
Query 282 CCAAGTTCAGCCTGGTTATCTCCGTGACATGTTGCCTGATTCAGCACCTGAACGACCTGA 341
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 300 CCAAGTTCAGCCTGGTTATCTCCGTGACATGTTGCCTGATTCAGCACCAGACCAACCTGA 359
Query 342 ATCGTTAAAAGAACTTCTCGACGATGTTTCGAAGAAGATAATGCCGGGGATAACTCATTG 401
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 360 ATCGTTGAAAGAACTTCTCGACGACGTTTCGAAGAAGATAATGCCGGGGATAACTCATTG 419
Query 402 GCAAAGCCCGAGTTACTTTGCATACTATGCATCAAGCACGAGTGTGGCTGGATTCTTAGG 461
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 420 GCAAAGCCCGAGTTACTTTGCGTACTATGCATCAAGCACGAGTGTGGCCGGATTCTTGGG 479
Query 462 AGAGATGCTTAACGCCGGCCTGAGCGTCGTCGGTTTTACCTGGCTCACTTCTCCTGCCGC 521
||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 480 AGAGATGCTCAACGCCGGCCTGAGCGTCGTCGGTTTCACTTGGCTCACTTCTCCTGCCGC 539
Query 522 TACTGAGCTCGAAATCATCGTTCTTGATTGGCTTGCTAAATTGCTACAACTCCCCGACCA 581
||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 540 TACTGAGCTGGAAATCATCGTTCTTGATTGGCTTGCGAAATTGCTACAACTCCCTGACCA 599
Query 582 TTTTCTCTCCACAGGAAATGGAGGAGGAGTAATCCAAGGGACAGGATGTGAAGCAGTGCT 641
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 600 TTTTCTCTCGACAGGAAATGGAGGAGGAGTGATCCAAGGGACAGGATGTGAAGCAGTGCT 659
Query 642 TGTGGTAGTATTAGCTGCTAGAGACAGAATTCTGAAGAAAGTTGGCAAAACATTACTTCC 701
||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct 660 TGTGGTAGTGTTAGCTGCTAGAGACAGGATTTTGAAGAAAGTTGGCAAAACATTACTTCC 719
Query 702 TCAACTTGTTGTCTATGGCTCTGACCAAACCCATTCTAGTTTCCGAAAAGCTTGTCTGAT 761
|| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 720 TCGACTTGTTGTCTATGCCTCTGACCAAACCCATTCTAGTTTCCGAAAGGCTTGTCTGAT 779
Query 762 TGGTGGGATACATGAAGAAAACATTAGGCTGCTCAAAACTGATTCTTCCACAAACTATGG 821
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 780 TGGTGGAATACATGAAGAAAACATTAGGCTGCTCAAAACTGATTCTTCCACGAACTATGG 839
Query 822 AATGCCTCCAGAATCACTTGAGGAAGCTATTTCTCATGATCTCGCTAAGGGTTTTATCCC 881
|||||||||| |||||||||| |||||||||||||||||||||||| |||||||||||||
Sbjct 840 AATGCCTCCAAAATCACTTGAAGAAGCTATTTCTCATGATCTCGCTGAGGGTTTTATCCC 899
Query 882 TTTCTTCATTTGTGCCACTGTTGGCACAACGTCTTCAGCAGCGGTTGATCCTTTGGTCCC 941
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 900 TTTCTTCATTTGTGCTACTGTTGGCACAACGTCTTCAGCGGCGGTTGATCCTTTGGTCCC 959
Query 942 ATTGGGGAACATCGCAAAGAAATATGGGATATGGTTGCATGTGGATGCAGCTTATGCAGG 1001
||||||||| || ||||||||||| ||||||||| |||| || |||||||||||||||||
Sbjct 960 ATTGGGGAAAATTGCAAAGAAATACGGGATATGGATGCACGTAGATGCAGCTTATGCAGG 1019
Query 1002 GAATGCATGTATATGTCCAGAATATCGAAAATTTATTGACGGGATTGAAAACGCAGACTC 1061
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1020 GAATGCGTGTATATGTCCAGAATATCGAAAATTTATTGACGGGATTGAAAACGCAGACTC 1079
Query 1062 CTTTAACATGAATGCTCATAAATGGTTATTTGCTAATCAAACTTGTTCACCTCTTTGGGT 1121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1080 CTTTAACATGAATGCTCATAAATGGTTATTTGCTAATCAAACTTGTTCACCTCTTTGGGT 1139
Query 1122 TAAGGATCGATACTCTCTCATTGATGCTCTCAAAACAAATCCCGAGTATCTAGAATTCAA 1181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAAGGATCGATACTCTCTCATTGATGCTCTCAAAACAAATCCCGAGTATCTAGAATTCAA 1199
Query 1182 GGTCAAGGTTTCCAAAAAAGATACGGTCGTAAATTATAAAGATTGGCAAATTTCTCTCTC 1241
||| || | || |||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1200 GGT-----TT-CTAAGAAAGATGCGGTCGTGAATTATAAAGATTGGCAAATTTCTCTCTC 1253
Query 1242 TCGGAGATTCAGATCACTGAAGTTATGGATGGTTTTACGGCTCTATGGTTCCGAGAACTT 1301
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1254 TCGGAGATTCAGATCGTTGAAGTTATGGATGGTTTTACGGCTCTATGGTTCAGAGAACTT 1313
Query 1302 AAGAAACTTTATAAGAGACCATGTCAATCTCGCTAAGCATTTTGAAGATTATGTAGCTCA 1361
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1314 GAGAAATTTTATAAGAGACCACGTCAATCTCGCTAAGCATTTTGAAGATTATGTAGCTCA 1373
Query 1362 AGATCCA-AGTTTTGAGGTTGTCACTACTCGGTACTTTTCACTCGTTTGCTTTCGCCTTG 1420
||||||| | ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1374 AGATCCACA-TTTTGAGGTTGTCACTACTCGATACTTTTCACTCGTTTGCTTTCGCCTTG 1432
Query 1421 CGCCAGTTGACGGCGATGAAGACCAA-TGTAACGAACGTAACCGTGAACTGCTTGCGGCT 1479
||| | ||||||||||||||| || ||||||||||| |||||||||||||| || ||
Sbjct 1433 TGCCTGATGACGGCGATGAAGAG-AAGTGTAACGAACGGAACCGTGAACTGCTCGCCGCC 1491
Query 1480 GTTAACTCCACTGGCAAGATATTCATCTCTCACACGGCTCTATCTGGA-AAATTCGTTTT 1538
||||||||||| |||||||| |||||||| |||||||||||||| ||| |||||| ||||
Sbjct 1492 GTTAACTCCACCGGCAAGATCTTCATCTCCCACACGGCTCTATC-GGATAAATTCATTTT 1550
Query 1539 ACGATTTGCTGTTGGTGCACCGTTAACGGAAGAGAAGCATGTCACTGAAGCATGGCAGAT 1598
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1551 ACGATTTGCTGTTGGTGCACCGTTAACGGAGGAGAAGCATGTCACTGAAGCATGGCAGAT 1610
Query 1599 TATACAGAAACATGCCTCCAAATTTACACGCAACGACCATTATTAATAATATTTCAAAAG 1658
|||||||||||||||||||||||||| ||||||| |||||||||| ||||||||||||
Sbjct 1611 CATACAGAAACATGCCTCCAAATTTACCCGCAACGGCCATTATTAAGAATATTTCAAAAT 1670
Query 1659 AAACCCACTATCTTTTTTATTTCGATCAATAAAGTCCTTTATTTTCAACGATTTCC 1714
||||||||||||||||| |||| | ||||||||||||| ||| |||||||||||||
Sbjct 1671 AAACCCACTATCTTTTT-ATTTTGCTCAATAAAGTCCTCTATCTTCAACGATTTCC 1725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68105358060
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5