BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28690.1 Length=1593 Score E Sequences producing significant alignments: (Bits) Value Ahg328829 jgi|Araly1|328829|fgenesh1_pm.C_scaffold_7001056 1293 0.0 > Ahg328829 jgi|Araly1|328829|fgenesh1_pm.C_scaffold_7001056 Length=1314 Score = 1293 bits (700), Expect = 0.0 Identities = 919/1021 (90%), Gaps = 29/1021 (3%) Strand=Plus/Plus Query 144 ATGAGTTCGATGAATCATATCGTTGTAGATGTTAGTTCGGACGAAGATGATGATAAACCA 203 |||| ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 1 ATGACTTCGATGAATCATATCGTTGTAGATGTCAGTTCGGACGAAGACGATGACAAACCA 60 Query 204 GTAGATTACTCTTATTTGTTAGACCG-AATTCTGGGAGTTTCCGATGAGAAGAAACCCAT 262 |||||||||||||||||||| || || |||||||||| |||||||||||||||||||||| Sbjct 61 GTAGATTACTCTTATTTGTTCGA-CGAAATTCTGGGAATTTCCGATGAGAAGAAACCCAT 119 Query 263 CAAAGGTACTGTTTTGTTGAATCCAACGGTGGAGAATGAAGACGACGATGACGATTGTGT 322 |||| |||||| ||||||||||||||| | | || |||||||| ||||||||||| Sbjct 120 CAAAAGTACTGATTTGTTGAATCCAAC----G-G--TG--GACGACGACGACGATTGTGT 170 Query 323 GATTTTGGATTTTGATCCTACGGCGAAGGAGACTGTGATTGAAACTTGTGAAACTGATGG 382 ||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| Sbjct 171 GATTTTGGATTGTGATCCTACGGCGAAGGAGACTGCGATTGAAACTTGTGGAACTGATGA 230 Query 383 AGTTCTTGTAGTAGGACAAAAGGGTGAGGTAGCTTGTAGGGATTTTCCGCATCCGCGACA 442 |||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 231 AGTTCTTGTAGTTGGGCAAAAGGGTGAGATAGCTTGTAGGGATTTTCCGCATCCGCGACA 290 Query 443 TGCTTGTGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTTTGTGAGATGTGTCA 502 |||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 291 TGCTTGCGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTCTGTGAGATGTGTCA 350 Query 503 CTGTTATGTTTGTGACACCCGTGCTCCGTGTACTTACTGGTTCAGTGGCGGGATCTCTAA 562 |||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| || Sbjct 351 CTGTTATGTTTGTGACACTCGTGCTCCGTGTCCTTACTGGTTTAGTGGTGGGATCTCCAA 410 Query 563 CACTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAATGA-TCAACGGGAATGCA 621 || ||||||||||||||||||||||||||||||||||||||| || |||||||||||||| Sbjct 411 CATTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAA-GAATCAACGGGAATGCA 469 Query 622 TCAGAACTGGAAATATGTTACCTCGACCTGTTTCGAAACCTGCTTCGGCCAAATTACAAT 681 |||| || |||||||| ||||||||||||||||||||||||| ||| |||||||||||| Sbjct 470 TCAGGACCAGAAATATGCTACCTCGACCTGTTTCGAAACCTGCCTCGACCAAATTACAAT 529 Query 682 TTAAACGTGC-TCCACGGCGTCCATCTGTATA-TGTACCTGTACCGTTGCTCCAAAACTC 739 ||||||| || ||||||||||| |||||| | ||||||||| |||| |||| ||||||| Sbjct 530 TTAAACG-GCCTCCACGGCGTCGATCTGT-TCCTGTACCTGTTCCGTCGCTCAAAAACTC 587 Query 740 GTCT------GGAACCAACTTAGGAATCCGGGCTTGCTCCAAATCTACTAAGG-TTGCAA 792 |||| |||||| | || ||||||||||||||||||| | |||||| || |||||| Sbjct 588 GTCTTCCCCTGGAACCCAGTTTGGAATCCGGGCTTGCTCCACAGCTACTA-GGCTTGCAA 646 Query 793 TTCACCCAAAAACATACACTAGACCCGGTCATAGAACCGAGCAATCAAGAACCGTCCAAC 852 ||||| ||||| |||||| ||||||||| ||||||||||||||||||||||| |||| | Sbjct 647 CTCACCGAAAAAGATACACCAGACCCGGTTATAGAACCGAGCAATCAAGAACCCTCCAGC 706 Query 853 AAAATC-CTGGGTCACAACCTCACGCTATGCAGTCATTACCAAATCACAAAAGTGGCTCT 911 |||||| | |||| ||| ||||| ||| ||||||||||||||||||||| | |||||||| Sbjct 707 AAAATCTC-GGGTTACAGCCTCAGGCTGTGCAGTCATTACCAAATCACAGAGGTGGCTCT 765 Query 912 AATAATGGTAATCCAAGTCCTCAAGTTGTCCCTTCCAATCCATATGTATTGACTCGACGG 971 ||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| | Sbjct 766 AATAATGGTAATCCAAGTCCTCAAGCTGTCCCTTCCAATCCATACGTATGGACTCGAAGA 825 Query 972 CCAAGTAATGGCGTTTATCCTCCGGAAAACAGTGTACAGAATATTTCTCAAGGCTTACAA 1031 |||||||| || |||||||||| |||||||||||||||||| ||||||||||||| |||| Sbjct 826 CCAAGTAAAGGTGTTTATCCTCTGGAAAACAGTGTACAGAACATTTCTCAAGGCTCACAA 885 Query 1032 CCTACCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAACCTACCCGCTT-TGCTCC 1090 |||||| |||||||||||| |||||||||||||||| |||||||||||| || |||||| Sbjct 886 CCTACCCATTATGCTCCTCCCATGGCTTCACAAGGCGCACAACCTACCCT-TTATGCTCC 944 Query 1091 TCCCGTGGCTTCACAAGGCTCACAGCCTACCTGCTGTGCTCCTCCCGTTGCTTCACAAGG 1150 |||| ||||||||||||||||||| |||||| ||| ||||| |||||| ||||||||||| Sbjct 945 TCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCATCCCGTGGCTTCACAAGG 1004 Query 1151 C 1151 | Sbjct 1005 C 1005 Score = 523 bits (283), Expect = 1e-147 Identities = 395/447 (88%), Gaps = 16/447 (4%) Strand=Plus/Plus Query 1058 TTCACAAGGCTCACAACCTACCCGCTT-TGCTCCTCCCGTGGCTTCACAAGGCTCACAGC 1116 ||| ||||||||||||||||||| || |||||||||| |||||||||||||| |||| | Sbjct 870 TTCTCAAGGCTCACAACCTACCC-ATTATGCTCCTCCCATGGCTTCACAAGGCGCACAAC 928 Query 1117 CTA-CCTGCTGTGCTCCTCCCGTTGCTTCACAAGGCTCGCAGCCTACCCGATATGCTCCT 1175 ||| ||| | |||||||||| | |||||||||||||| || |||||||| ||||||| | Sbjct 929 CTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCAT 987 Query 1176 CCCGTGGCTTCACAAGGCAATGCACAGCGGATTGTTACTGGTTCTATCTCAACTGTGCCG 1235 |||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||| Sbjct 988 CCCGTGGCTTCACAAGGCAATGCACAGCGGATCGTTACTAGTTATATCTCAACTGTGCCG 1047 Query 1236 GTATCTCAGAGCAAAGAG---GCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1292 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1048 GTATCTCAGAGCAAAGAGTACGCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1107 Query 1293 CAGACGAATGCAGTCCCAACTATGACTCCTAATCCTCCGGCGGTCCAGCAGCAACAACAA 1352 ||||||| |||||| || |||| |||||||||||||||||| |||||| |||||||| Sbjct 1108 CAGACGAGTGCAGTTCCGGCTATAACTCCTAATCCTCCGGCGAACCAGCAACAACAACAT 1167 Query 1353 CAACAATCAGGAAGAAGTAACGATAGAGTATTGTCCGAGTTTGAAGACTGGCTCTTGGAC 1412 |||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||| Sbjct 1168 CAACAATCAGGAAGAAGTAAAGATAAAGTATTGTCCGAGTTTGAAGCCTGGCTCTTGGAC 1227 Query 1413 GACTCAACCTTGCCTTGTCCCTCGTCTGTTCAAGACAATACA--TTG-A-A---AA--TC 1463 |||||||| ||| ||||||||| ||||| | |||||||||| || | | || || Sbjct 1228 GACTCAACTTTGTCTTGTCCCTTGTCTGGTGAAGACAATACCGCTTCTACATTCAAGATC 1287 Query 1464 GATTTCGAAACCTTCTTGAATGATTGA 1490 |||||| |||||||||||||||||||| Sbjct 1288 GATTTCCAAACCTTCTTGAATGATTGA 1314 Score = 130 bits (70), Expect = 3e-29 Identities = 87/95 (92%), Gaps = 2/95 (2%) Strand=Plus/Plus Query 1016 TTCTCAAGGCTTACAACCTA-CCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAAC 1074 ||| |||||| |||||||| ||| ||||||||||| ||||||||||||||||||||||| Sbjct 912 TTCACAAGGCGCACAACCTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAAC 970 Query 1075 CTACCCGCTTTGCTCCTCCCGTGGCTTCACAAGGC 1109 ||||||||| ||||| ||||||||||||||||||| Sbjct 971 CTACCCGCTATGCTCATCCCGTGGCTTCACAAGGC 1005 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59687413915 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5