BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28690.1
Length=1593
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328829 jgi|Araly1|328829|fgenesh1_pm.C_scaffold_7001056 1293 0.0
> Ahg328829 jgi|Araly1|328829|fgenesh1_pm.C_scaffold_7001056
Length=1314
Score = 1293 bits (700), Expect = 0.0
Identities = 919/1021 (90%), Gaps = 29/1021 (3%)
Strand=Plus/Plus
Query 144 ATGAGTTCGATGAATCATATCGTTGTAGATGTTAGTTCGGACGAAGATGATGATAAACCA 203
|||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 1 ATGACTTCGATGAATCATATCGTTGTAGATGTCAGTTCGGACGAAGACGATGACAAACCA 60
Query 204 GTAGATTACTCTTATTTGTTAGACCG-AATTCTGGGAGTTTCCGATGAGAAGAAACCCAT 262
|||||||||||||||||||| || || |||||||||| ||||||||||||||||||||||
Sbjct 61 GTAGATTACTCTTATTTGTTCGA-CGAAATTCTGGGAATTTCCGATGAGAAGAAACCCAT 119
Query 263 CAAAGGTACTGTTTTGTTGAATCCAACGGTGGAGAATGAAGACGACGATGACGATTGTGT 322
|||| |||||| ||||||||||||||| | | || |||||||| |||||||||||
Sbjct 120 CAAAAGTACTGATTTGTTGAATCCAAC----G-G--TG--GACGACGACGACGATTGTGT 170
Query 323 GATTTTGGATTTTGATCCTACGGCGAAGGAGACTGTGATTGAAACTTGTGAAACTGATGG 382
||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 171 GATTTTGGATTGTGATCCTACGGCGAAGGAGACTGCGATTGAAACTTGTGGAACTGATGA 230
Query 383 AGTTCTTGTAGTAGGACAAAAGGGTGAGGTAGCTTGTAGGGATTTTCCGCATCCGCGACA 442
|||||||||||| || |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 231 AGTTCTTGTAGTTGGGCAAAAGGGTGAGATAGCTTGTAGGGATTTTCCGCATCCGCGACA 290
Query 443 TGCTTGTGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTTTGTGAGATGTGTCA 502
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 291 TGCTTGCGCTAAGTACCCGTTCAAATCCACATTACACCAGACGTTCTGTGAGATGTGTCA 350
Query 503 CTGTTATGTTTGTGACACCCGTGCTCCGTGTACTTACTGGTTCAGTGGCGGGATCTCTAA 562
|||||||||||||||||| |||||||||||| |||||||||| ||||| |||||||| ||
Sbjct 351 CTGTTATGTTTGTGACACTCGTGCTCCGTGTCCTTACTGGTTTAGTGGTGGGATCTCCAA 410
Query 563 CACTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAATGA-TCAACGGGAATGCA 621
|| ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 411 CATTGATCACTGTCATGCCAATGATAAAGAGAAGACATGGAA-GAATCAACGGGAATGCA 469
Query 622 TCAGAACTGGAAATATGTTACCTCGACCTGTTTCGAAACCTGCTTCGGCCAAATTACAAT 681
|||| || |||||||| ||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 470 TCAGGACCAGAAATATGCTACCTCGACCTGTTTCGAAACCTGCCTCGACCAAATTACAAT 529
Query 682 TTAAACGTGC-TCCACGGCGTCCATCTGTATA-TGTACCTGTACCGTTGCTCCAAAACTC 739
||||||| || ||||||||||| |||||| | ||||||||| |||| |||| |||||||
Sbjct 530 TTAAACG-GCCTCCACGGCGTCGATCTGT-TCCTGTACCTGTTCCGTCGCTCAAAAACTC 587
Query 740 GTCT------GGAACCAACTTAGGAATCCGGGCTTGCTCCAAATCTACTAAGG-TTGCAA 792
|||| |||||| | || ||||||||||||||||||| | |||||| || ||||||
Sbjct 588 GTCTTCCCCTGGAACCCAGTTTGGAATCCGGGCTTGCTCCACAGCTACTA-GGCTTGCAA 646
Query 793 TTCACCCAAAAACATACACTAGACCCGGTCATAGAACCGAGCAATCAAGAACCGTCCAAC 852
||||| ||||| |||||| ||||||||| ||||||||||||||||||||||| |||| |
Sbjct 647 CTCACCGAAAAAGATACACCAGACCCGGTTATAGAACCGAGCAATCAAGAACCCTCCAGC 706
Query 853 AAAATC-CTGGGTCACAACCTCACGCTATGCAGTCATTACCAAATCACAAAAGTGGCTCT 911
|||||| | |||| ||| ||||| ||| ||||||||||||||||||||| | ||||||||
Sbjct 707 AAAATCTC-GGGTTACAGCCTCAGGCTGTGCAGTCATTACCAAATCACAGAGGTGGCTCT 765
Query 912 AATAATGGTAATCCAAGTCCTCAAGTTGTCCCTTCCAATCCATATGTATTGACTCGACGG 971
||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||| |
Sbjct 766 AATAATGGTAATCCAAGTCCTCAAGCTGTCCCTTCCAATCCATACGTATGGACTCGAAGA 825
Query 972 CCAAGTAATGGCGTTTATCCTCCGGAAAACAGTGTACAGAATATTTCTCAAGGCTTACAA 1031
|||||||| || |||||||||| |||||||||||||||||| ||||||||||||| ||||
Sbjct 826 CCAAGTAAAGGTGTTTATCCTCTGGAAAACAGTGTACAGAACATTTCTCAAGGCTCACAA 885
Query 1032 CCTACCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAACCTACCCGCTT-TGCTCC 1090
|||||| |||||||||||| |||||||||||||||| |||||||||||| || ||||||
Sbjct 886 CCTACCCATTATGCTCCTCCCATGGCTTCACAAGGCGCACAACCTACCCT-TTATGCTCC 944
Query 1091 TCCCGTGGCTTCACAAGGCTCACAGCCTACCTGCTGTGCTCCTCCCGTTGCTTCACAAGG 1150
|||| ||||||||||||||||||| |||||| ||| ||||| |||||| |||||||||||
Sbjct 945 TCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCATCCCGTGGCTTCACAAGG 1004
Query 1151 C 1151
|
Sbjct 1005 C 1005
Score = 523 bits (283), Expect = 1e-147
Identities = 395/447 (88%), Gaps = 16/447 (4%)
Strand=Plus/Plus
Query 1058 TTCACAAGGCTCACAACCTACCCGCTT-TGCTCCTCCCGTGGCTTCACAAGGCTCACAGC 1116
||| ||||||||||||||||||| || |||||||||| |||||||||||||| |||| |
Sbjct 870 TTCTCAAGGCTCACAACCTACCC-ATTATGCTCCTCCCATGGCTTCACAAGGCGCACAAC 928
Query 1117 CTA-CCTGCTGTGCTCCTCCCGTTGCTTCACAAGGCTCGCAGCCTACCCGATATGCTCCT 1175
||| ||| | |||||||||| | |||||||||||||| || |||||||| ||||||| |
Sbjct 929 CTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAACCTACCCGCTATGCTCAT 987
Query 1176 CCCGTGGCTTCACAAGGCAATGCACAGCGGATTGTTACTGGTTCTATCTCAACTGTGCCG 1235
|||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||||
Sbjct 988 CCCGTGGCTTCACAAGGCAATGCACAGCGGATCGTTACTAGTTATATCTCAACTGTGCCG 1047
Query 1236 GTATCTCAGAGCAAAGAG---GCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1292
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1048 GTATCTCAGAGCAAAGAGTACGCAAAACAGTTTAGCCGGAATATGTATTCTGCTAATGTT 1107
Query 1293 CAGACGAATGCAGTCCCAACTATGACTCCTAATCCTCCGGCGGTCCAGCAGCAACAACAA 1352
||||||| |||||| || |||| |||||||||||||||||| |||||| ||||||||
Sbjct 1108 CAGACGAGTGCAGTTCCGGCTATAACTCCTAATCCTCCGGCGAACCAGCAACAACAACAT 1167
Query 1353 CAACAATCAGGAAGAAGTAACGATAGAGTATTGTCCGAGTTTGAAGACTGGCTCTTGGAC 1412
|||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 1168 CAACAATCAGGAAGAAGTAAAGATAAAGTATTGTCCGAGTTTGAAGCCTGGCTCTTGGAC 1227
Query 1413 GACTCAACCTTGCCTTGTCCCTCGTCTGTTCAAGACAATACA--TTG-A-A---AA--TC 1463
|||||||| ||| ||||||||| ||||| | |||||||||| || | | || ||
Sbjct 1228 GACTCAACTTTGTCTTGTCCCTTGTCTGGTGAAGACAATACCGCTTCTACATTCAAGATC 1287
Query 1464 GATTTCGAAACCTTCTTGAATGATTGA 1490
|||||| ||||||||||||||||||||
Sbjct 1288 GATTTCCAAACCTTCTTGAATGATTGA 1314
Score = 130 bits (70), Expect = 3e-29
Identities = 87/95 (92%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 1016 TTCTCAAGGCTTACAACCTA-CCTATTATGCTCCTCTCATGGCTTCACAAGGCTCACAAC 1074
||| |||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||
Sbjct 912 TTCACAAGGCGCACAACCTACCCT-TTATGCTCCTCCCATGGCTTCACAAGGCTCACAAC 970
Query 1075 CTACCCGCTTTGCTCCTCCCGTGGCTTCACAAGGC 1109
||||||||| ||||| |||||||||||||||||||
Sbjct 971 CTACCCGCTATGCTCATCCCGTGGCTTCACAAGGC 1005
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59687413915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5