BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G28700.1 Length=1515 Score E Sequences producing significant alignments: (Bits) Value Ahg945158 jgi|Araly1|945158|scaffold_701387.1 2307 0.0 > Ahg945158 jgi|Araly1|945158|scaffold_701387.1 Length=1560 Score = 2307 bits (1249), Expect = 0.0 Identities = 1431/1520 (94%), Gaps = 7/1520 (0%) Strand=Plus/Plus Query 1 ATGGCGTCG-GCTCTCTCTTGCTCTGCCTCTGATCTGATTCCAT-TACTATCAGGTGGAG 58 |||||| || | |||||||||||||||||||||||||||||| | ||||||| || |||| Sbjct 21 ATGGCGACGAG-TCTCTCTTGCTCTGCCTCTGATCTGATTCC-TCTACTATCCGGCGGAG 78 Query 59 CCAACGCCACCGCAGCAGCAGCCGCCGCTGAATACATCTGCGGGAGATTCGACACAGTCG 118 |||| |||||||| ||||| || |||||||||| |||||||||||||||||||||||||| Sbjct 79 CCAATGCCACCGCCGCAGCCGCTGCCGCTGAATTCATCTGCGGGAGATTCGACACAGTCG 138 Query 119 CCGGGAAATTCACTGATGCGGCTTACGCAATCGACAACACTTACCTTCTCTTCTCTGCTT 178 ||||||||||||| || ||||||||||| |||||||||||||||||||||||||| |||| Sbjct 139 CCGGGAAATTCACCGACGCGGCTTACGCCATCGACAACACTTACCTTCTCTTCTCCGCTT 198 Query 179 ACCTCGTTTTCGCGATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGATCCGTACGTGCAA 238 |||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| | Sbjct 199 ACCTCGTTTTCGCGATGCAGCTAGGATTCGCCATGCTCTGTGCCGGATCTGTACGTGCTA 258 Query 239 AAAACACGATGAACATTATGCTCACGAACGTCATCGACGCTGCAGCCGGAGGTCTCTTCT 298 ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 259 AAAACACGATGAACATTATGCTCACCAACGTCATCGACGCTGCAGCCGGAGGTCTGTTCT 318 Query 299 ATTATCTCTTCGGTTTCGCTTTTGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 358 |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 319 ATTACCTCTTCGGTTTCGCTTTCGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 378 Query 359 ATTTCTTTGGAATGTATGATTTTCCTCAACCTACGTTTGATTATCCTTATTTTCTATATC 418 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 379 ATTTCTTTGGAATGTATGATTTTCCTAAACCTACGTTTGATTATCCTTATTTTCTATATC 438 Query 419 AATGGACTTTCGCTATCGCCGCCGCTGGAATCACGAGTGGTTCGATAGCGGAGAGGACTC 478 ||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 439 AATGGACTTTCGCTATCGCCGCCGCCGGAATCACCAGTGGTTCGATCGCGGAGAGGACTC 498 Query 479 AGTTCGTTGCGTATTTGATCTATTCTTCTTTCTTGACGGGTCTTGTTTACCCGATTGTGT 538 ||||||| |||||||||||||| ||| ||||| | ||||||||||||||||||||||||| Sbjct 499 AGTTCGTGGCGTATTTGATCTACTCTGCTTTCCTCACGGGTCTTGTTTACCCGATTGTGT 558 Query 539 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCGTCTCCGGCTAGATCTGAGAACCTTCTGT 598 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 559 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCTTCTCCGGCTAGATCTGAGAACCTTCTGT 618 Query 599 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGTGGTATTG 658 |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 619 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGAGGTATTG 678 Query 659 CTGGTTTATGGGGAGCTTTAATTGAAGGACCTAGGATTGGTCGGTTTGGAGTTGGGGGTA 718 ||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||| Sbjct 679 CTGGTTTATGGGGAGCTTTAATTGAAGGACCAAGAATTGGTCGGTTTGGAGATGGGGGTA 738 Query 719 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 778 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 739 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 798 Query 779 GGTTCGGATGGTACGGGTTTAACCCGGGCTCGTTTGCAACTATTTTTAAGGCGTATGGGG 838 ||||||||||||||||||||||||| || ||||| ||||| ||||||||| ||||||| | Sbjct 799 GGTTCGGATGGTACGGGTTTAACCCTGGATCGTTCGCAACCATTTTTAAGTCGTATGGAG 858 Query 839 AGACTCCAGGGAGCTCGTTTTACGGACAATGGAGCGCAGTTGGGAGAACCGCGGTAACAA 898 ||||||| |||| ||||||||||||||| |||||||| ||||| ||||| ||||| |||| Sbjct 859 AGACTCCGGGGAACTCGTTTTACGGACAGTGGAGCGCGGTTGGAAGAACGGCGGTTACAA 918 Query 899 CTACGTTAGCTGGTTGCACGGCGGCGTTAACGACTCTGTTTGGGAAAAGACTTATTGATG 958 | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 919 CCACGTTAGCTGGTTGCACGGCGGCGCTAACGACTCTGTTTGGGAAAAGACTTATTGATG 978 Query 959 GGTATTGGAATGTAACTGATGTTTGCAATGGTTTGTTAGGCGGGTTTGCGGCTATAACTA 1018 ||||||||||||||||||||||||| ||||||||||||||||| || || |||||||||| Sbjct 979 GGTATTGGAATGTAACTGATGTTTGTAATGGTTTGTTAGGCGGATTCGCTGCTATAACTA 1038 Query 1019 GCGGATGTTCGGTTGTGGAACCGTGGGCTGCGCTTGTATGTGGGTTTGTAGCCGCATGGG 1078 |||||||||||||||||||||||||||| |||||| |||| |||||||||||||| |||| Sbjct 1039 GCGGATGTTCGGTTGTGGAACCGTGGGCCGCGCTTATATGCGGGTTTGTAGCCGCGTGGG 1098 Query 1079 TGCTGATGGGATGCAATAGACTAGCGGAAAAGCTCCAATTTGATGATCCGTTGGAAGCGG 1138 |||||||||||| |||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 1099 TGCTGATGGGATTCAATAGACTAGCTGAAAAGCTCCAATTCGACGATCCGTTGGAAGCGG 1158 Query 1139 CTCAGCTTCACGGTGGTTGTGGTGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1198 ||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||| Sbjct 1159 CTCAGCTTCACGGCGGTTGCGGCGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1218 Query 1199 AAAGATACATTGCCGAGATCTTTGGAGGCGACCCGAATAGGCCTTTCGGATTGCTAATGG 1258 ||||||||||||| |||||||||||||| |||||||| ||||||| ||| |||||||||| Sbjct 1219 AAAGATACATTGCTGAGATCTTTGGAGGGGACCCGAACAGGCCTTACGGGTTGCTAATGG 1278 Query 1259 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGTTGGG 1318 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 1279 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGATGGG 1338 Query 1319 TTAGTGTGACAATGGGGACTCTGTTTTTTATTTTGCATAAGCTGAAACTGTTGAGGATAC 1378 |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| Sbjct 1339 TTAGTGTGACAATGGGGACTCTATTTTATATTTTGCATAAGCTGAAACTGTTGAGGATAC 1398 Query 1379 CGGCGGAGGATGAGATAGCTGGGGTGGATCCGACGAGTCACGGAGGGTTGGCTTATATGT 1438 |||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 1399 CGGCGGAGGATGAGATCGCCGGGGTGGATCCGACGAGTCATGGAGGGTTGGCTTATATGT 1458 Query 1439 ACACAGAAGATGAGATTAGGAATGGGATCATGGTTAGGAGAGTGGGTGGTGATAATGATC 1498 |||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| || Sbjct 1459 ACACAGAAGATGAGATCAGGAATGGGATCATGGTTAGGAGGGTGGGCGGTGATAATGCTC 1518 Query 1499 CC--AA-TGTAGGTGTTTGA 1515 || |||| |||||||| Sbjct 1519 AAGGAAATGTACGTGTTTGA 1538 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 56716374805 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5