BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28700.1
Length=1515
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945158 jgi|Araly1|945158|scaffold_701387.1 2307 0.0
> Ahg945158 jgi|Araly1|945158|scaffold_701387.1
Length=1560
Score = 2307 bits (1249), Expect = 0.0
Identities = 1431/1520 (94%), Gaps = 7/1520 (0%)
Strand=Plus/Plus
Query 1 ATGGCGTCG-GCTCTCTCTTGCTCTGCCTCTGATCTGATTCCAT-TACTATCAGGTGGAG 58
|||||| || | |||||||||||||||||||||||||||||| | ||||||| || ||||
Sbjct 21 ATGGCGACGAG-TCTCTCTTGCTCTGCCTCTGATCTGATTCC-TCTACTATCCGGCGGAG 78
Query 59 CCAACGCCACCGCAGCAGCAGCCGCCGCTGAATACATCTGCGGGAGATTCGACACAGTCG 118
|||| |||||||| ||||| || |||||||||| ||||||||||||||||||||||||||
Sbjct 79 CCAATGCCACCGCCGCAGCCGCTGCCGCTGAATTCATCTGCGGGAGATTCGACACAGTCG 138
Query 119 CCGGGAAATTCACTGATGCGGCTTACGCAATCGACAACACTTACCTTCTCTTCTCTGCTT 178
||||||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 139 CCGGGAAATTCACCGACGCGGCTTACGCCATCGACAACACTTACCTTCTCTTCTCCGCTT 198
Query 179 ACCTCGTTTTCGCGATGCAGCTCGGTTTCGCCATGCTCTGTGCCGGATCCGTACGTGCAA 238
|||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 199 ACCTCGTTTTCGCGATGCAGCTAGGATTCGCCATGCTCTGTGCCGGATCTGTACGTGCTA 258
Query 239 AAAACACGATGAACATTATGCTCACGAACGTCATCGACGCTGCAGCCGGAGGTCTCTTCT 298
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 259 AAAACACGATGAACATTATGCTCACCAACGTCATCGACGCTGCAGCCGGAGGTCTGTTCT 318
Query 299 ATTATCTCTTCGGTTTCGCTTTTGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 358
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 319 ATTACCTCTTCGGTTTCGCTTTCGCTTTTGGATCTCCTTCTAATGGATTCATCGGAAAAC 378
Query 359 ATTTCTTTGGAATGTATGATTTTCCTCAACCTACGTTTGATTATCCTTATTTTCTATATC 418
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 379 ATTTCTTTGGAATGTATGATTTTCCTAAACCTACGTTTGATTATCCTTATTTTCTATATC 438
Query 419 AATGGACTTTCGCTATCGCCGCCGCTGGAATCACGAGTGGTTCGATAGCGGAGAGGACTC 478
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 439 AATGGACTTTCGCTATCGCCGCCGCCGGAATCACCAGTGGTTCGATCGCGGAGAGGACTC 498
Query 479 AGTTCGTTGCGTATTTGATCTATTCTTCTTTCTTGACGGGTCTTGTTTACCCGATTGTGT 538
||||||| |||||||||||||| ||| ||||| | |||||||||||||||||||||||||
Sbjct 499 AGTTCGTGGCGTATTTGATCTACTCTGCTTTCCTCACGGGTCTTGTTTACCCGATTGTGT 558
Query 539 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCGTCTCCGGCTAGATCTGAGAACCTTCTGT 598
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 559 CGCATTGGTTTTGGTCTTCTGATGGTTGGGCTTCTCCGGCTAGATCTGAGAACCTTCTGT 618
Query 599 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGTGGTATTG 658
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 619 TTCAATCAGGTGTGATTGATTTCGCTGGCTCTGGTGTTGTTCATATGGTTGGAGGTATTG 678
Query 659 CTGGTTTATGGGGAGCTTTAATTGAAGGACCTAGGATTGGTCGGTTTGGAGTTGGGGGTA 718
||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 679 CTGGTTTATGGGGAGCTTTAATTGAAGGACCAAGAATTGGTCGGTTTGGAGATGGGGGTA 738
Query 719 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 739 AACCGGTTACGTTGCGTGGTCATAGTGCTACGTTGGTTGTTCTTGGAACGTTTTTGTTAT 798
Query 779 GGTTCGGATGGTACGGGTTTAACCCGGGCTCGTTTGCAACTATTTTTAAGGCGTATGGGG 838
||||||||||||||||||||||||| || ||||| ||||| ||||||||| ||||||| |
Sbjct 799 GGTTCGGATGGTACGGGTTTAACCCTGGATCGTTCGCAACCATTTTTAAGTCGTATGGAG 858
Query 839 AGACTCCAGGGAGCTCGTTTTACGGACAATGGAGCGCAGTTGGGAGAACCGCGGTAACAA 898
||||||| |||| ||||||||||||||| |||||||| ||||| ||||| ||||| ||||
Sbjct 859 AGACTCCGGGGAACTCGTTTTACGGACAGTGGAGCGCGGTTGGAAGAACGGCGGTTACAA 918
Query 899 CTACGTTAGCTGGTTGCACGGCGGCGTTAACGACTCTGTTTGGGAAAAGACTTATTGATG 958
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 919 CCACGTTAGCTGGTTGCACGGCGGCGCTAACGACTCTGTTTGGGAAAAGACTTATTGATG 978
Query 959 GGTATTGGAATGTAACTGATGTTTGCAATGGTTTGTTAGGCGGGTTTGCGGCTATAACTA 1018
||||||||||||||||||||||||| ||||||||||||||||| || || ||||||||||
Sbjct 979 GGTATTGGAATGTAACTGATGTTTGTAATGGTTTGTTAGGCGGATTCGCTGCTATAACTA 1038
Query 1019 GCGGATGTTCGGTTGTGGAACCGTGGGCTGCGCTTGTATGTGGGTTTGTAGCCGCATGGG 1078
|||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||
Sbjct 1039 GCGGATGTTCGGTTGTGGAACCGTGGGCCGCGCTTATATGCGGGTTTGTAGCCGCGTGGG 1098
Query 1079 TGCTGATGGGATGCAATAGACTAGCGGAAAAGCTCCAATTTGATGATCCGTTGGAAGCGG 1138
|||||||||||| |||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 1099 TGCTGATGGGATTCAATAGACTAGCTGAAAAGCTCCAATTCGACGATCCGTTGGAAGCGG 1158
Query 1139 CTCAGCTTCACGGTGGTTGTGGTGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1198
||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1159 CTCAGCTTCACGGCGGTTGCGGCGCGTGGGGGATTATTTTCACCGGGTTGTTCGCGGAGA 1218
Query 1199 AAAGATACATTGCCGAGATCTTTGGAGGCGACCCGAATAGGCCTTTCGGATTGCTAATGG 1258
||||||||||||| |||||||||||||| |||||||| ||||||| ||| ||||||||||
Sbjct 1219 AAAGATACATTGCTGAGATCTTTGGAGGGGACCCGAACAGGCCTTACGGGTTGCTAATGG 1278
Query 1259 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGTTGGG 1318
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1279 GAGGAGGAGGTAGGTTGCTTGCGGCGCACGTCGTTCAGATTTTGGTGATTACGGGATGGG 1338
Query 1319 TTAGTGTGACAATGGGGACTCTGTTTTTTATTTTGCATAAGCTGAAACTGTTGAGGATAC 1378
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1339 TTAGTGTGACAATGGGGACTCTATTTTATATTTTGCATAAGCTGAAACTGTTGAGGATAC 1398
Query 1379 CGGCGGAGGATGAGATAGCTGGGGTGGATCCGACGAGTCACGGAGGGTTGGCTTATATGT 1438
|||||||||||||||| || |||||||||||||||||||| |||||||||||||||||||
Sbjct 1399 CGGCGGAGGATGAGATCGCCGGGGTGGATCCGACGAGTCATGGAGGGTTGGCTTATATGT 1458
Query 1439 ACACAGAAGATGAGATTAGGAATGGGATCATGGTTAGGAGAGTGGGTGGTGATAATGATC 1498
|||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||| ||
Sbjct 1459 ACACAGAAGATGAGATCAGGAATGGGATCATGGTTAGGAGGGTGGGCGGTGATAATGCTC 1518
Query 1499 CC--AA-TGTAGGTGTTTGA 1515
|| |||| ||||||||
Sbjct 1519 AAGGAAATGTACGTGTTTGA 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56716374805
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5