BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28703.1

Length=550
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491890 jgi|Araly1|491890|fgenesh2_kg.7__1323__AT4G28703.1         640    0.0  


> Ahg491890 jgi|Araly1|491890|fgenesh2_kg.7__1323__AT4G28703.1
Length=473

 Score =  640 bits (346),  Expect = 0.0
 Identities = 407/435 (94%), Gaps = 10/435 (2%)
 Strand=Plus/Plus

Query  1    ACACACTCTCATACTTATCTCC-TCTTAGGTTTCTCATTTCTCTCGTCTCTTTGGAAAAT  59
            |||||||||||||||||||||| | ||| |||||||||||||||| ||||||| ||||||
Sbjct  1    ACACACTCTCATACTTATCTCCTTTTTACGTTTCTCATTTCTCTCCTCTCTTT-GAAAAT  59

Query  60   AAAAA-TTGTTGATCAGAAATAAAGGAGAAAAGAATAAATGGCAGATCAAAATCCAAGAA  118
            |||||  | ||||| ||||||||||||||  | ||||||||||||||||| |||||||||
Sbjct  60   AAAAACAT-TTGATTAGAAATAAAGGAGATCATAATAAATGGCAGATCAACATCCAAGAA  118

Query  119  TCATCGTCGAGCAAAACCCATCTCAAGCTCGTCTTGACGAACTAAAGTTCAAGTCATGGC  178
            ||||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||
Sbjct  119  TCATCGTCGAGAAAAACCCATCTCAAGTTCGTCTTGATGAACTAAAGTTCAAGTCATGGC  178

Query  179  CCAAGTGGGGATGTTCACCAGGGAAGTACCATTTGAAATATGAAGCAGAAGAGATATGTT  238
            ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct  179  CCAAGTGGGGATGTTCACCAGGGAAATACCATTTGAAATATGAAGCAGAAGAGATATGTT  238

Query  239  ACATTTTGAGGGGCAAAGTTAAGGTTTACCCTAAACCACCA-C--C---ATCATCATCGT  292
            ||||| ||||||| ||||||||||||||||||||||||||| |  |   ||||||||| |
Sbjct  239  ACATTGTGAGGGGTAAAGTTAAGGTTTACCCTAAACCACCATCATCATTATCATCATCAT  298

Query  293  CGGATGCAGAAGTTGAATGGTGTGTAGAGTTTGGGGCAGGTGATATTGTCACTTTTCCAA  352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  299  CGGATGCAGAAGTTGAATGGTGTGTAGAGTTTGGGGCAGGTGATATTGTCACTTTTCCAA  358

Query  353  AGGGACTTTCTTGTACTTGGGATGTATCTCTCTCTGTTGACAAGCACTACattttcctct  412
            ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct  359  AGGGACTTTCTTGTACTTGGGATGTTTCTCTCTCTGTTGACAAACACTACATTTTCCTCT  418

Query  413  cttcttaatttttgt  427
            |||||||||||||||
Sbjct  419  CTTCTTAATTTTTGT  433



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20069839814


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5