BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28706.4
Length=1598
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491889 jgi|Araly1|491889|fgenesh2_kg.7__1322__AT4G28706.3 1832 0.0
> Ahg491889 jgi|Araly1|491889|fgenesh2_kg.7__1322__AT4G28706.3
Length=1393
Score = 1832 bits (992), Expect = 0.0
Identities = 1181/1271 (93%), Gaps = 17/1271 (1%)
Strand=Plus/Plus
Query 28 TCTCTCACACTCGTTGACCaaaaaaaaa-----aCTCTCTCT-T-TCACTGAGAAATGCT 80
|||||| ||||||||||||||||||||| |||||||| | ||||| |||||||||
Sbjct 1 TCTCTCTCACTCGTTGACCAAAAAAAAACCCTCTCTCTCTCTCTGTCACTCAGAAATGCT 60
Query 81 CTGCTTCACTCATGTCCCACCTCTTCCTCTGTTCTCCACCTCCGGTATCTATCTTCCGGC 140
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 61 CTGCTTCACTCATGTCCCACCTCTTCCTCTCTTTTCCACCTCCGGTATCTATCTTCCGGC 120
Query 141 CTCCA-GACGATTCACTAGTTTCAGGATTAGAATGTCTTCTTCTTCCTCCATCGATTCTG 199
|| || |||||||||| |||||||||| ||||||| |||||||||||| | || ||||
Sbjct 121 CT-CACGACGATTCACAAGTTTCAGGACTAGAATG---TCTTCTTCCTCCGTAGACTCTG 176
Query 200 TTCCTCCTCCACCGGATAACGCAATCGTCCTTGGTTGTGGTGGAATCGCTGTAGATTTCT 259
|||||||||| |||||||| || |||||||||||||||||||| |||||||||||||||
Sbjct 177 TTCCTCCTCCGCCGGATAATGCCATCGTCCTTGGTTGTGGTGGCATCGCTGTAGATTTCC 236
Query 260 TAGCGACGGTGGATTCTTATCCTCAAGCTGACGACAAGATCCGAAGCACTAGCCTAAAGG 319
||||||| |||||||||||||||||| ||||||| ||||||||||||||||| |||||||
Sbjct 237 TAGCGACTGTGGATTCTTATCCTCAACCTGACGATAAGATCCGAAGCACTAGTCTAAAGG 296
Query 320 TGCAAGGAGGTGGAAATGCTGCAAATGCGTTAACTTGTGCTGCTCGTTTGGGATTGAATT 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 TGCAAGGAGGTGGAAATGCTGCAAATGCGTTAACTTGTGCTGCTCGTTTGGGATTGAATT 356
Query 380 CGAGACTGATTAGTAAGGTAGCGAATGACTCTCAAGGAAAAGGCATGTTGGAGGAGCTTG 439
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||
Sbjct 357 CGAGACTGATTAGTAAGGTAGCGAACGACTCTCAAGGAAAGGGTATGTTGGAGGAGCTTG 416
Query 440 AAGCTGATGGTGTGGATACTTCTTTTATTGTGGTCTCTAAAGAGGGTAATTCACCATTTA 499
|||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||
Sbjct 417 AAGCTGATGGTGTGGATACTTCCTTTCTTGTGGTCTCTAAAGAGGGCAATTCACCATTTA 476
Query 500 CCTATATCTTAGTTGACAACCAAACGAAAACGCGTACTTGTATTCACACGCCTGGAGACC 559
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 477 CCTATATCATAGTTGACAACCAAACGAAAACGCGTACTTGTATTCACACGCCTGGAGACC 536
Query 560 CACCTATGTTACCAACTGACCTTTCTCAATCGAGTATGCTATCAGCGCTAGACCGAGCCA 619
| || |||||||||||||| |||||||||||||| ||| | ||||| |||||| |||| |
Sbjct 537 CCCCCATGTTACCAACTGAACTTTCTCAATCGAGCATGTTCTCAGCTCTAGACAGAGCAA 596
Query 620 GCATTGTATACTTTGATGTAAGATTACACGAAACAGCTTTGGTTATTGCAAAAGAGGCAA 679
|||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||
Sbjct 597 GCATTGTATACTTTGATGTAAGATTACACGAAACGGCCTTGGTGATTGCAAAAGAGGCAA 656
Query 680 GTCGCAAGAAGATACCTATTTTAGTTGATACAGAGaaaaaaaGAGATGGTTTAGATGATC 739
|||||||||||||||||||| |||||||||||||||| |||||||||||||||||||| |
Sbjct 657 GTCGCAAGAAGATACCTATTCTAGTTGATACAGAGAAGAAAAGAGATGGTTTAGATGAAC 716
Query 740 TCTTGCCATTCGCCGACTACGTTGTCTG-TCCAG-AAAATTTCCCTCAGACATGGACAGA 797
|||||| |||||||||||||| |||||| || || |||||| ||||||||||||||||||
Sbjct 717 TCTTGCAATTCGCCGACTACGCTGTCTGCTC-AGCAAAATT-CCCTCAGACATGGACAGA 774
Query 798 AGTGTCTTCAACTCCTGGTGCACTTGTTTCCATGTTGTTGAGATTGCCTAAACTGAAATT 857
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GGTGTCTTCAACTCCTGGTGCACTTGTTTCCATGTTGTTGAGATTGCCTAAACTGAAATT 834
Query 858 TGTGATCGTGACCTCAGGTGAACATGGGTGCTTAATGGTTCAAAGAGCTTCAAAAGCAGA 917
|||||||||||||| |||||| | || ||||||||||||||||||||||||| ||||||
Sbjct 835 TGTGATCGTGACCTTGGGTGAAGAAGGATGCTTAATGGTTCAAAGAGCTTCAACAGCAGA 894
Query 918 AGTATTTGAATCTCAAGAGACAGACATTGAAAGCTTGTTGGAGACACTGAAGCATAGAAA 977
|||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||
Sbjct 895 AGTATTTGAATCTCAAGAGATAGACATTGAGAGCTTGTTGGAGACACTGAAGCATAGAAA 954
Query 978 AGACTCAACGACAACATTTCCAACATGTGTTTCATCGGAGACAACAAAGCTGAAGGCCAA 1037
||||||||| ||||||||||||||||||||||| ||||||||| |||| |||||||||||
Sbjct 955 AGACTCAACCACAACATTTCCAACATGTGTTTCGTCGGAGACAGCAAAACTGAAGGCCAA 1014
Query 1038 CGGGGTAGGAACAATGACCGGAAGATTGTTTCTCGGAACAGCGGAGAAAATTCCTCCAGA 1097
|||||||||||| ||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct 1015 TGGGGTAGGAACAGTGACCGGAAGATTATTTCTTGGAACAGCAGAGAAAATTCCTCCAGA 1074
Query 1098 AGAGCTTGTAGACACCACTGGTGCTGGCGATGCATTCATAGGAGCTGTTCTATATGCCAT 1157
||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1075 CGAGCTTGTAGACACCACCGGTGCCGGCGATGCATTCATAGGAGCAGTTCTATATGCCAT 1134
Query 1158 ATGCGCCGGCATGCCCCCAGAGAAAATGTTACCATTTGCTGCTCAAGTGGCTGGTTGCAG 1217
|||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct 1135 ATGCGCGGGCATGCCCCCAGAGAAAATGTTACCGTTTGCTGCTCAAGTGGCTGGCTGCAG 1194
Query 1218 CTGCCGGGCTTTGGGAGCTCGCACGGGTCTTCCTCACCGTACAGATCCTAGACTTGTACC 1277
||| || ||| ||||||||||||| ||||||||||||||| |||||||||||||||||||
Sbjct 1195 CTGTCGAGCTATGGGAGCTCGCACTGGTCTTCCTCACCGTGCAGATCCTAGACTTGTACC 1254
Query 1278 CTTTCTGAGTT 1288
||||||| |||
Sbjct 1255 CTTTCTG-GTT 1264
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59877865140
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5