BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28720.1
Length=1674
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491885 jgi|Araly1|491885|fgenesh2_kg.7__1318__AT4G28720.1 2708 0.0
Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1 363 3e-99
> Ahg491885 jgi|Araly1|491885|fgenesh2_kg.7__1318__AT4G28720.1
Length=1679
Score = 2708 bits (1466), Expect = 0.0
Identities = 1616/1686 (96%), Gaps = 19/1686 (1%)
Strand=Plus/Plus
Query 1 ACCATTTCCAATACAA-CTTCCATTGA-----T-tctctctctctctctctctACTAAAA 53
|||||||||||||||| ||| |||||| | ||||||||||||||||||||||||||
Sbjct 1 ACCATTTCCAATACAACCTT-CATTGATTCTCTCTCTCTCTCTCTCTCTCTCTACTAAAA 59
Query 54 CTTTCAAATTCTCTTACTTTCAAT-ACTTATTAAAGAAACTTATaaaaaaaGAATGGAGA 112
| ||||||||||||| || ||||| | | ||| ||||| || ||||| |||||||||||
Sbjct 60 CCTTCAAATTCTCTTTCTCTCAATAAATCGTTACAGAAAGTT-TAAAACAAGAATGGAGA 118
Query 113 ATATGTTTCGTTTGATGGATCAAGATCAGGATTTAACTAA-TAACCGGTGCATTTGGGTC 171
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct 119 ATATGTTTCGTTTGATGGATCAAGATCAGGATTTAAC-AACTAACCGGTGCATTTGGGTC 177
Query 172 AACGGACCGGTCATCGTCGGAGCTGGACCGTCGGGGTTAGCGACGGCGGCTTGTCTCCAT 231
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 178 AACGGACCGGTCATCGTCGGAGCAGGACCGTCGGGGTTAGCGACGGCGGCTTGTCTCCAT 237
Query 232 GAACAAAACGTTCCTTTCGTTGTTCTCGAGAGAGCAGATTGTATTGCTTCTCTATGGCAA 291
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 238 GAACAAAACGTTCCTTTCGTTGTTCTTGAGAGAGCAGATTGTATTGCTTCTCTTTGGCAA 297
Query 292 AAACGTACTTACGATCGTCTCAAGCTTCACCTTCCTAAGCAGTTTTGTCAATTACCGAAA 351
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 298 AAACGTACTTACGATCGTCTCAAGCTTCACCTGCCTAAGCAGTTTTGTCAGTTACCGAAA 357
Query 352 ATGCCCTTCCCTGAGGACTTCCCGGAGTACCCGACGAAGCGTCAGTTCATCGACTACCTT 411
||||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 358 ATGCCCTTCCCGGAGGATTTCCCGGAGTACCCTACGAAGCGTCAGTTCATCGACTACCTT 417
Query 412 GAGTCTTACGCTACCCGGTTCGAGATCAACCCTAAGTTCAACGAGTGTGTGCAGACTGCT 471
||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| |||
Sbjct 418 GAGTCTTACGCAACCCGGTTCGAGATCAACCCCAAGTTCAACGAGTGTGTACAGACCGCT 477
Query 472 CGGTTCGATGAGACCAGTGGCTTGTGGCGAGTCAAGACCGTGTCGAAGAGTGAGTCGACT 531
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 CGGTTCGATGAGACCAGTGGCTTGTGGCGAGTCAAGACCGTGTCGAAGAGTGAGTCGACT 537
Query 532 CAGACCGAGGTCGAGTATATTTGCCGGTGGCTTGTGGTGGCTACGGGAGAAAATGCGGAG 591
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 538 CAGACCGAGGTCGAGTATATTTGCCGGTGGCTTGTGGTGGCTACTGGAGAAAATGCGGAG 597
Query 592 AGAGTGATGCCGGAGATTGATGGTCTTTCTGAGTTTTCCGGTGAGGTGATTCACGCTTGT 651
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 598 AGAGTGATGCCGGATATTGATGGACTTTCTGAGTTTTCCGGTGAGGTGATTCACGCTTGT 657
Query 652 GATTACAAGTCCGGCGAGAAATTCGCCGGGAAAAAAGTTCTCGTCGTTGGTTGTGGAAAC 711
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 658 GATTACAAGTCCGGCGATAAATTCGCCGGGAAAAAAGTTCTAGTCGTTGGTTGTGGAAAC 717
Query 712 TCCGGCATGGAAGTTTCTCTTGACCTAGCAAACCATTTCGCTAAGCCTTCCATGGTCGTG 771
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 TCCGGCATGGAAGTTTCTCTTGACCTAGCAAACCATTTCGCTAAGCCTTCCATGGTCGTA 777
Query 772 AGAAGCTCTCTTCACGTGATGCCGAGGGAAGTAATGGGTAAATCAACGTTTGAGCTTGCA 831
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 AGAAGCTCCCTTCACGTGATGCCGAGGGAAGTAATGGGTAAATCAACGTTTGAGCTTGCA 837
Query 832 ATGAAGATGTTAAGATGGTTTCCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTAAGT 891
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 838 ATGAAGATGTTAAGATGGTTTCCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTGAGC 897
Query 892 TGGATGGTTCTTGGAAACATCGAGAAATACGGTTTGAAACGACCAGAGATGGGTCCAATG 951
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 898 TGGATGGTTCTTGGAAACATCGAGAAATACGGTTTGAAACGACCCGAGATGGGTCCAATG 957
Query 952 GAGCTAAAAAGCGTGAAAGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATC 1011
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 958 GAGCTAAAGAGCGTGAAAGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATC 1017
Query 1012 CGGTTAGGAAAGATCAACGTGGTTCCAGGGATCAAAAGGTTTAACGGAAACAAAGTCGAA 1071
|||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 1018 CGGTCAGGAAAGATCAACGTGGTTCCAGGGATCAAAAGGTTTAACGGTAACCAAGTCGAA 1077
Query 1072 CTTGTCAATGGAGAACAACTAGACGTAGACTCAGTTGTTCTAGCTACTGGTTACCGCAGC 1131
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 1078 CTTGTCAATGGAGAACAACTAGACGTAGACTCAGTTGTTCTAGCTACTGGCTATCGCAGT 1137
Query 1132 AACGTCCCATATTGGCTACAAGAGAATGAGTTCTTTGCAAAGAATGGTTTCCCAAAGACA 1191
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1138 AACGTCCCATATTGGCTACAAGAGAACGAGTTCTTTGCAAAGAATGGTTTCCCGAAGACA 1197
Query 1192 GTAGCTGACAACAATGGTTGGAAAGGAAGGACAGGATTGTATGCGGTTGGGTTTACGAGG 1251
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1198 GTAGCTGACAACAATGGTTGGAAAGGAAGGACAGGATTGTATGCGGTTGGGTTTACGAGG 1257
Query 1252 AAAGGGCTCTCAGGTGCGTCAATGGACGCGGTTAAGATCGCACAAGACATAGGCTCTGTT 1311
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||
Sbjct 1258 AAAGGGCTCTCAGGTGCGGCAATGGACGCGGTTAAAATCGCACAAGACATTGGCTCTGTT 1317
Query 1312 TGGCAACTTGAAACAAAACAACCCACGAAACGCTCAAGGGGTTCTCTTCGAAGGTGTATC 1371
||| |||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct 1318 TGGAAACTTGAAACAAAACAACCCACAAAACGCTCAAGGGGTTCTCTTCGAAGATGTATC 1377
Query 1372 TCTCAACAGTTCTAATTTTTAGGaaaaaaaaGATTAGAGTTTTAGGACAGAGATCACTGA 1431
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||
Sbjct 1378 TCTCAACAGTTCTAATTTTTAGGAAAAAAA-GATTAGAGTTTTAGGACAGAGATCGCTGA 1436
Query 1432 CAAAAGAGAAGAGCCCTCTCCTGAAGACCCAAAGCGAATCAAAGGGTGTTGTGCGTGttt 1491
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1437 CAAAAGAGAAGAGCCCTCTCCTGAAGACCCAAAGTGAATCAAAGGGTGTTGTGCGTGTTT 1496
Query 1492 ttttGTTACCTCCTCCACTTAGT-GTTTTGGGCGTTTTGTGTAAACAGAGGAAGATGTGG 1550
|||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1497 TTTTGTTACCTCCTCCACTT-GTTGTTTTGGGCGTTTTGTGTAAACAGAGGAAGATGTGG 1555
Query 1551 CCttttgttttctacttttttacaatctttttttttacatacatttttaacaattatttt 1610
|||||||||||||| ||||| || |||||||||||||||||| |||||||||||||||||
Sbjct 1556 CCTTTTGTTTTCTA-TTTTT-ACTATCTTTTTTTTTACATACTTTTTTAACAATTATTTT 1613
Query 1611 tt-gggggtgggttctttgattttttt-GTACAAGTTTATGTTAACATCTATATTGTATA 1668
|| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||||
Sbjct 1614 TTTGGGGGTGGGTTCTTTGATTTTTTTTGTACAAGTTTATGTTAACATTTATATTGTATA 1673
Query 1669 CACTTT 1674
||||||
Sbjct 1674 CACTTT 1679
> Ahg494616 jgi|Araly1|494616|fgenesh2_kg.8__432__AT5G43890.1
Length=1278
Score = 363 bits (196), Expect = 3e-99
Identities = 663/883 (75%), Gaps = 53/883 (6%)
Strand=Plus/Plus
Query 157 CGGTGCATTTGGGTCAACGGACCGGTCATCGTCGGAGCTGGACCGTCGGGGTTAGCGACG 216
|||||||||||||| ||||| ||||| ||||||||||| || || |||||| |||| |||
Sbjct 52 CGGTGCATTTGGGTTAACGGTCCGGTAATCGTCGGAGCCGGGCCATCGGGGCTAGCCACG 111
Query 217 GCGGCTTGTCTCCATGAACAAAACGTT-CCTTTCGTTGT-TCTCGAGAGAGCAGATTGTA 274
|||||||| |||| || || |||| ||||| ||||| | | |||||||||||||| |
Sbjct 112 GCGGCTTGCCTCCGCGAGGAAGGCGTTCCCTTT-GTTGTAT-TGGAGAGAGCAGATTGCA 169
Query 275 TTGCTTCTCTATGGCAAAAACGTACTTACGATCGTCTCAAGCTTCACCTT-CCTAAG-CA 332
| ||||| |||||||| ||||| ||||| ||| | |||| ||||| || || ||| |
Sbjct 170 TAGCTTCACTATGGCAGAAACGAACTTATGATAGAATCAAACTTCA-TTTACCAAAGAAA 228
Query 333 GTTTTGTCAATTACCGAAAATGCCCTTCCCTGAGGACTTCCCGGAGTACCCGAC-GAAGC 391
| ||||||||||||| |||||||||||||| || |||| |||||| || || || |||
Sbjct 229 G-TTTGTCAATTACCCAAAATGCCCTTCCCGGAAGACTACCCGGAATATCCAACAAAAG- 286
Query 392 GTCAGTTCATCGACTACCTTGAGTCTTACGCTACCCGGTTCGAGATCAAC-CCTAAGTTC 450
| ||||||||||| ||||||||||| ||||| | | || || || || ||| |||||
Sbjct 287 GACAGTTCATCGAGTACCTTGAGTCCTACGCAAACAAATTTGAAAT-TACTCCTCAGTTC 345
Query 451 AACGAGTGTGTGCAGACTGCTCGGTTCGATGAGACCAGTGGCT-TGTGGCG-AGTCAAGA 508
||||||||||| ||| | ||||| | ||| || |||||||| | | ||||| | ||||||
Sbjct 346 AACGAGTGTGTCCAGTCAGCTCGATACGACGAAACCAGTGG-TCTATGGCGCA-TCAAGA 403
Query 509 C--CGT-GTCGAAGAGTGAGTCGACTCAGACCGAGGTCGAGTATATTTGCCGGTGGCTTG 565
| | | ||| | ||| | | | ||| | || ||||| ||||||||||| |
Sbjct 404 CAACATCTTCGTCTTCTTCCTCG-GT--GTCGGAGATGGAATATATCTGCCGGTGGCTAG 460
Query 566 TGGTGGCTACGGGAGAAAATGCGG-AGAGAGTGATGCCGGAGATTGAT-GG-TC-TTTCT 621
||||||| || |||||||| |||| | || || || || ||||| ||| || || |
Sbjct 461 TGGTGGCGACTGGAGAAAACGCGGAAAAG-GTTATTCCAGAGATCGATGGGCTCACAACG 519
Query 622 GAGTTTTCCGGTGAGGTGATTCACGCTTGTGATTACAAGTCCGGCGAGAAATTCGCCG-G 680
||||| |||||||||| | ||| | ||||| || ||||||||||||||| | | | |
Sbjct 520 GAGTTCAACGGTGAGGTGGTCCACTCGTGTGAGTATAAGTCCGGCGAGAAA-T-ACAGAG 577
Query 681 GAAA-AAAGTTCTCGTCGTTGGTTGTGGAAACTCCGGCATGGAAGTTTCTCTTGACCTAG 739
|||| | ||||| ||||| || |||||||||||||||||||||||||||||||| || |
Sbjct 578 GAAAGAGTGTTCTTGTCGTCGGATGTGGAAACTCCGGCATGGAAGTTTCTCTTGATCTTG 637
Query 740 CAAA-C-CATTTCGCTAA-GCCTTCCATGGTCGTGAGAAGCTCTCTTCACGTGATGCCGA 796
|||| | || | ||||| |||| ||||||| || | ||||| |||| ||| | || |
Sbjct 638 CAAATCACAAT--GCTAATGCCT-CCATGGTTGTTCGTAGCTCGGTTCATGTGTTACCAA 694
Query 797 GGGA-AGTAATGGGTAAATCAACGTTT-GAGCT-TGCAATGAAGATGTT-AAGATGGTTT 852
| || | | | || ||||| | |||| || | | | ||| | || | || |||||||
Sbjct 695 GAGAGATTC-TAGGCAAATCGA-GTTTCGAAATCT-CGGTGATGTTGATGAA-ATGGTTT 750
Query 853 CCTCTATGGTTAGTCGACAAGATATTGTTGGTTTTAAGT-TGGATGGTTCTTGG-AAACA 910
||||||||| |||| |||||||| | || || | | ||| || || |||| |||
Sbjct 751 CCTCTATGGCTAGTAGACAAGATCCTACTGATTCTC-GCATGGCTGATT-TTGGGAAATT 808
Query 911 TCGAGAAA-TACGGTTTGAA-ACGACCAGAGATGGGTCCAATGGAGCTAAAAAGCGTGAA 968
| || ||| || || | || | | ||| ||||||| ||||||||||| || | ||
Sbjct 809 T-GACAAAGTATGGGCTAAAGAGGCCCA-AGATGGGCCCAATGGAGCTCAAGATTGTCTC 866
Query 969 AGGCAAGACACCGGTGCTTGACATCGGAGCTATAGAGAAGATC 1011
||| ||||| || || ||||| || ||||| || ||||| |||
Sbjct 867 AGGGAAGACTCCAGTTCTTGATATTGGAGCCATGGAGAAAATC 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62772723760
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5