BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28730.1
Length=792
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491884 jgi|Araly1|491884|fgenesh2_kg.7__1317__AT4G28730.1 1042 0.0
> Ahg491884 jgi|Araly1|491884|fgenesh2_kg.7__1317__AT4G28730.1
Length=725
Score = 1042 bits (564), Expect = 0.0
Identities = 677/729 (93%), Gaps = 17/729 (2%)
Strand=Plus/Plus
Query 1 ACGTCACGAGACAAATTAGCATAGC-ACGCAa-a-gaagaagaagaagaagaagCTCCAA 57
||||||||||||||||||||| || | | || | |||||||||||||||||||||||||
Sbjct 1 ACGTCACGAGACAAATTAGCA-CGCAAAG-AAGACGAAGAAGAAGAAGAAGAAGCTCCAA 58
Query 58 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACACATTGAAACTTGTATCG 117
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 59 GAATCTGTCGCAGAAATCGCCATGGCAGTCACAGCATTTAACCCATTGAAACTTGCATCG 118
Query 118 TCGTCTCTAGATCCGATTCCTTC-A-GTC-TCTTGTTCTTCTTATTCCTTCTCTCTGATA 174
||||||||||||||||||||||| | || |||| |||||||||||| |||||| |||||
Sbjct 119 TCGTCTCTAGATCCGATTCCTTCAATCTCTTCTTCTTCTTCTTATTCATTCTCTTTGATA 178
Query 175 TATGTCGGATCTCCTTACAAGAGATGTCTAAAGCAGTCATGTTCTGTTCGAGCTATG--- 231
| |||||||||| ||| ||||||| |||||||||||||||||||||||||||| |||
Sbjct 179 TCTGTCGGATCTTCTTTCAAGAGAAGTCTAAAGCAGTCATGTTCTGTTCGAGCCATGTCT 238
Query 232 ACTTCTTCTTCTTCGGCTG---CATCGTCTTCTTCTTCGTCCTTTGGATCGAGAATGGAA 288
|||||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||
Sbjct 239 TCTTCTTCTTCTTCGGCTGCTTCATCTTCTTCTTCTTCTTCCTTCGGATCGAGAATGGAA 298
Query 289 GAGAGTATTAGGAAAACAGTGACTGAGAACACTGTCGTTATTTACTCCAAAACTTGGTGC 348
||||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 299 GAGAGCGTGAGGAAAACAGTGACTGAGAACACTGTCGTTGTTTACTCCAAAACTTGGTGC 358
Query 349 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTGTT 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 359 TCATACTGTACTGAAGTGAAGACATTGTTCAAGAGACTTGGGGTTCAGCCACTGGTTATT 418
Query 409 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 GAATTGGATCAACTTGGTCCACAAGGGCCACAACTGCAGAAGGTACTGGAAAGACTTACT 478
Query 469 GGGCAACACACTGTTCCTAATGTTTTCGTATGTGGCAAGCACATTGGTGGCTGCACAGAT 528
|||||||||||||||||||||||||| || | |||||||||||||||||||| ||||||
Sbjct 479 GGGCAACACACTGTTCCTAATGTTTTTGTCGGAGGCAAGCACATTGGTGGCTGTACAGAT 538
Query 529 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAACTGATGTTAGCTGAAGCCAACGGTAAA 588
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 539 ACAGTGAAGCTTAACAGGAAAGGAGATCTGGAAGTGATGTTAGCTGAAGCCAACGGTAAA 598
Query 589 AAC-GGTCAGAGTTGAGGAGATGTTGAAACTGGTTCGGAGATTTTTGCATACGGAGCTTG 647
| | |||||| |||||||| || ||||||||||||||||||||| ||||| ||||||||
Sbjct 599 A-CTGGTCAGTCTTGAGGAGGTGATGAAACTGGTTCGGAGATTTT-GCATATGGAGCTTG 656
Query 648 GAAAGTTTTCTCATTTTTGTTATTATCATTGTACCTCATTTGAATACAATAATTATAGTT 707
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 657 GAAAGTTTTCTCATTTTCGTTATTATCATTGTACCTCATTTGAATACAATAATCATAGTT 716
Query 708 AATAAATAA 716
|||||||||
Sbjct 717 AATAAATAA 725
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29240277339
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5