BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28760.1
Length=3318
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491881 jgi|Araly1|491881|fgenesh2_kg.7__1314__AT4G28760.2 4649 0.0
> Ahg491881 jgi|Araly1|491881|fgenesh2_kg.7__1314__AT4G28760.2
Length=3337
Score = 4649 bits (2517), Expect = 0.0
Identities = 2865/3034 (94%), Gaps = 20/3034 (1%)
Strand=Plus/Plus
Query 291 TTACAGGGACCATAATGAATGAACTCCGAGGCAGAAAGGCTCAAAAGATTGAAAGTCCAG 350
||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 TTACAGGGAACAGAATGAATGAAGTCCGAGGCAGAAAGGCTCAAAAGATTGAAAGTCCAG 371
Query 351 TTCCAGGATGCTTAGGGAAGATGGTTAACCTATTTGATCTAGGAATTGCTGTTAATGGGA 410
|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 372 TTCCAGGATGCTTAGGGAAGATGGTTAACCTATTTGATCTTGGAACAGCTGTTAATGGGA 431
Query 411 ACAAGTTGCTTACAGATAAACCACATCTTGATGGATCCTCTCTGTCAAGAAGTCGATCTG 470
||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 432 ACAAGTTACTTACAGATAAACCACATCTTCATGGATCCTCTCTCTCAAGAAGTCGATCTG 491
Query 471 ATGTGACTCGAATGCCAGGCCCTTCTTATAAAGGCCATTCAGAAGCTGAATTGATTATGT 530
|||||||||||| |||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 492 ATGTGACTCGAACGCCAAGCCCCTCTTATAAAGGCCATTCAGAAGCTGAATTGATTATGT 551
Query 531 CTGATTTGAGGAGAAGTGCTTCTAGCAAACTAAGTGGTACACCGATGAAGAAACTCATTG 590
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 552 CTGATTTGAGGAGAAGTGCTTCTAGCAAAGTAAGTGGTACACCGATGAAGAAACTCATTG 611
Query 591 CTCGAGAAATGTCAAAAGAAGTTGAACATAAACAGAGCCCAACTAATGTGGTTGCTAAGT 650
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 612 CTCGAGAAATGTCAAAAGAAGTAGAACATAAACAGAGCCCAACTAATGTGGTTGCTAAGT 671
Query 651 TGATGGGTTTGGAAACACTTCCCCAGACGCATCAGGAGACTGCTACACAGCGAAGCAAAT 710
||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||
Sbjct 672 TGATGGGTTTGGAAACATTTCCCCAGACATATCCTGAGACTGCTACACAGCGAAGCAAAT 731
Query 711 CCAGAAGCAATTCACACTCTTCTCTGAATCATTCGATGACTTCTACAGATAATGAGGTTC 770
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
Sbjct 732 CCAGAAGCAATTCACACTCTTCTCTGAATCATTCGGTGACTTCTATGGATAATGAGGTCC 791
Query 771 AAAAGTATCAGGATTTCAGTAGGGAATTTAAAGATGTGTATGAAACATGGCAGTCACCTC 830
||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 792 AAAAGTATCAGGAGTTCAGTAGGGAATTTAAAGATGTGTATGAAACGTGGCAGTCGCCTC 851
Query 831 AGAAGGTGAGTCGCTCAAGGGATTGCTCGCCTAGAAAAGGAAGATATGATGAAAGTACGA 890
||||| ||||||| ||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 852 AGAAGATGAGTCGGTCAAGGGATAGCTCGCCTAGAAAAGGAAGATATAATGAAAGTACGA 911
Query 891 CTGAGAAACAAATGGCTCTTGTTCGTCAAAAGTTCTCAGAAGCAAAACGCCTTGTAACAG 950
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 912 CTGAGAAACAAATGGCTCTTGTTCGTCAAAAGTTCTCAGAAGCAAAACGCCTTGTAACAG 971
Query 951 ATGATAGTCTTCACCAATCCAAAGAGTTCCAAGATGCACTTGAAGTGTTAAGCTCGAACA 1010
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 972 ATGACAGTCTTCACCAATCCAAAGAGTTCCAAGATGCACTTGAAGTTTTAAGCTCCAACA 1031
Query 1011 AGGATTTGTTTGTTCAATTTCTCCAGGAATCAAATTCTTTCTCTCAGCAGAATCTTTCTG 1070
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1032 AGGATTTATTTGTTCAATTTCTCCAGGAATCAAATTCCTTCTCTCAGCAGAATCTTTCTG 1091
Query 1071 ACTTTCACCATGTTCCTCCTCATTCAGAGGCGAAGCGGATCACAGTATTGAGACCTTCAA 1130
|||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||
Sbjct 1092 ACTTTCACCATGTTCCTCCTCATTCAGAAGCAAAGCGAATCACAGTATTGAGACCTTCAA 1151
Query 1131 AGGCTGGTGAAACTGAAAAATATGTGGTTCAAGGGAGGAGGAACAAGCAGGTTAAGAAAT 1190
|||||| |||||||||||||| |||||||||||| |||| ||||||||||||||||||||
Sbjct 1152 AGGCTGTTGAAACTGAAAAATTTGTGGTTCAAGGCAGGAAGAACAAGCAGGTTAAGAAAT 1211
Query 1191 TGGCTTCATCAAGTCAAGAGACTGGATGGGGGAACCGTGATCTGGGTTACCCGTCACCTT 1250
|||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 1212 TGGCTTCATCCAGTCAAGAAACTGGATGGGGGAACCGTGATCTGGGTTACCCGTCATCTT 1271
Query 1251 ATGTCAACCGGGGAACCGAAGAACACACTGTACAGCCAACCCGAATTGTCGTCTTGAAGC 1310
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1272 ATGTCAACCGGGGAACCGAGGAACACACTGTACAGCCAACCCGAATTGTCGTCTTGAAGC 1331
Query 1311 CTAGTCTAGGAAAGTCTCTAGATATTAAGGCTGTATCATCATCCCAATCCTCTCCAAGGG 1370
||||| |||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1332 CTAGTATAGGCAAGTCACTAGATATTAAGGCTGTTTCATCATCCCAATCCTCTCCAAGGG 1391
Query 1371 GTTTACACAGTAGGGGATATTTTGATGAGCCTGAAGATGTTGAGACTAAAGAAGTTGCAA 1430
|||||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1392 GTTTACACGGTGGGGGATATTTTGATGAGCCTGGAGATGTTGAGACTAAAGAAGTTGCAA 1451
Query 1431 AGGAAATTACTCGTCAAGTGCGCGAAAATCTGATGGGTCACCACAGGAACGAGACTCAGT 1490
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1452 AGGAAATTACTCGTCAAGTGCGCGAAAATTTGATGGGTCACCACAGGAACGAGACTCAGT 1511
Query 1491 CTTCTTCTGTCCTATCCAATGGCTATATCGGTGATGACAGTTCTTTTAATAAGTCTGATA 1550
|||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct 1512 CTTCTTCTGTCCTATCCAATGGTTATATCGGTGATGACAGTTCTTTTAACAAGTCTGATA 1571
Query 1551 ACGAAGATTTAGTGGGAAATCTTAGCGATTCTGAGATCATGTCACCAGCATCTAGGCATT 1610
| |||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1572 ATGAAGATCTAGTGGGAAATCTTAGCGACTCTGAGATCATGTCACCAGCATCTAGGCATT 1631
Query 1611 CTTGGGACTGTCCAAATAGGTTTGACAGTCTTTTCTCTCCTTCCTCTTTCAGCAGAGCTT 1670
||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1632 CTTGGGACTGTCCAAATCGGTTTGAAAGTCTTTTCTCTCCTTCCTCTTTCAGCAGAGCTT 1691
Query 1671 CATTTTCTCCAGAGTCATCTGTCTGCAGAGAGGCGAAGAAGCGACTTTCTGAAAGATGGG 1730
||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1692 CATATTCTCCAGAGTCATCTGTCTGCAGAGAGGCGAAAAAGCGACTTTCTGAAAGATGGG 1751
Query 1731 CGTTGATGTCAGTATCGGGAAGAACTCAACCGCTTAAACATGTTTCAAGAACCTCAAGCA 1790
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1752 CGTTGATGTCAGTAACGGGAAGAACTCAACCGCTTAAACATGTTTCAAGAACCTCAAGCA 1811
Query 1791 CCTTAGGGGAAATGCTTGCACTTACAGAGACCAAAGTGACAACTGAATCCGGGGAAGGGA 1850
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 1812 CCTTAGGGGAAATGCTTGCACTAACAGAGACCAAAGTGACAACTGAATCCGAGGAAGGGA 1871
Query 1851 GCTATGAAATAGTACCAGCAACGAGGGTATCAACATCATGCATAACTAGTGATCTGAGTC 1910
|| ||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 1872 GCAATGAAATAGCACCAGCCACGAGGGTATCAACATCATGCATAACTAGTGATCTTAGTC 1931
Query 1911 AAGTGGAAATGGCAAGTGATTCTCTGAATATTCTTGCAAGGTCAAAATCAGTCTCTGACG 1970
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1932 AAGTGGAAATGGCAAGTGATTCTCTGAATAAACTTGCAAGGTCAAAATCAGTCTCTGACG 1991
Query 1971 TTAGACTCAACGGAGAAACATCTGTTCTGGGGAGTTCCAAAGTACAGGCTCCACGAGAGC 2030
||||||||||||||||||||||| || |||| | |||||||| |||||||||||||||||
Sbjct 1992 TTAGACTCAACGGAGAAACATCTATTTTGGGAACTTCCAAAGCACAGGCTCCACGAGAGC 2051
Query 2031 TGACTAAGACGGGAAGCCTGAAATCGTCATGGAAAGTCTCAAACTTGTTCTTCTTTAAGA 2090
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 2052 TGACTAAGACGGGAAGCCTGAAATCGTCATGGAAAGTCTCGAATTTGTTCTTCTTTAAGA 2111
Query 2091 ATAATAAAGCAAGCAAGGAGAAAAGAGATGCATCTCAATGCAGCAGTATGTCTCAATTGG 2150
|||||||||||||||||||||||| || |||||||||||||||||||||||| || || |
Sbjct 2112 ATAATAAAGCAAGCAAGGAGAAAAAAGGTGCATCTCAATGCAGCAGTATGTCACATTTAG 2171
Query 2151 CAGCGCCTTCTCCTGTGACTCTTACCGGAAAAACCAGCGAAGATTGTGTGTTTCCTATTG 2210
|| ||||||||||| ||||||||||||| ||||||||||||||||| ||||||||| |
Sbjct 2172 CAAAGCCTTCTCCTGCGACTCTTACCGGACAAACCAGCGAAGATTGTTTGTTTCCTAGAG 2231
Query 2211 ATTGTCTCCCTCCTGTTTCATCAGAACAGCAAAGTATAATCCTAGGCGAGGAGGAAGTGA 2270
||||||||||||||| | |||| | ||| ||||| ||||||| |||||||||||||||||
Sbjct 2232 ATTGTCTCCCTCCTGATGCATCGGTACATCAAAGCATAATCCCAGGCGAGGAGGAAGTGA 2291
Query 2271 CTACACCAAAGCCCCTAGCGACTGGGAATACAAGTGAAAACCAGGACCAGCCAAGTCCAA 2330
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2292 CTACACCAAAGCCCCTAGCGACTGGGAATACAAGTGAAAACCAGGACCAGCCGAGTCCAA 2351
Query 2331 TTTCGGTTTTGTTTCCACCATTTGAAGAGGAATG-TGCCAGCATTCCAGAATGTTCTGGG 2389
||||||||||| |||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct 2352 TTTCGGTTTTGCTTCCACCATTTGAAGAGGAA-GATGTCAGCATTCCAGAATGTTCTGGG 2410
Query 2390 TCAACCAAG-CATTGGTCATCTCAAGGAGACGAAATGTCTCTTAAATCTAATCTAATCGA 2448
|||||| || |||||| ||||||||||||| ||| |||||||||||||||||||||||||
Sbjct 2411 TCAACC-AGACATTGGACATCTCAAGGAGAGGAAGTGTCTCTTAAATCTAATCTAATCGA 2469
Query 2449 CAAATCACCACCAATCGGGTCAATTGCTCGGCTCCTCTCATGGGATGATGACTCTTGCAC 2508
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2470 CAAATCACCACCAATCGGGTCAATTGCTCGGATCCTCTCATGGGATGATGACTCTTGCAC 2529
Query 2509 TGACAACATAGCTAAACCCGCAATGGGAGTCCATGAGGAGGAAGACTGGCATCTCTTCAT 2568
||||||||| ||||||| |||||||||||||||||||| ||||||||| |||||||| |
Sbjct 2530 AGACAACATATCTAAACCAGCAATGGGAGTCCATGAGGATGAAGACTGGTATCTCTTCTT 2589
Query 2569 AGAAATGATCTTGACAGCTGCAGGTTTCAGCAGTGGTTGCATAGTCTCTCATGACCC-CA 2627
||||||||||||||||||||| || |||||||||||||||| || ||||||||||| |
Sbjct 2590 AGAAATGATCTTGACAGCTGCTGGCTTCAGCAGTGGTTGCACGGTTTCTCATGACCCTC- 2648
Query 2628 TCATGTCACGATGGCACATGCCAAACAGTCCCTTAGACCCTTCACTCAGAGACAAATACA 2687
||||||||||||||||| |||||||||||||||||||| |||| ||||||||||||||||
Sbjct 2649 TCATGTCACGATGGCACTTGCCAAACAGTCCCTTAGACTCTTCGCTCAGAGACAAATACA 2708
Query 2688 CCAACCCGGATAACAACAACATCAAGGAGTTCATCCACGAAGGCAAACGCAGACAACAAC 2747
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2709 CCAACCCAGATAACAACAACATCAAGGAGTTCATCCACGAAGGCAAACGCAGACAACAGC 2768
Query 2748 GATCAACTCGTAAGCTCATTTTCGACCGCATCAACTCCATCGTTTCAGAAACAACGACTA 2807
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| ||
Sbjct 2769 GATCAACTCGTAAGCTCATTTTCGACCGCATCAACTCCATCATTTTAGAAACAACGATTA 2828
Query 2808 CACGCACAGGTAATGGTTCTCTGCATTTCGACCTGGTGGAGCATGTGTGGGCTCAGTTAA 2867
| | | | || |||||||||| |||||||||||||||||||||||||||||| || ||||
Sbjct 2829 CGCTCCCGGGCAATGGTTCTCCGCATTTCGACCTGGTGGAGCATGTGTGGGCCCACTTAA 2888
Query 2868 AGGACTGGGTTTCAGATGAGCCTAGCAAGCGTGACTCAGGAGAAGACATGGACGCCAACA 2927
|||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||
Sbjct 2889 AGGACTGGGTTTCAGATGAGCCTAGCAAGCGTGACTCAGGTGAGGACACGGACGCCAACA 2948
Query 2928 GTTTGGCTGCAGAGAGTCTAGTGAAAGATGAGATAGTCGGGAGGACATGGACTCATAGCT 2987
||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 2949 GTTTGGCTGCAGAGAGTCTTGTGAAGGACGAGATAGTCGGGAGGACATGGACTCATAGCT 3008
Query 2988 TGCAAGTTGAAATAGATGACTTTGGGATTGAAATTGAAAAGAGATTGTTGCAAGAGCTAG 3047
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3009 TGCAAGTTGAAATAGACGACTTTGGGATTGAAATTGAAAAGAGATTGTTGCAAGAGCTAG 3068
Query 3048 TAGAGGAAGCCGTTATCGATCTTACACGATGAGATGAGACAGGAGCAATA-TATATACTA 3106
||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||
Sbjct 3069 TAGAGGAAGCCGTTATCGATCTTACACGATGAGATGAGACAAGAGCAACAATATATACTA 3128
Query 3107 CGTTCAATAAAAATGTAAGATAGTGCTAAGTTCAtttttttttGGTCTATGGGAAGATTT 3166
|||| |||||||||||| ||||||| |||||| |||||||| | |||||||||||||||
Sbjct 3129 CGTTGAATAAAAATGTATGATAGTGTTAAGTTTATTTTTTT--G-TCTATGGGAAGATTT 3185
Query 3167 GTGTCTCGAtttttttGTAATGATTGAGAGAGAAAACAGAATGCTGTGTAGCCATTGTTG 3226
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 3186 GTGTCTCGATTTTTTTGTAATGATTGAGAGAGAAAACAAAATGCTGTGTAGCCATTGTTG 3245
Query 3227 AAGCAGAGCAATAAGCAGTTGTTCCCATTTCAAACACAAATCTCGTAACTCTTTTGTACA 3286
|||||||||||||||||||||||||||||| || |||| |||||| |||||||||||||
Sbjct 3246 AAGCAGAGCAATAAGCAGTTGTTCCCATTTTAACCACA--TCTCGTTACTCTTTTGTACA 3303
Query 3287 C---CA-A---AA-TGAAAGCTATGTTGCGATCT 3312
| || | || ||||||||||||||||||||
Sbjct 3304 CAGACACACCGAAATGAAAGCTATGTTGCGATCT 3337
Score = 124 bits (67), Expect = 3e-27
Identities = 80/86 (93%), Gaps = 2/86 (2%)
Strand=Plus/Plus
Query 198 AGAGAGAGATTTGGCTTACTTTATCTCCGGCGGGCATCTTTTTCCGGCGGAGTTTCCGAT 257
|||| ||||||||||| |||| |||||||||||||||| || ||||||||||||||||||
Sbjct 142 AGAGGGAGATTTGGCTAACTTCATCTCCGGCGGGCATC-TTCTCCGGCGGAGTTTCCGAT 200
Query 258 GTATCTACTCTAGCTAAGCTCAGCTC 283
|||||||||||||||| |||||||||
Sbjct 201 GTATCTACTCTAGCTA-GCTCAGCTC 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 125247472743
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5