BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28770.2
Length=1373
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046 1205 0.0
Ahg491881 jgi|Araly1|491881|fgenesh2_kg.7__1314__AT4G28760.2 244 1e-63
> Ahg328819 jgi|Araly1|328819|fgenesh1_pm.C_scaffold_7001046
Length=825
Score = 1205 bits (652), Expect = 0.0
Identities = 787/848 (93%), Gaps = 25/848 (3%)
Strand=Plus/Plus
Query 206 ATGCGACACAATTGTTGCCATGTCTCGTTCGCTTCGATTCTCAAGATCCTTAATTTTCTC 265
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1 ATGCGACACAATTGTTGCCATGTCTCGTTCGCTTCCATTCTCAAGATCCTCAATTTTCTC 60
Query 266 CAAGCTTTCATCGGTATATCAATCATAATCTACTCGATTTGGATGCTCGATCAATACAAT 325
||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 61 CAAGCTTTCATCGGTATCTCAATCATAATCTACTCGATTTGGATGCTCGATCAATATAAC 120
Query 326 CATCACGTTCCCGTTGACCCTCCTCCGTCTCAGCCTCCGGCAGCTTCATCACCGGATTCT 385
||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |
Sbjct 121 CATCACGTTCCCGTTGATCCTCCTCCGTCTCAGCCTCCGGCGGCTTCATCTCCGGA---T 177
Query 386 TCTTATTCCTTCTCTAATTCAATAATTGAGATCAACAGTGTTTCTGATTCTTTGAAGAAT 445
|| || ||||| | |||||| |||||||||||||||||||||||||||||||||||||
Sbjct 178 TC---TT-CTTCT-T-ATTCAAGAATTGAGATCAACAGTGTTTCTGATTCTTTGAAGAAT 231
Query 446 CCGATCGATTTCGTATCGGGTATCGTTCTCGGGTCTGGTGGTGGAGATTCGGGTTTCAAT 505
||||| || ||||||||||||||| | || || ||||||||||||||||||
Sbjct 232 CCGATTAATCTCGTATCGGGTATCG-T-TC---TC-------GGAGATTCGGGTTTCAAT 279
Query 506 CTCCGTTCTTTAGATCTTCCTGCTCCATGGTTTATCTACTGTTTCATGGCGATTGGGATT 565
|||||||| |||||||||||||||||||||||||| |||| ||||||||| |||||||||
Sbjct 280 CTCCGTTCCTTAGATCTTCCTGCTCCATGGTTTATTTACTCTTTCATGGCCATTGGGATT 339
Query 566 TTGGTCTGCATTGTCACTATCATTGGTTTCATTGCAGCTGAAGCTATCAATGGATGTTGC 625
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 340 TTGGTCTGCATTGTCACTATCATCGGTTTCATTGCAGCTGAAGCTATCAATGGATGTTGC 399
Query 626 TTGTGTTTCTATTCAATTCTCAAAACTCTTTTAATCATTA-TCGAAGCAGCTCTAGTGGG 684
|||||||||||||||||||||||||||||| | ||||| | ||||||||||||| |||||
Sbjct 400 TTGTGTTTCTATTCAATTCTCAAAACTCTTCTGATCAT-ACTCGAAGCAGCTCTTGTGGG 458
Query 685 AT-TCATAGTGATTGACCGTCACTGGGAGAAGGATCTTCCTTATGATCCAACTGGAGAAC 743
|| | |||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 459 ATAT-ATAGCCATTGACCGTCACTGGGAAAAGGATCTTCCTTATGATCCAACTGGAGAAC 517
Query 744 TCAATAGTCTTCGAGCTTTCATCGAAGAAAACATCGATATTTGCAAATGGGTCGGAATTG 803
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 518 TCAATAGTCTTCGAGCTTTCATAGAAGAAAACATCGATATTTGCAAATGGGTCGGGATTG 577
Query 804 TTGTGGTAGCCATCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAGAGCTATGGTTT 863
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 578 TTGTGGTAGCGATCCAGTTACTGTCATTGCTACTGGCTTTGGTTTTGAGAGCTATGGTTT 637
Query 864 CACCTCGGCAATCAGAGCTTGATGATGAAGATGATTTTGAGAATCCGATGAGTAGAGCAC 923
|||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 638 CACCCCGACAATCAGAGCTTGATGATGAGGATGATTTTGAGAATCCAATGAGTAGAGCAA 697
Query 924 GAGACAATCTTCTTGGTCCACAGGCAAACCAGACATCTTCTGGATCAAGCAATATTGACA 983
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 698 GAGAGAATCTTCTTGGTCCACAGGCAAACCAGACATCTTCTGGATCAAGCAATATTGACA 757
Query 984 ACTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGATCAACAGTCAGAGCCACACTCCAT 1043
| ||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||
Sbjct 758 ATTGGAGGTCCCGAATCAGAGAGAAGTACGGATTGATCAACGGTCAGAGCCAGAATCCAT 817
Query 1044 CAGCTTAA 1051
||||||||
Sbjct 818 CAGCTTAA 825
> Ahg491881 jgi|Araly1|491881|fgenesh2_kg.7__1314__AT4G28760.2
Length=3337
Score = 244 bits (132), Expect = 1e-63
Identities = 177/196 (90%), Gaps = 13/196 (7%)
Strand=Plus/Minus
Query 1184 AGATCGCAACATAGCTTTCA-TT---T-TG---GTGTACAAAAGAGTTACGAGATTTGTG 1235
|||||||||||||||||||| || | || |||||||||||||| |||||| ||||
Sbjct 3337 AGATCGCAACATAGCTTTCATTTCGGTGTGTCTGTGTACAAAAGAGTAACGAGA--TGTG 3280
Query 1236 TTTGAAATGGGAACAACTGCTTATTGCTCTGCTTCAACAATGGCTACACAGCATTCTGTT 1295
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3279 GTTAAAATGGGAACAACTGCTTATTGCTCTGCTTCAACAATGGCTACACAGCATTTTGTT 3220
Query 1296 TTCTCTCTCAATCATTACaaaaaaaTCGAGACACAAATCTTCCCATAGACCaaaaaaaaa 1355
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 3219 TTCTCTCTCAATCATTACAAAAAAATCGAGACACAAATCTTCCCATAGAC-AAAAAAATA 3161
Query 1356 TGAACTTAGCACTATC 1371
|||||| |||||||
Sbjct 3160 --AACTTAACACTATC 3147
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51389692116
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5