BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G28775.1

Length=604
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg945149 jgi|Araly1|945149|scaffold_701378.1                        580    3e-165


> Ahg945149 jgi|Araly1|945149|scaffold_701378.1
Length=460

 Score =  580 bits (314),  Expect = 3e-165
 Identities = 370/396 (93%), Gaps = 8/396 (2%)
 Strand=Plus/Plus

Query  100  AACAAAACATCTTTGTGGAAGATAAGGAAGATCTTAACAGAGAAAAGTGATGGTTGGTTG  159
            ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  69   AACAAAACATCTTTGTGGAAGATAAGGAAGATCATAACAGAGAAAAGTGATGGTTGGTTG  128

Query  160  GACTTTGATAATAACAACGATATCGAGAATCATATTTTGAGAAGTTTGGGCGAATCCATA  219
            ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| 
Sbjct  129  GACTTTGATAATAACAACGATATTGAGAATCATATTTTGAGAAGTTTGGGCGAACCCAT-  187

Query  220  ATTAGTAGAGTGAAAAAAGACTC-TATAAAGATAAAGATCGACGATTATGATACAGGGAG  278
             |  |||||||||||||||| || |||| |||| |||||||||||||| |||||||||||
Sbjct  188  -TG-GTAGAGTGAAAAAAGA-TCCTATAGAGATCAAGATCGACGATTACGATACAGGGAG  244

Query  279  CCAGCACGAGGTAACCTTCGGGTATAATCATGAATCTGATACATATTACATTGGATCATT  338
            |||| ||||||||||||| ||||| |||||| ||||||||| ||||||||||||| ||||
Sbjct  245  CCAGTACGAGGTAACCTTAGGGTACAATCATAAATCTGATATATATTACATTGGAGCATT  304

Query  339  ATGGAGATTGAAGGAGCTTGCTGCTGGAGATGAAATAGGATTGTTTTACGATCCTATTTC  398
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  305  ATGGAGATTGAAGGAGCTTGCTGTTGGAGATGAAATAGGATTGTTTTACGATCCTATTTC  364

Query  399  AAAGAATTTGTGTTTCTCTGTGTTGAAACAAGCAAAATCCTGCT-TGATCAAAAAAT-GA  456
            |||||| |||||||||||||||||||||||||||||| |||||| | |||||||||  ||
Sbjct  365  AAAGAACTTGTGTTTCTCTGTGTTGAAACAAGCAAAACCCTGCTCT-ATCAAAAAAAAGA  423

Query  457  AATAAGCAAAACCCTGATGATCACAACTTGTTTAAT  492
            || |||||||||||||||||||||||||||||||||
Sbjct  424  AACAAGCAAAACCCTGATGATCACAACTTGTTTAAT  459



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22073168943


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5