BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28780.1
Length=1582
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491877 jgi|Araly1|491877|fgenesh2_kg.7__1310__AT4G28780.1 1759 0.0
> Ahg491877 jgi|Araly1|491877|fgenesh2_kg.7__1310__AT4G28780.1
Length=1322
Score = 1759 bits (952), Expect = 0.0
Identities = 1200/1316 (91%), Gaps = 32/1316 (2%)
Strand=Plus/Plus
Query 53 TAGATCATGTCCACATTTCTCCTAACATGGATTATTATGACCGTC-GCGTTAAGCGTAAC 111
||||||||||||||||||||||||||||||||| ||||| || | |||||| |||||||
Sbjct 23 TAGATCATGTCCACATTTCTCCTAACATGGATTTTTATG-TCGGCAGCGTTATGCGTAAC 81
Query 112 GCTT-TTTCTTATGCCGCAACAAACAAATGCGGCTAGAGCGTTCTTCGTGTTTGGCGACT 170
| || |||||||||||||||||||||| |||||| |||||||||| |||||||||||||
Sbjct 82 G-TTAATTCTTATGCCGCAACAAACAAACGCGGCTCGAGCGTTCTTTGTGTTTGGCGACT 140
Query 171 CACTCGTGGACAGTGGTAATAACAATTACTTAGTCACCACTGCTCGTGCCGATTCTCCAC 230
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 141 CACTCGTGGACAGTGGTAATAACAATTACTTAGTCACCACCGCTCGTGCCGATTCTCCGC 200
Query 231 CGTATGGAATCGATTATCCGACTGGTCGACCAACCGGTCGTTTCTCCAACGGCTTGAACC 290
|||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 201 CGTATGGAATCGATTATCCGACCGGTCGACCAACTGGTCGTTTCTCCAACGGCTTGAACC 260
Query 291 TCCCTGACATCATCAGTGAACAAATTGGATCTGAGCCTACATTACCAATTCTTAGCCCTG 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 261 TCCCTGACATCATCAGTGAACAAATTGGATCTGAGCCTACATTACCAATTCTTAGCCCTG 320
Query 351 AACTCACTGGAGAGAAGCTATTGATCGGAGCTAACTTTGCCTCTGCCGGCATTGGAATTC 410
| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 321 AGCTCACCGGAGAGAAGCTATTGATCGGAGCTAACTTTGCCTCTGCCGGCATTGGAATAC 380
Query 411 TCAACGATACTGGCGTTCAATTTTTGAACATACTAAGGATCGGTAGGCAATTCGAGCTGT 470
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 TCAACGATACTGGCGTTCAATTTTTGAACATACTAAGGATCGGTAGGCAATTCGAGCTGT 440
Query 471 TCCAAGAGTATCAAGAGAGAGTGAGTGAGATTATAGGTTCAGACAAAACGCAACAGCTTG 530
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 441 TCCAAGAGTATCAAGAGAGAGTGAGTGAGATTATAGGTTCAGACAAAACACAACAGCTTG 500
Query 531 TAAATGGGGCTCTCGTCCTCATGACTCTCGGCGGCAATGATTTCGTCAACAACTACTTCT 590
|||| |||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct 501 TAAACGGGGCTCTTGTCCTCATGACTCTCGGTGGCAACGATTTCGTCAACAACTACTTCT 560
Query 591 TCCCCATCTCTACTAGAAGACGCCAATCATCTCTCGGTGAATTTAGCCAGCTTCTCATCT 650
| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 561 TTCCCATCTCTTCTAGAAGACGCCAATCATCTCTCGGTGAATTTAGCCAGCTTCTCATCT 620
Query 651 CCGAATACAAGAAAATCCTGACGAGTCTTTATGAGTTGGGAGCAAGGAGGGTGATGGTGA 710
| ||||||||||||||||| ||||| || |||||||||||||| |||||||| |||||||
Sbjct 621 CAGAATACAAGAAAATCCTAACGAGGCTGTATGAGTTGGGAGCGAGGAGGGTCATGGTGA 680
Query 711 CGGGAACAGGACCTTTGGGTTGCGTACCAGCGGAGCTTGCCTCATCGGGAAGTGTGAATG 770
||||||||||||| ||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 681 CGGGAACAGGACCGTTGGGTTGCGTACCAGCCGAGCTTGCCTCATCCGGAAGTGTGAATG 740
Query 771 GAGAATGTGCACCCGAGGCGCAACAGGCTGCAGCAATCTTCAATCCTCTTTTAGTTCAAA 830
||||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct 741 GAGAATGTGCACCCGAGGCTCAACAGGCTGCAGCAATATTCAATCCGCTTTTGGTTCAAA 800
Query 831 TGCTTCAAGGACTTAACCGTGAGATTGGTTCTGATGTTTTCATCGGGGCTAATGCCTTTA 890
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 801 TGCTTCAAGGACTTAACCGTGAGATTGGTTCTGATGTTTTCATTGGGGCTAATGCCTTTA 860
Query 891 ACACGAATGCGGATTTCATCAACAATCCCCAAAGATTTGGTTTTGTGACGTCAAAAGTAG 950
| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 861 ATACAAATGCGGATTTCATCAACAATCCCCAAAGATTTGGTTTTGTGACGTCAAAGGTAG 920
Query 951 CATGTTGTGGACAAGGAGCATACAACGGGCAAGGCGTTTGCACCCCA-TTGTCGA-CTTT 1008
|||| || || ||||||||||||||||||||||||||||| |||| | ||||| | | |
Sbjct 921 CATGCTGCGGGCAAGGAGCATACAACGGGCAAGGCGTTTGTACCC-AGTTGTCAAGCCT- 978
Query 1009 ATGCTCTGACCGCAATGCCTATGCTTTCTGGGACCCTTTCCACCCGACCGAGAAAGCCAC 1068
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 979 ATGCCCTGACCGCAATGCCTATGCTTTCTGGGACCCTTTCCACCCAACCGAGAAAGCCAC 1038
Query 1069 CCGACTCATCGTCCAACAAATCATGACTGGTTCGGTTGAGTACATGAACCCCATGAACCT 1128
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct 1039 TCGACTCATCGTCCAACAAATCATGACTGGTTCCATTGAATACATGAACCCCATGAACCT 1098
Query 1129 TAGTACTATTATGGCTTTAGACTCCAGAATATAATTAAGGATGCAATCTTTTA-CAGAAT 1187
|||||| || ||||||||||||||||||||||||| ||||| | |||||||| ||||||
Sbjct 1099 TAGTACCATCATGGCTTTAGACTCCAGAATATAATCAAGGAAGTAATCTTTTTTCAGAAT 1158
Query 1188 CTATT-TC-CAGTTTTTCTCGTATG-ATAA-AATATCGCGAGT-CTGCCAAACAATGGTA 1242
| || | |||| | | || | | || ||| | | || ||| | | || |
Sbjct 1159 ATGTTATATCAGTGAA-C-C-TA-GCA-AACAATGTTAAG-GTACTG--AGG-ATTGTTT 1209
Query 1243 AGGA-A-CTAAGGAT-TCTATTTTTC--C-AAATTATGGTTTTCTTAGTTTCTCTCTAAT 1296
| | | || || ||| || ||| | |||||| || ||||||| ||||||||||||
Sbjct 1210 TTGTTATC-AA--ATCTCTCTTCTTCGTCTAAATTAGGGATTTCTTAATTTCTCTCTAAT 1266
Query 1297 GCTAATGGGGAGTCTCTGTCTCGGCTCTGTCTTTTCTGTTATGTTTCAATTTTGTG 1352
| |||||| ||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct 1267 GGTAATGGAGAGTCTCTGTCTCAGCTCTGTTTTTTCTGTTATGTTTCAATTTTGTG 1322
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59268421220
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5