BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G28811.1
Length=1993
Score E
Sequences producing significant alignments: (Bits) Value
Ahg945147 jgi|Araly1|945147|scaffold_701376.1 1524 0.0
> Ahg945147 jgi|Araly1|945147|scaffold_701376.1
Length=5383
Score = 1524 bits (825), Expect = 0.0
Identities = 1138/1285 (89%), Gaps = 38/1285 (3%)
Strand=Plus/Plus
Query 447 GTGAAGATGATGTGGTGGAACTCTTATGGAAAAGCGGCCAAGTCGTTCAAAGCATCCAGA 506
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 2689 GTGAAGATGATGTGGTGGAGCTCTTATGGAAAAGCGGCCAAGTCGTTCAAAGCAGCCAGA 2748
Query 507 CACAGAGACCCATTCCTCCTCCCATTTTCCGCGGCAGCGGAAGTGGGGGAGGTGAAGAAA 566
|||||||| |||||||||||||||||||||||||||||||||| || | ||||||||||
Sbjct 2749 CACAGAGATCCATTCCTCCTCCCATTTTCCGCGGCAGCGGAAGCAGGAGCGGTGAAGAAA 2808
Query 567 CTGTTCTGCCTCTGCCTCCCCTGCATCCGTCTCATCAAAATATCTTCATCCAGGAAGACG 626
||| ||| |||| ||||||||||||||| ||||| || | | |||| |||||||||||||
Sbjct 2809 CTGCTCTCCCTCCGCCTCCCCTGCATCCTTCTCAGCAGATTCTCTTTATCCAGGAAGACG 2868
Query 627 AAATGGCCTCTTGGCTTTACCATCCCCTCCGTC-AAGATTATTTTTCCTCTGGCGTCGCC 685
|||| || ||||||||||||||||| |||| || |||||||| ||||||| |||||| |
Sbjct 2869 AAATAGCGTCTTGGCTTTACCATCCTCTCC-TCCAAGATTATCTTTCCTCCGGCGTCACT 2927
Query 686 TCTACTTCAGCTACTCGCCCG-CAAAGTTCCGCCTCTCTAGCACCAACACCACCACCACC 744
|||||| | ||||||| || | ||| |||||| |||||| |||||| | | ||||||||
Sbjct 2928 TCTACTCCGGCTACTCACC-GACAAGGTTCCGTCTCTCTGGCACCA-C-C-ACCACCACT 2983
Query 745 CAGTGTTCCCTACGGTCAGATTCCCGTTGAGAGAAGGACAGAGAATTTTATGAACTTCTT 804
||||| ||| |||||||||||| ||| || ||||||||||| |||||||||||||||||
Sbjct 2984 CAGTGCTCCGTACGGTCAGATTACCGCTGCCAGAAGGACAGATAATTTTATGAACTTCTT 3043
Query 805 GAGGCT-AAGAGGGAACATATTTTCCGGCGGTAGAGTTGAAGCTGGTCCGGTGGTTATAG 863
|||||| || |||||||||| || |||||||||||||||||||||| |||||||| ||||
Sbjct 3044 GAGGCTTAA-AGGGAACATACTTACCGGCGGTAGAGTTGAAGCTGGGCCGGTGGTGATAG 3102
Query 864 AATCGACGCAGATAGGCTCAAGCGCGACCCCGTCGTCTTCAGCCGCTGAATCCTGTGTAA 923
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3103 AATCGACGCAGGTAGGCTCAAGCGCGACCCCGTCGTCTTCAGCCACTGAATCCTGTGTAA 3162
Query 924 TACCAGCGACTCACGGCACCGAGAGTAGAGCGGCGGCCATTACCGGAGTATCCCGTACTT 983
|||||| ||||||||||||||||||| |||| ||| |||| |||||||||||||||||
Sbjct 3163 TACCAGTGACTCACGGCACCGAGAGTCGAGCAACGGTCATTGGCGGAGTATCCCGTACTT 3222
Query 984 TTGCAGTTCCTGGTCTTGGTCGGAGGGGAAAGGAGGTGGCAACCGAGACGGCCGGAACAT 1043
|||||||||| ||| ||||| |||||||||||| |||||| | ||||||||| |||||||
Sbjct 3223 TTGCAGTTCCCGGTTTTGGTAGGAGGGGAAAGGCGGTGGCGATCGAGACGGCTGGAACAT 3282
Query 1044 CATATTCAGGGGTAAACAAGGCCGAAACAGAGCGGGTTCAAATACAACCGGAGAGGGAGA 1103
||| ||| |||||| ||||||||||||||||| ||||| |||||||||||||| ||||
Sbjct 3283 CATCTTCGGGGGTATGCAAGGCCGAAACAGAGCCGGTTCGAATACAACCGGAGACTGAGA 3342
Query 1104 CGAAAATTACCGAAGATA---AG--AA-G-AGAGA-A-GAAACCATTG-CAGAAATCCAA 1153
|| ||||| ||||||| | || || | ||||| | |||||||||| | ||||||||
Sbjct 3343 CGGAAATTTCCGAAGACAGGGAGCGAAAGGAGAGAGAAGAAACCATTGTC-GAAATCCAG 3401
Query 1154 GGAACTGAAGAAGCTCATGGTTCAACGTCTAGGAAGAGGTCACGAGCTGCAGATATGCAT 1213
|||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 3402 GGAACTGAAGAAGCTCGTGGTTCAACGTCTAGGAAGAGGTCACGAGCTGCAGAAATGCAT 3461
Query 1214 AACCTCTCCGAAAGGAGACGGAGGGAAAGGATCAACGAGAGGATGAAAACTCTGCAAGAA 1273
|||||| ||||||||||| |||| |||| ||||||||||| |||||| ||||||||||||
Sbjct 3462 AACCTCGCCGAAAGGAGAAGGAGAGAAAAGATCAACGAGAAGATGAAGACTCTGCAAGAA 3521
Query 1274 CTCCTTCCTCGCTGCAGA-AAGACTGA-TAAAGTTTCAATGCTTGAAGATGTTATCGAGT 1331
||| |||||||||||| | ||| || | ||||||||||| ||| ||||||||||||||||
Sbjct 3522 CTCATTCCTCGCTGCA-ACAAGTCT-ACTAAAGTTTCAACGCTGGAAGATGTTATCGAGT 3579
Query 1332 ACGTGAAATCGCTACAGCTGCAAATACAGATGATGTCGATGGGACATGGTATGATGCCAC 1391
|| ||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 3580 ACATGAAATCACTACAGATGCAAATACAGATGATGTCGATGGGTCATGGTATGATGCCAC 3639
Query 1392 CGATGATGCATGAGGGGAATACGCAACAGTTCATGCCCCACATGGCCATGGGGATGAAGG 1451
|||||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 3640 CGATGATGAATGCGGAGAATATGCAACAGTTCATGCCCCACATGGCCATGGGGATGAA-- 3697
Query 1452 GTATGAACCGGCCTCCTCCTTTCGTACCGTTCCCCGGCAAAACTTTTCCTAGGCCGGGTC 1511
|||||||||||| ||| ||| ||||| |||| | ||||||||||||||||||
Sbjct 3698 -------CCGGCCTCCTCCATTCATACATTTCCCTGGCACAGCTTTTCCTAGGCCGGGTC 3750
Query 1512 ATATGGCAGGTGTAGGTCCATCATACCCAGCATTGCGCTACCCTTTTCCAGACACACAAG 1571
||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||
Sbjct 3751 ATATGGCAGGTGTAGGTCCATCATATCCAGCATCGCGCTACCCTTTTCCAAACACACAAG 3810
Query 1572 CCTCTGACCTATCCAGAGTCCA-TGTACCAAGTCTGCA--CTC-TAACCCGGTGCCAAAC 1627
| ||||||| | |||||||||| | ||||||||||| | || ||||||||||||||||
Sbjct 3811 CTTCTGACCCACCCAGAGTCCAAT-TACCAAGTCTGGAGACTGATAACCCGGTGCCAAAC 3869
Query 1628 CAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCAGTTTGTTGGTCTCCACCAGATG 1687
||||||| |||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 3870 CAGCCTCTATTTCCGGCTTACATGAATCCTTATAGCCAGTTTGTTGGTCTCCACCAGATG 3929
Query 1688 CAACAACCTCCTCTTCCATTGCAGG 1712
||||||||||||| |||||||||||
Sbjct 3930 CAACAACCTCCTCCTCCATTGCAGG 3954
Score = 551 bits (298), Expect = 8e-156
Identities = 490/579 (85%), Gaps = 27/579 (5%)
Strand=Plus/Plus
Query 1135 AACCATTG-CAGAAATCCAAGGAACTGAAGAAGCTCATGGTTCAACGTCTAGGAAGAGGT 1193
|||||||| | |||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 1709 AACCATTGTC-GAAATCCAGGGAACTGAAGAAGCTCGTGGTTCAACGTCCAGGAAGAGGT 1767
Query 1194 CACGAGCTGCAGATATGCATAACCTCTCCGAAAGGAGACGGAGGGAAAGGATCAACGAGA 1253
|| || ||||||| |||||||| || |||||||||||||||| |||| |||||||||||
Sbjct 1768 CAAGAACTGCAGAAATGCATAATTTCGCCGAAAGGAGACGGAGAGAAAAGATCAACGAGA 1827
Query 1254 GGATGAAA-ACTCTGCAAGAACTCCTTCCTCGCTGCAGA-AAGACTGA-TAAAGTTTCAA 1310
|| ||| ||||||||||||||| |||||||||||| | ||| | | |||||||||||
Sbjct 1828 ATAT-AAAGACTCTGCAAGAACTCATTCCTCGCTGCA-ACAAGTC-CACTAAAGTTTCAA 1884
Query 1311 TGCTTGAAGATGTTATCGAGTACGTGAAATCGCTACAGCTG-CAAATACAGATGATGTCG 1369
||| || |||| |||||||||||| |||| ||||||| | |||||||| |||||||||
Sbjct 1885 CGCTGGATGATGCTATCGAGTACGTCAAATGGCTACAG-AGCCAAATACAAATGATGTCG 1943
Query 1370 ATGGGACATGGTATGATGCCACCGATGATGCATG-AGGGGAATACGCAACAGTTCATGCC 1428
| ||||| ||||||||||| || |||||| ||| | |||||||||||||||||||||||
Sbjct 1944 ACAGGACAGGGTATGATGCCGCCAATGATGTATGCA-GGGAATACGCAACAGTTCATGCC 2002
Query 1429 CCACATGGCCATGGGGATGAAGGGTATGAACCGGCCTCCTCCTTTCGTACCGTTCCCCGG 1488
|||||||||||||| || | | |||||||||||| || ||| |||| |||||||
Sbjct 2003 CCACATGGCCATGG--AT-A----T--GAACCGGCCTCCGCCATTCATACCTTTCCCCGA 2053
Query 1489 CAAAACTTTTCCTAGGCCGGGTCATATGGCAGG-TGTAGGTCCATCATACCCAGCATTGC 1547
|| | | ||||||||||||| ||| ||||| || ||||| ||||||||| |||||| ||
Sbjct 2054 CACACCATTTCCTAGGCCGGCTCAAATGGC-GGATGTAGATCCATCATATCCAGCACCGC 2112
Query 1548 GCTACCCTTT-TCCAGACACACAAGCCTCTGACCTATCCAGAGTCCATGTACCAAGTCTG 1606
|||||||||| ||| | || ||| ||| ||||| ||||||||||||| ||| ||||| |
Sbjct 2113 GCTACCCTTTATCCGG-CATTCAAACCTTTGACCCATCCAGAGTCCATTTACGAAGTCCG 2171
Query 1607 CA-CTCTAACCCGGTGCCAAACCAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCA 1665
|| | ||||||||||| | |||||||| | ||||||||||||||| ||||||||||||||
Sbjct 2172 CAGC-CTAACCCGGTGTCGAACCAGCCACAGTTTCCGGCTTACATGAATCCCTATAGCCA 2230
Query 1666 GTTTGTTGGTCTCCACCAGATGCAACAACCTCCTCTTCC 1704
||||| || |||||||||| ||||||||||||||| |||
Sbjct 2231 GTTTGCTGATCTCCACCAGTTGCAACAACCTCCTCCTCC 2269
Score = 350 bits (189), Expect = 3e-95
Identities = 269/308 (87%), Gaps = 4/308 (1%)
Strand=Plus/Plus
Query 130 GGGTGAAGATGATATAGTGGAGCTCTTATGG-A-A-CGGCCAAGTCGTTCGAACCAGCCA 186
||||||||||||||||||||| ||||||||| | | ||||||| |||||||||||| |||
Sbjct 2285 GGGTGAAGATGATATAGTGGAACTCTTATGGAAGAGCGGCCAACTCGTTCGAACCACCCA 2344
Query 187 ACCACAAAGACCTTCCTCGGGTAAACCTTCTCCTACTCCACCCATTCTGCGTGGTAGCGG 246
| |||| ||||||||||| | |||||| ||| || |||||||| |||| || ||||| ||
Sbjct 2345 AACACAGAGACCTTCCTCCGATAAACCCTCTTCTCCTCCACCCGTTCTCCGCGGTAGTGG 2404
Query 247 AAGCGGCAGCGGAGAAGAAAATGCTCCCCTTCCACTTCCACTTCTACAACCTCCACGTCC 306
||||||| | ||||| ||||||||||| ||||| ||||| |||| ||| ||||||| |||
Sbjct 2405 AAGCGGCGGGGGAGATGAAAATGCTCCACTTCCGCTTCCGCTTCCACAGCCTCCACCTCC 2464
Query 307 CCTGCATCATCAGAATCTCTTCATTCGGGAAGAAGAAATGTCTTCTTGGCTTCACTATTC 366
|||||||||||||||||||||||||| |||||| ||| ||||||| ||||||||| |||
Sbjct 2465 CCTGCATCATCAGAATCTCTTCATTCAGGAAGATGAATTGTCTTCCTGGCTTCACAATTT 2524
Query 367 TTACACTGGTGTCACGTCCACACCGGCTACTCATCCGCAAAGTTCTGTTTCCCTGCCACC 426
|||| | || ||||||||||| |||||||||||||| ||||||||||| |||||||||||
Sbjct 2525 TTACCCCGGCGTCACGTCCACCCCGGCTACTCATCCCCAAAGTTCTGTCTCCCTGCCACC 2584
Query 427 ACCA-CCA 433
|||| |||
Sbjct 2585 ACCATCCA 2592
Score = 178 bits (96), Expect = 1e-43
Identities = 248/317 (78%), Gaps = 27/317 (9%)
Strand=Plus/Plus
Query 1499 CCTAGGCCGGGTCATATGGCAGGTGTAGGTCCATCATACCCAGCATTGCGCTACCCTTTT 1558
||||||| || ||||||||| ||||||||||||||||| ||| || || | ||||||||
Sbjct 5076 CCTAGGCAGGCTCATATGGCGGGTGTAGGTCCATCATATCCACCACCGCACAACCCTTTT 5135
Query 1559 CCAGACACACA-AGCCTCTGACCTATCCAGAG-TCCATGT-ACCAAGTCTGCA-CTCTAA 1614
||| ||| || | ||| ||||| |||||||| | | || || ||||| ||| | ||||
Sbjct 5136 CCAAACATTCAGA-CCTTTGACCCATCCAGAGGT--AGGTTACAAAGTCCGCAGC-CTAA 5191
Query 1615 CCCGGTGCCAAACCAGCCTCGGTTTCCGGCTTACATAAATCCCTATAGCCAGTTTGTTGG 1674
|||||||| |||| | | | | | | | | ||||| |||||||||||||| ||
Sbjct 5192 TCCGGTGCCGAACC-GAC-C--T--CAG----A--TGAATCCTTATAGCCAGTTTGTAGG 5239
Query 1675 TCTCCACCAGATGCAACAACCTCCTCTTCC---ATTGCAGGGTCAACCAACATCACAGCC 1731
| ||||||||| ||||||||| || |||| ||||||| ||||| ||||||||||||
Sbjct 5240 CCACCACCAGATACAACAACCTTCTTTTCCTCCATTGCAGAGTCAAACAACATCACAGC- 5298
Query 1732 T-AGTTTCAGCCACGCAAGTACTAGCAAGTAACTTGGGGATCAGGACAACCAACCAACAA 1790
| || ||| |||| ||||||| ||||||| ||| || |||||| ||||||||||| |||
Sbjct 5299 TGAGCTTCGGCCAGGCAAGTAGTAGCAAGGAACCTGATGATCAGAACAACCAACCA-CAA 5357
Query 1791 G-TTAGTAGGAATCAGG 1806
| |||| | ||||||||
Sbjct 5358 GGTTAGAAAGAATCAGG 5374
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 74923511915
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5